RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 KRBOX4Q5JUW0 171 aa7.69□□□□□ -1.18
USP4-202ENST00000351842 Q5PR19 223 aa7.69□□□□□ -1.18
USP4-202ENST00000351842 LYPD6Q86Y78 171 aa7.69□□□□□ -1.18
USP4-202ENST00000351842 OR10V1Q8NGI7 309 aa7.69□□□□□ -1.18
USP4-202ENST00000351842 RAB1CQ92928 201 aa7.69□□□□□ -1.18
USP4-202ENST00000351842 KCTD12Q96CX2 325 aaKnown RBP7.69□□□□□ -1.18
USP4-202ENST00000351842 CHODLQ9H9P2 273 aa7.69□□□□□ -1.18
USP4-202ENST00000351842 KCNK7Q9Y2U2 307 aa7.69□□□□□ -1.18
USP4-202ENST00000351842 TRAV38-1A0A0B4J264 116 aa7.69□□□□□ -1.18
USP4-202ENST00000351842 DVL1O14640 695 aa7.69□□□□□ -1.18
USP4-202ENST00000351842 FUT3P21217 361 aa7.69□□□□□ -1.18
USP4-202ENST00000351842 PRSS3P35030 304 aa7.69□□□□□ -1.18
USP4-202ENST00000351842 SSTR5P35346 364 aa7.69□□□□□ -1.18
USP4-202ENST00000351842 POLR2GP62487 172 aaKnown RBP eCLIP7.69□□□□□ -1.18
USP4-202ENST00000351842 QRFPP83859 136 aa7.69□□□□□ -1.18
USP4-202ENST00000351842 GPR176Q14439 515 aa7.69□□□□□ -1.18
USP4-202ENST00000351842 RBM39Q14498 530 aaKnown RBP7.69□□□□□ -1.18
USP4-202ENST00000351842 CLEC12BQ2HXU8 276 aa7.69□□□□□ -1.18
USP4-202ENST00000351842 GLCCI1Q86VQ1 547 aa7.69□□□□□ -1.18
USP4-202ENST00000351842 WFDC11Q8NEX6 87 aa7.69□□□□□ -1.18
USP4-202ENST00000351842 PXT1Q8NFP0 134 aa7.69□□□□□ -1.18
USP4-202ENST00000351842 PLPPR1Q8TBJ4 325 aa7.69□□□□□ -1.18
USP4-202ENST00000351842 C22orf15Q8WYQ4 148 aa7.69□□□□□ -1.18
USP4-202ENST00000351842 PECRQ9BY49 303 aa7.69□□□□□ -1.18
USP4-202ENST00000351842 PKIBQ9C010 78 aa7.69□□□□□ -1.18
USP4-202ENST00000351842 SLC25A10Q9UBX3 287 aaPredicted RBP7.69□□□□□ -1.18
USP4-202ENST00000351842 GLS2Q9UI32 602 aa7.69□□□□□ -1.18
USP4-202ENST00000351842 TMEM82A0PJX8 343 aa7.68□□□□□ -1.18
USP4-202ENST00000351842 CLEC18AA5D8T8 446 aa7.68□□□□□ -1.18
USP4-202ENST00000351842 PDCD6O75340 191 aa7.68□□□□□ -1.18
USP4-202ENST00000351842 F12P00748 615 aaPredicted RBP7.68□□□□□ -1.18
USP4-202ENST00000351842 PMP2P02689 132 aa7.68□□□□□ -1.18
USP4-202ENST00000351842 UBBP0CG47 229 aa7.68□□□□□ -1.18
USP4-202ENST00000351842 HIST1H1DP16402 221 aaKnown RBP7.68□□□□□ -1.18
USP4-202ENST00000351842 CCL3L1P16619 93 aa7.68□□□□□ -1.18
USP4-202ENST00000351842 PPOXP50336 477 aa7.68□□□□□ -1.18
USP4-202ENST00000351842 FXYD4P59646 89 aa7.68□□□□□ -1.18
USP4-202ENST00000351842 HACD4Q5VWC8 232 aa7.68□□□□□ -1.18
USP4-202ENST00000351842 CLEC18BQ6UXF7 455 aa7.68□□□□□ -1.18
USP4-202ENST00000351842 TMEM17Q86X19 198 aa7.68□□□□□ -1.18
USP4-202ENST00000351842 CLEC18CQ8NCF0 446 aa7.68□□□□□ -1.18
USP4-202ENST00000351842 TRIM63Q969Q1 353 aa7.68□□□□□ -1.18
USP4-202ENST00000351842 Q96MF0 132 aa7.68□□□□□ -1.18
USP4-202ENST00000351842 GPHA2Q96T91 129 aa7.68□□□□□ -1.18
USP4-202ENST00000351842 CTSZQ9UBR2 303 aa7.68□□□□□ -1.18
USP4-202ENST00000351842 CLN8Q9UBY8 286 aa7.68□□□□□ -1.18
USP4-202ENST00000351842 RBM7Q9Y580 266 aaKnown RBP7.68□□□□□ -1.18
USP4-202ENST00000351842 IGHV4-61A0A0C4DH41 118 aa7.68□□□□□ -1.18
USP4-202ENST00000351842 ZFP69Q49AA0 526 aa7.68□□□□□ -1.18
USP4-202ENST00000351842 Q6ZSR3 168 aa7.68□□□□□ -1.18
USP4-202ENST00000351842 CDH24Q86UP0 819 aa7.68□□□□□ -1.18
USP4-202ENST00000351842 NOXA1Q86UR1 476 aa7.68□□□□□ -1.18
USP4-202ENST00000351842 DIRC2Q96SL1 478 aa7.68□□□□□ -1.18
USP4-202ENST00000351842 SIRT7Q9NRC8 400 aa7.68□□□□□ -1.18
USP4-202ENST00000351842 PCDHB16Q9NRJ7 776 aa7.68□□□□□ -1.18
USP4-202ENST00000351842 ONECUT1Q9UBC0 465 aa7.68□□□□□ -1.18
USP4-202ENST00000351842 IGKV1D-8A0A087WSZ0 117 aa7.67□□□□□ -1.18
USP4-202ENST00000351842 NKX6-3A6NJ46 265 aa7.67□□□□□ -1.18
USP4-202ENST00000351842 LGALS8O00214 317 aa7.67□□□□□ -1.18
USP4-202ENST00000351842 SLC33A1O00400 549 aaPredicted RBP7.67□□□□□ -1.18
USP4-202ENST00000351842 NDUFB3O43676 98 aa7.67□□□□□ -1.18
USP4-202ENST00000351842 MT-ND4P03905 459 aa7.67□□□□□ -1.18
USP4-202ENST00000351842 MPZP25189 248 aa7.67□□□□□ -1.18
USP4-202ENST00000351842 IL13RA1P78552 427 aa7.67□□□□□ -1.18
USP4-202ENST00000351842 BAIAP2L2Q6UXY1 529 aa7.67□□□□□ -1.18
USP4-202ENST00000351842 OR4D10Q8NGI6 311 aa7.67□□□□□ -1.18
USP4-202ENST00000351842 IFT22Q9H7X7 185 aa7.67□□□□□ -1.18
USP4-202ENST00000351842 ZNRD1Q9P1U0 126 aa7.67□□□□□ -1.18
USP4-202ENST00000351842 SLC23A1Q9UHI7 598 aa7.67□□□□□ -1.18
USP4-202ENST00000351842 ETV7Q9Y603 341 aa7.67□□□□□ -1.18
USP4-202ENST00000351842 CENPXA8MT69 81 aa7.67□□□□□ -1.18
USP4-202ENST00000351842 XRCC3O43542 346 aa7.67□□□□□ -1.18
USP4-202ENST00000351842 PI3P19957 117 aa7.67□□□□□ -1.18
USP4-202ENST00000351842 TSPAN5P62079 268 aa7.67□□□□□ -1.18
USP4-202ENST00000351842 ARF6P62330 175 aa7.67□□□□□ -1.18
USP4-202ENST00000351842 GNB2P62879 340 aa7.67□□□□□ -1.18
USP4-202ENST00000351842 OR10Z1Q8NGY1 313 aa7.67□□□□□ -1.18
USP4-202ENST00000351842 NEU4Q8WWR8 484 aaPredicted RBP7.67□□□□□ -1.18
USP4-202ENST00000351842 FCAMRQ8WWV6 532 aa7.67□□□□□ -1.18
USP4-202ENST00000351842 THAP7Q9BT49 309 aaPredicted RBP7.67□□□□□ -1.18
USP4-202ENST00000351842 GON7Q9BXV9 100 aa7.67□□□□□ -1.18
USP4-202ENST00000351842 DLL4Q9NR61 685 aa7.67□□□□□ -1.18
USP4-202ENST00000351842 NFYAP23511 347 aaPredicted RBP7.67□□□□□ -1.18
USP4-202ENST00000351842 COX7A1P24310 79 aa7.67□□□□□ -1.18
USP4-202ENST00000351842 CHATP28329 748 aa7.67□□□□□ -1.18
USP4-202ENST00000351842 GDNFP39905 211 aa7.67□□□□□ -1.18
USP4-202ENST00000351842 OR3A1P47881 315 aa7.67□□□□□ -1.18
USP4-202ENST00000351842 OR3A3P47888 321 aa7.67□□□□□ -1.18
USP4-202ENST00000351842 GNG10P50151 68 aa7.67□□□□□ -1.18
USP4-202ENST00000351842 RPL31P62899 125 aaKnown RBP7.67□□□□□ -1.18
USP4-202ENST00000351842 PLA1AQ53H76 456 aa7.67□□□□□ -1.18
USP4-202ENST00000351842 C17orf107Q6ZR85 190 aa7.67□□□□□ -1.18
USP4-202ENST00000351842 SLC36A1Q7Z2H8 476 aa7.67□□□□□ -1.18
USP4-202ENST00000351842 Q8IYB0 196 aa7.67□□□□□ -1.18
USP4-202ENST00000351842 ZFAND1Q8TCF1 268 aa7.67□□□□□ -1.18
USP4-202ENST00000351842 RAB40AQ8WXH6 277 aa7.67□□□□□ -1.18
USP4-202ENST00000351842 TOMM40LQ969M1 308 aa7.67□□□□□ -1.18
USP4-202ENST00000351842 KIRREL1Q96J84 757 aa7.67□□□□□ -1.18
USP4-202ENST00000351842 PCGF1Q9BSM1 259 aa7.67□□□□□ -1.18
USP4-202ENST00000351842 FAM234AQ9H0X4 552 aa7.67□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms