RNA–Protein interactions for RNA: ENST00000342220.9

COL18A1-201, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 2

Gene COL18A1, Length 3,386 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-201ENST00000342220 IGHV1-2P23083 117 aa11.25□□□□□ -0.61
COL18A1-201ENST00000342220 NUTF2P61970 127 aaKnown RBP11.25□□□□□ -0.61
COL18A1-201ENST00000342220 C10orf91Q5T1B1 145 aa11.25□□□□□ -0.61
COL18A1-201ENST00000342220 OR14K1Q8NGZ2 314 aa11.25□□□□□ -0.61
COL18A1-201ENST00000342220 METTL9Q9H1A3 318 aa11.25□□□□□ -0.61
COL18A1-201ENST00000342220 GAR1Q9NY12 217 aaKnown RBP11.25□□□□□ -0.61
COL18A1-201ENST00000342220 PRRG2O14669 202 aa11.24□□□□□ -0.61
COL18A1-201ENST00000342220 WDR1O75083 606 aa11.24□□□□□ -0.61
COL18A1-201ENST00000342220 IFNA2P01563 188 aa11.24□□□□□ -0.61
COL18A1-201ENST00000342220 HIST1H1BP16401 226 aaKnown RBP11.24□□□□□ -0.61
COL18A1-201ENST00000342220 SERPINF1P36955 418 aa11.24□□□□□ -0.61
COL18A1-201ENST00000342220 FAM27E3Q08E93 113 aa11.24□□□□□ -0.61
COL18A1-201ENST00000342220 OR1J1Q8NGS3 322 aa11.24□□□□□ -0.61
COL18A1-201ENST00000342220 C20orf24Q9BUV8 137 aa11.24□□□□□ -0.61
COL18A1-201ENST00000342220 OBP2BQ9NPH6 170 aa11.24□□□□□ -0.61
COL18A1-201ENST00000342220 FIGNL2A6NMB9 653 aa11.24□□□□□ -0.61
COL18A1-201ENST00000342220 SFTA3P0C7M3 94 aa11.24□□□□□ -0.61
COL18A1-201ENST00000342220 PGAM2P15259 253 aa11.24□□□□□ -0.61
COL18A1-201ENST00000342220 ZNF25P17030 456 aaPredicted RBP11.24□□□□□ -0.61
COL18A1-201ENST00000342220 RAB5AP20339 215 aa11.24□□□□□ -0.61
COL18A1-201ENST00000342220 C6orf201Q7Z4U5 140 aa11.24□□□□□ -0.61
COL18A1-201ENST00000342220 C17orf78Q8N4C9 275 aa11.24□□□□□ -0.61
COL18A1-201ENST00000342220 FAM24BQ8N5W8 94 aa11.24□□□□□ -0.61
COL18A1-201ENST00000342220 OR4K15Q8NH41 348 aa11.24□□□□□ -0.61
COL18A1-201ENST00000342220 OR51F2Q8NH61 342 aa11.24□□□□□ -0.61
COL18A1-201ENST00000342220 NRIP2Q9BQI9 281 aa11.24□□□□□ -0.61
COL18A1-201ENST00000342220 HDHD3Q9BSH5 251 aaPredicted RBP11.24□□□□□ -0.61
COL18A1-201ENST00000342220 PLEKHJ1Q9NW61 149 aa11.24□□□□□ -0.61
COL18A1-201ENST00000342220 PRR13Q9NZ81 148 aa11.24□□□□□ -0.61
COL18A1-201ENST00000342220 CRIM1Q9NZV1 1036 aa11.24□□□□□ -0.61
COL18A1-201ENST00000342220 MPZP25189 248 aa11.24□□□□□ -0.61
COL18A1-201ENST00000342220 PKIAP61925 76 aa11.24□□□□□ -0.61
COL18A1-201ENST00000342220 KIAA0141Q14154 515 aaPredicted RBP11.24□□□□□ -0.61
COL18A1-201ENST00000342220 TBR1Q16650 682 aa11.24□□□□□ -0.61
COL18A1-201ENST00000342220 GMPPAQ96IJ6 420 aaPredicted RBP11.24□□□□□ -0.61
COL18A1-201ENST00000342220 ARHGAP5-AS1Q96IT6 56 aa11.24□□□□□ -0.61
COL18A1-201ENST00000342220 OCSTAMPQ9BR26 566 aa11.24□□□□□ -0.61
COL18A1-201ENST00000342220 MSL2Q9HCI7 577 aa11.24□□□□□ -0.61
COL18A1-201ENST00000342220 TMEM14DPA8MWL7 114 aa11.23□□□□□ -0.61
COL18A1-201ENST00000342220 DUS4LO95620 317 aaKnown RBP11.23□□□□□ -0.61
COL18A1-201ENST00000342220 WFDC8Q8IUA0 241 aa11.23□□□□□ -0.61
COL18A1-201ENST00000342220 FAM219AQ8IW50 185 aa11.23□□□□□ -0.61
COL18A1-201ENST00000342220 DCUN1D4Q92564 292 aa11.23□□□□□ -0.61
COL18A1-201ENST00000342220 SNRNP40Q96DI7 357 aaKnown RBP11.23□□□□□ -0.61
COL18A1-201ENST00000342220 EGLN1Q9GZT9 426 aa11.23□□□□□ -0.61
COL18A1-201ENST00000342220 LPAR5Q9H1C0 372 aa11.23□□□□□ -0.61
COL18A1-201ENST00000342220 SIRT7Q9NRC8 400 aa11.23□□□□□ -0.61
COL18A1-201ENST00000342220 FAM212BQ9NTI7 297 aaPredicted RBP11.23□□□□□ -0.61
COL18A1-201ENST00000342220 RCC2Q9P258 522 aaKnown RBP11.23□□□□□ -0.61
COL18A1-201ENST00000342220 CRHP06850 196 aa11.23□□□□□ -0.61
COL18A1-201ENST00000342220 PIGYQ3MUY2 71 aa11.23□□□□□ -0.61
COL18A1-201ENST00000342220 ACSF3Q4G176 576 aaPredicted RBP11.23□□□□□ -0.61
COL18A1-201ENST00000342220 PLAC9Q5JTB6 97 aa11.23□□□□□ -0.61
COL18A1-201ENST00000342220 FOXRED2Q8IWF2 684 aa11.23□□□□□ -0.61
COL18A1-201ENST00000342220 OR5AP2Q8NGF4 316 aa11.23□□□□□ -0.61
COL18A1-201ENST00000342220 NANOS1Q8WY41 292 aaKnown RBP11.23□□□□□ -0.61
COL18A1-201ENST00000342220 PHYHIPLQ96FC7 376 aa11.23□□□□□ -0.61
COL18A1-201ENST00000342220 ZNF442Q9H7R0 627 aa11.23□□□□□ -0.61
COL18A1-201ENST00000342220 MOB1AQ9H8S9 216 aa11.23□□□□□ -0.61
COL18A1-201ENST00000342220 OR14J1Q9UGF5 321 aa11.23□□□□□ -0.61
COL18A1-201ENST00000342220 ZDHHC8Q9ULC8 765 aa11.23□□□□□ -0.61
COL18A1-201ENST00000342220 M0R036 132 aa11.22□□□□□ -0.61
COL18A1-201ENST00000342220 SERPINA5P05154 406 aa11.22□□□□□ -0.61
COL18A1-201ENST00000342220 PSMB6P28072 239 aa11.22□□□□□ -0.61
COL18A1-201ENST00000342220 GLP1RP43220 463 aa11.22□□□□□ -0.61
COL18A1-201ENST00000342220 KIR2DL2P43627 348 aaPredicted RBP11.22□□□□□ -0.61
COL18A1-201ENST00000342220 NPY4RP50391 375 aa11.22□□□□□ -0.61
COL18A1-201ENST00000342220 ACTBL2Q562R1 376 aa11.22□□□□□ -0.61
COL18A1-201ENST00000342220 RIPPLY2Q5TAB7 128 aa11.22□□□□□ -0.61
COL18A1-201ENST00000342220 HOGA1Q86XE5 327 aa11.22□□□□□ -0.61
COL18A1-201ENST00000342220 FBXL14Q8N1E6 418 aa11.22□□□□□ -0.61
COL18A1-201ENST00000342220 MRPS18CQ9Y3D5 142 aaKnown RBP11.22□□□□□ -0.61
COL18A1-201ENST00000342220 TRAV39A0A0B4J263 110 aa11.22□□□□□ -0.61
COL18A1-201ENST00000342220 ZNF732B4DXR9 585 aa11.22□□□□□ -0.61
COL18A1-201ENST00000342220 TNFRSF9Q07011 255 aa11.22□□□□□ -0.61
COL18A1-201ENST00000342220 OR1K1Q8NGR3 316 aa11.22□□□□□ -0.61
COL18A1-201ENST00000342220 OR10J5Q8NHC4 309 aa11.22□□□□□ -0.61
COL18A1-201ENST00000342220 BSCL2Q96G97 398 aaPredicted RBP11.22□□□□□ -0.61
COL18A1-201ENST00000342220 BCO1Q9HAY6 547 aa11.22□□□□□ -0.61
COL18A1-201ENST00000342220 HS3ST1O14792 307 aa11.22□□□□□ -0.61
COL18A1-201ENST00000342220 ARG1P05089 322 aa11.22□□□□□ -0.61
COL18A1-201ENST00000342220 FAM3AP98173 230 aa11.22□□□□□ -0.61
COL18A1-201ENST00000342220 SLC9A3R2Q15599 337 aa11.22□□□□□ -0.61
COL18A1-201ENST00000342220 TBC1D28Q2M2D7 210 aa11.22□□□□□ -0.61
COL18A1-201ENST00000342220 ZNF529Q6P280 563 aa11.22□□□□□ -0.61
COL18A1-201ENST00000342220 FAHD2BQ6P2I3 314 aaPredicted RBP11.22□□□□□ -0.61
COL18A1-201ENST00000342220 TMED6Q8WW62 240 aa11.22□□□□□ -0.61
COL18A1-201ENST00000342220 RRNAD1Q96FB5 475 aaKnown RBP11.22□□□□□ -0.61
COL18A1-201ENST00000342220 FAHD2AQ96GK7 314 aa11.22□□□□□ -0.61
COL18A1-201ENST00000342220 CHST5Q9GZS9 411 aa11.22□□□□□ -0.61
COL18A1-201ENST00000342220 KCNIP3Q9Y2W7 256 aa11.22□□□□□ -0.61
COL18A1-201ENST00000342220 A0A0B4J2A0 478 aa11.21□□□□□ -0.61
COL18A1-201ENST00000342220 IFITM10A6NMD0 228 aa11.21□□□□□ -0.61
COL18A1-201ENST00000342220 ADAP1O75689 374 aa11.21□□□□□ -0.61
COL18A1-201ENST00000342220 CRYABP02511 175 aaKnown RBP11.21□□□□□ -0.61
COL18A1-201ENST00000342220 OR3A2P47893 321 aa11.21□□□□□ -0.61
COL18A1-201ENST00000342220 LBHQ53QV2 105 aaPredicted RBP11.21□□□□□ -0.61
COL18A1-201ENST00000342220 C5orf24Q7Z6I8 188 aa11.21□□□□□ -0.61
COL18A1-201ENST00000342220 PIK3IP1Q96FE7 263 aa11.21□□□□□ -0.61
COL18A1-201ENST00000342220 URM1Q9BTM9 101 aaKnown RBP11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 67.5 ms