RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 PIP4P1Q86T03 277 aa17.74■□□□□ 0.43
CCDC88B-203ENST00000359902 ZNF695Q8IW36 515 aa17.74■□□□□ 0.43
CCDC88B-203ENST00000359902 CCL28Q9NRJ3 127 aa17.74■□□□□ 0.43
CCDC88B-203ENST00000359902 DLL3Q9NYJ7 618 aa17.74■□□□□ 0.43
CCDC88B-203ENST00000359902 NKX2-8O15522 239 aa17.73■□□□□ 0.43
CCDC88B-203ENST00000359902 MUC1P15941 1255 aaPredicted RBP17.73■□□□□ 0.43
CCDC88B-203ENST00000359902 NHLH2Q02577 135 aa17.73■□□□□ 0.43
CCDC88B-203ENST00000359902 ZNF169Q14929 603 aaPredicted RBP17.73■□□□□ 0.43
CCDC88B-203ENST00000359902 P4HA3Q7Z4N8 544 aa17.73■□□□□ 0.43
CCDC88B-203ENST00000359902 A0A1W2PR80 420 aa17.73■□□□□ 0.43
CCDC88B-203ENST00000359902 J3QT63 122 aa17.73■□□□□ 0.43
CCDC88B-203ENST00000359902 HSD17B6O14756 317 aa17.73■□□□□ 0.43
CCDC88B-203ENST00000359902 ZNF880Q6PDB4 577 aa17.73■□□□□ 0.43
CCDC88B-203ENST00000359902 LILRB1Q8NHL6 650 aaPredicted RBP17.73■□□□□ 0.43
CCDC88B-203ENST00000359902 C11orf1Q9H5F2 150 aa17.73■□□□□ 0.43
CCDC88B-203ENST00000359902 IFT22Q9H7X7 185 aa17.73■□□□□ 0.43
CCDC88B-203ENST00000359902 ESPL1Q14674 2120 aa17.73■□□□□ 0.43
CCDC88B-203ENST00000359902 BORCS7-ASMTA0A0B4J1R7 106 aa17.72■□□□□ 0.43
CCDC88B-203ENST00000359902 CDRT15L2A8MXV6 281 aa17.72■□□□□ 0.43
CCDC88B-203ENST00000359902 IGHV1-2P23083 117 aa17.72■□□□□ 0.43
CCDC88B-203ENST00000359902 CD82P27701 267 aa17.72■□□□□ 0.43
CCDC88B-203ENST00000359902 ID4P47928 161 aa17.72■□□□□ 0.43
CCDC88B-203ENST00000359902 SRSF6Q13247 344 aaKnown RBP17.72■□□□□ 0.43
CCDC88B-203ENST00000359902 Q6ZRG5 221 aa17.72■□□□□ 0.43
CCDC88B-203ENST00000359902 GINS3Q9BRX5 216 aa17.72■□□□□ 0.43
CCDC88B-203ENST00000359902 SEC11CQ9BY50 192 aa17.72■□□□□ 0.43
CCDC88B-203ENST00000359902 CCL11P51671 97 aa17.72■□□□□ 0.43
CCDC88B-203ENST00000359902 GNMTQ14749 295 aa17.72■□□□□ 0.43
CCDC88B-203ENST00000359902 Q6P435 159 aa17.72■□□□□ 0.43
CCDC88B-203ENST00000359902 WDR86Q86TI4 376 aa17.72■□□□□ 0.43
CCDC88B-203ENST00000359902 LYPD6BQ8NI32 183 aa17.72■□□□□ 0.43
CCDC88B-203ENST00000359902 NRIP2Q9BQI9 281 aa17.72■□□□□ 0.43
CCDC88B-203ENST00000359902 ADAT1Q9BUB4 502 aaKnown RBP17.72■□□□□ 0.43
CCDC88B-203ENST00000359902 FAM212BQ9NTI7 297 aaPredicted RBP17.72■□□□□ 0.43
CCDC88B-203ENST00000359902 CLCF1Q9UBD9 225 aa17.72■□□□□ 0.43
CCDC88B-203ENST00000359902 RNASEK-C17orf49H0YIS7 233 aa17.71■□□□□ 0.43
CCDC88B-203ENST00000359902 J3QW42 95 aa17.71■□□□□ 0.43
CCDC88B-203ENST00000359902 DEGS1O15121 323 aa17.71■□□□□ 0.43
CCDC88B-203ENST00000359902 SMPD2O60906 423 aa17.71■□□□□ 0.43
CCDC88B-203ENST00000359902 SEC11BP0C7V7 166 aa17.71■□□□□ 0.43
CCDC88B-203ENST00000359902 UCP1P25874 307 aa17.71■□□□□ 0.43
CCDC88B-203ENST00000359902 F2RL1P55085 397 aa17.71■□□□□ 0.43
CCDC88B-203ENST00000359902 PPP1CBP62140 327 aa17.71■□□□□ 0.43
CCDC88B-203ENST00000359902 FAM76BQ5HYJ3 339 aa17.71■□□□□ 0.43
CCDC88B-203ENST00000359902 GCNT2Q8N0V5 402 aa17.71■□□□□ 0.43
CCDC88B-203ENST00000359902 OR2J1Q9GZK6 312 aa17.71■□□□□ 0.43
CCDC88B-203ENST00000359902 URB1O60287 2271 aaKnown RBP17.71■□□□□ 0.43
CCDC88B-203ENST00000359902 WISP2O76076 250 aa17.71■□□□□ 0.43
CCDC88B-203ENST00000359902 IGHG3P01860 377 aa17.71■□□□□ 0.43
CCDC88B-203ENST00000359902 TGFBR3Q03167 851 aa17.71■□□□□ 0.43
CCDC88B-203ENST00000359902 ZNF324BQ6AW86 544 aaPredicted RBP17.71■□□□□ 0.43
CCDC88B-203ENST00000359902 SPAG16Q8N0X2 631 aa17.71■□□□□ 0.43
CCDC88B-203ENST00000359902 FDCSPQ8NFU4 85 aa17.71■□□□□ 0.43
CCDC88B-203ENST00000359902 RTL8AQ9BWD3 113 aa17.71■□□□□ 0.43
CCDC88B-203ENST00000359902 GLRX2Q9NS18 164 aa17.71■□□□□ 0.43
CCDC88B-203ENST00000359902 AGPAT2O15120 278 aa17.7■□□□□ 0.42
CCDC88B-203ENST00000359902 CD5P06127 495 aa17.7■□□□□ 0.42
CCDC88B-203ENST00000359902 SPP1P10451 314 aa17.7■□□□□ 0.42
CCDC88B-203ENST00000359902 ZNF44P15621 663 aa17.7■□□□□ 0.42
CCDC88B-203ENST00000359902 NKX2-1P43699 371 aaPredicted RBP17.7■□□□□ 0.42
CCDC88B-203ENST00000359902 IDH3GP51553 393 aaPredicted RBP17.7■□□□□ 0.42
CCDC88B-203ENST00000359902 ERVS71-1P61550 626 aa17.7■□□□□ 0.42
CCDC88B-203ENST00000359902 CMTM1Q8IZ96 169 aa17.7■□□□□ 0.42
CCDC88B-203ENST00000359902 SUMF1Q8NBK3 374 aa17.7■□□□□ 0.42
CCDC88B-203ENST00000359902 BOD1Q96IK1 185 aa17.7■□□□□ 0.42
CCDC88B-203ENST00000359902 PARP12Q9H0J9 701 aaKnown RBP17.7■□□□□ 0.42
CCDC88B-203ENST00000359902 FRYQ5TBA9 3013 aa17.7■□□□□ 0.42
CCDC88B-203ENST00000359902 ADAM20O43506 726 aa17.7■□□□□ 0.42
CCDC88B-203ENST00000359902 PGLYRP1O75594 196 aaPredicted RBP17.7■□□□□ 0.42
CCDC88B-203ENST00000359902 LYZL6O75951 148 aa17.7■□□□□ 0.42
CCDC88B-203ENST00000359902 F12P00748 615 aaPredicted RBP17.7■□□□□ 0.42
CCDC88B-203ENST00000359902 UBE2NP61088 152 aaKnown RBP17.7■□□□□ 0.42
CCDC88B-203ENST00000359902 POLR2GP62487 172 aaKnown RBP eCLIP17.7■□□□□ 0.42
CCDC88B-203ENST00000359902 HLA-DRB3P79483 266 aa17.7■□□□□ 0.42
CCDC88B-203ENST00000359902 MRPL49Q13405 166 aaKnown RBP17.7■□□□□ 0.42
CCDC88B-203ENST00000359902 SWI5Q1ZZU3 235 aa17.7■□□□□ 0.42
CCDC88B-203ENST00000359902 SCCPDHQ8NBX0 429 aa17.7■□□□□ 0.42
CCDC88B-203ENST00000359902 SPIN2AQ99865 258 aa17.7■□□□□ 0.42
CCDC88B-203ENST00000359902 SPIN2BQ9BPZ2 258 aa17.7■□□□□ 0.42
CCDC88B-203ENST00000359902 CDH20Q9HBT6 801 aa17.7■□□□□ 0.42
CCDC88B-203ENST00000359902 PURGQ9UJV8 347 aaKnown RBP17.7■□□□□ 0.42
CCDC88B-203ENST00000359902 OR2W1Q9Y3N9 320 aa17.7■□□□□ 0.42
CCDC88B-203ENST00000359902 LRP5LA4QPB2 252 aa17.69■□□□□ 0.42
CCDC88B-203ENST00000359902 OR8U9P0C7N5 309 aa17.69■□□□□ 0.42
CCDC88B-203ENST00000359902 DANCRP0C864 163 aa17.69■□□□□ 0.42
CCDC88B-203ENST00000359902 EWSR1Q01844 656 aaKnown RBP eCLIP17.69■□□□□ 0.42
CCDC88B-203ENST00000359902 NMSQ5H8A3 153 aa17.69■□□□□ 0.42
CCDC88B-203ENST00000359902 H1FOOQ8IZA3 346 aaPredicted RBP17.69■□□□□ 0.42
CCDC88B-203ENST00000359902 OR2C3Q8N628 320 aa17.69■□□□□ 0.42
CCDC88B-203ENST00000359902 CLRN3Q8NCR9 226 aa17.69■□□□□ 0.42
CCDC88B-203ENST00000359902 DEFB124Q8NES8 71 aa17.69■□□□□ 0.42
CCDC88B-203ENST00000359902 OR10Z1Q8NGY1 313 aa17.69■□□□□ 0.42
CCDC88B-203ENST00000359902 OR8U1Q8NH10 309 aa17.69■□□□□ 0.42
CCDC88B-203ENST00000359902 OR10J5Q8NHC4 309 aa17.69■□□□□ 0.42
CCDC88B-203ENST00000359902 DUXBA0A1W2PPF3 345 aa17.69■□□□□ 0.42
CCDC88B-203ENST00000359902 CLEC18AA5D8T8 446 aa17.69■□□□□ 0.42
CCDC88B-203ENST00000359902 TNFSF12O43508 249 aa17.69■□□□□ 0.42
CCDC88B-203ENST00000359902 ERVK11-1P61568 191 aa17.69■□□□□ 0.42
CCDC88B-203ENST00000359902 ALKBH6Q3KRA9 238 aa17.69■□□□□ 0.42
CCDC88B-203ENST00000359902 CXorf66Q5JRM2 361 aaPredicted RBP17.69■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 61.7 ms