RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 PRAF2O60831 178 aa3.47□□□□□ -1.85
MCF2-201ENST00000338585 IL5P05113 134 aa3.47□□□□□ -1.85
MCF2-201ENST00000338585 CD55P08174 381 aa3.47□□□□□ -1.85
MCF2-201ENST00000338585 ADH4P08319 380 aa3.47□□□□□ -1.85
MCF2-201ENST00000338585 OR4E1P0C645 316 aa3.47□□□□□ -1.85
MCF2-201ENST00000338585 TRAPPC2P0DI81 140 aa3.47□□□□□ -1.85
MCF2-201ENST00000338585 TRAPPC2BP0DI82 140 aa3.47□□□□□ -1.85
MCF2-201ENST00000338585 AKR1C4P17516 323 aa3.47□□□□□ -1.85
MCF2-201ENST00000338585 TNFSF4P23510 183 aa3.47□□□□□ -1.85
MCF2-201ENST00000338585 LMO1P25800 156 aa3.47□□□□□ -1.85
MCF2-201ENST00000338585 APOBEC3AP31941 199 aaPredicted RBP3.47□□□□□ -1.85
MCF2-201ENST00000338585 FCGR2CP31995 323 aa3.47□□□□□ -1.85
MCF2-201ENST00000338585 PRDX2P32119 198 aa3.47□□□□□ -1.85
MCF2-201ENST00000338585 GABRA2P47869 451 aa3.47□□□□□ -1.85
MCF2-201ENST00000338585 OR3A1P47881 315 aa3.47□□□□□ -1.85
MCF2-201ENST00000338585 FXYD4P59646 89 aa3.47□□□□□ -1.85
MCF2-201ENST00000338585 SEC61A1P61619 476 aaKnown RBP3.47□□□□□ -1.85
MCF2-201ENST00000338585 PPP1R1AQ13522 171 aa3.47□□□□□ -1.85
MCF2-201ENST00000338585 RBM39Q14498 530 aaKnown RBP3.47□□□□□ -1.85
MCF2-201ENST00000338585 ZMYND11Q15326 602 aa3.47□□□□□ -1.85
MCF2-201ENST00000338585 C2orf68Q2NKX9 166 aa3.47□□□□□ -1.85
MCF2-201ENST00000338585 ZNF672Q499Z4 452 aaPredicted RBP3.47□□□□□ -1.85
MCF2-201ENST00000338585 FAM53AQ6NSI3 398 aaPredicted RBP3.47□□□□□ -1.85
MCF2-201ENST00000338585 FIP1L1Q6UN15 594 aaKnown RBP3.47□□□□□ -1.85
MCF2-201ENST00000338585 ZNF497Q6ZNH5 498 aa3.47□□□□□ -1.85
MCF2-201ENST00000338585 TMEM17Q86X19 198 aa3.47□□□□□ -1.85
MCF2-201ENST00000338585 ZNF843Q8N446 348 aa3.47□□□□□ -1.85
MCF2-201ENST00000338585 PRR18Q8N4B5 295 aa3.47□□□□□ -1.85
MCF2-201ENST00000338585 ZNF808Q8N4W9 903 aaPredicted RBP3.47□□□□□ -1.85
MCF2-201ENST00000338585 ZNRF1Q8ND25 227 aa3.47□□□□□ -1.85
MCF2-201ENST00000338585 OR10Z1Q8NGY1 313 aa3.47□□□□□ -1.85
MCF2-201ENST00000338585 TMEM230Q96A57 120 aa3.47□□□□□ -1.85
MCF2-201ENST00000338585 COQ2Q96H96 371 aa3.47□□□□□ -1.85
MCF2-201ENST00000338585 TMEM204Q9BSN7 226 aa3.47□□□□□ -1.85
MCF2-201ENST00000338585 DCTN5Q9BTE1 182 aa3.47□□□□□ -1.85
MCF2-201ENST00000338585 NECAP2Q9NVZ3 263 aa3.47□□□□□ -1.85
MCF2-201ENST00000338585 PRR13Q9NZ81 148 aa3.47□□□□□ -1.85
MCF2-201ENST00000338585 RNF7Q9UBF6 113 aa3.47□□□□□ -1.85
MCF2-201ENST00000338585 SLC23A1Q9UHI7 598 aa3.47□□□□□ -1.85
MCF2-201ENST00000338585 KIF25Q9UIL4 384 aa3.47□□□□□ -1.85
MCF2-201ENST00000338585 GPR132Q9UNW8 380 aa3.47□□□□□ -1.85
MCF2-201ENST00000338585 ZNF462Q96JM2 2506 aa3.46□□□□□ -1.85
MCF2-201ENST00000338585 SPTAN1Q13813 2472 aaKnown RBP3.46□□□□□ -1.86
MCF2-201ENST00000338585 KRTAP4-8A0A0G2JLE6 195 aa3.46□□□□□ -1.86
MCF2-201ENST00000338585 CEACAM18A8MTB9 384 aa3.46□□□□□ -1.86
MCF2-201ENST00000338585 VSTM5A8MXK1 200 aa3.46□□□□□ -1.86
MCF2-201ENST00000338585 TRDCB7Z8K6 153 aa3.46□□□□□ -1.86
MCF2-201ENST00000338585 CREBL2O60519 120 aaPredicted RBP3.46□□□□□ -1.86
MCF2-201ENST00000338585 ZNF737O75373 536 aa3.46□□□□□ -1.86
MCF2-201ENST00000338585 SIX6O95475 246 aa3.46□□□□□ -1.86
MCF2-201ENST00000338585 HLA-AP01891 365 aaKnown RBP3.46□□□□□ -1.86
MCF2-201ENST00000338585 GLAP06280 429 aa3.46□□□□□ -1.86
MCF2-201ENST00000338585 SULT1A3P0DMM9 295 aa3.46□□□□□ -1.86
MCF2-201ENST00000338585 SULT1A4P0DMN0 295 aa3.46□□□□□ -1.86
MCF2-201ENST00000338585 AADACP22760 399 aa3.46□□□□□ -1.86
MCF2-201ENST00000338585 GLIPR1P48060 266 aa3.46□□□□□ -1.86
MCF2-201ENST00000338585 EIF2B2P49770 351 aaKnown RBP3.46□□□□□ -1.86
MCF2-201ENST00000338585 DHRS2Q13268 280 aa3.46□□□□□ -1.86
MCF2-201ENST00000338585 EDDM3AQ14507 147 aa3.46□□□□□ -1.86
MCF2-201ENST00000338585 EFNB3Q15768 340 aa3.46□□□□□ -1.86
MCF2-201ENST00000338585 SWI5Q1ZZU3 235 aa3.46□□□□□ -1.86
MCF2-201ENST00000338585 C11orf91Q3C1V1 193 aa3.46□□□□□ -1.86
MCF2-201ENST00000338585 CD276Q5ZPR3 534 aa3.46□□□□□ -1.86
MCF2-201ENST00000338585 LIN54Q6MZP7 749 aa3.46□□□□□ -1.86
MCF2-201ENST00000338585 ZNF880Q6PDB4 577 aa3.46□□□□□ -1.86
MCF2-201ENST00000338585 DHRS11Q6UWP2 260 aa3.46□□□□□ -1.86
MCF2-201ENST00000338585 PEG10Q86TG7 708 aaKnown RBP3.46□□□□□ -1.86
MCF2-201ENST00000338585 SLC25A42Q86VD7 318 aa3.46□□□□□ -1.86
MCF2-201ENST00000338585 FAM90A1Q86YD7 464 aa3.46□□□□□ -1.86
MCF2-201ENST00000338585 GAPTQ8N292 157 aa3.46□□□□□ -1.86
MCF2-201ENST00000338585 MUC15Q8N387 334 aa3.46□□□□□ -1.86
MCF2-201ENST00000338585 FGFRL1Q8N441 504 aa3.46□□□□□ -1.86
MCF2-201ENST00000338585 ZDHHC22Q8N966 263 aa3.46□□□□□ -1.86
MCF2-201ENST00000338585 UXS1Q8NBZ7 420 aa3.46□□□□□ -1.86
MCF2-201ENST00000338585 ANGPTL6Q8NI99 470 aa3.46□□□□□ -1.86
MCF2-201ENST00000338585 TOMM40LQ969M1 308 aa3.46□□□□□ -1.86
MCF2-201ENST00000338585 PPP1R14BQ96C90 147 aa3.46□□□□□ -1.86
MCF2-201ENST00000338585 KIRREL1Q96J84 757 aa3.46□□□□□ -1.86
MCF2-201ENST00000338585 DHRS9Q9BPW9 319 aa3.46□□□□□ -1.86
MCF2-201ENST00000338585 RTBDNQ9BSG5 229 aaPredicted RBP3.46□□□□□ -1.86
MCF2-201ENST00000338585 SHARPINQ9H0F6 387 aa3.46□□□□□ -1.86
MCF2-201ENST00000338585 FXYD6Q9H0Q3 95 aa3.46□□□□□ -1.86
MCF2-201ENST00000338585 ALX4Q9H161 411 aaPredicted RBP3.46□□□□□ -1.86
MCF2-201ENST00000338585 SAP30LQ9HAJ7 183 aa3.46□□□□□ -1.86
MCF2-201ENST00000338585 RASL12Q9NYN1 266 aa3.46□□□□□ -1.86
MCF2-201ENST00000338585 OR1A1Q9P1Q5 309 aa3.46□□□□□ -1.86
MCF2-201ENST00000338585 ZNF222Q9UK12 451 aa3.46□□□□□ -1.86
MCF2-201ENST00000338585 TRAPPC2LQ9UL33 140 aa3.46□□□□□ -1.86
MCF2-201ENST00000338585 MAB21L2Q9Y586 359 aa3.46□□□□□ -1.86
MCF2-201ENST00000338585 RAI1Q7Z5J4 1906 aaPredicted RBP3.46□□□□□ -1.86
MCF2-201ENST00000338585 MEIKINA0A087WXM9 373 aa3.46□□□□□ -1.86
MCF2-201ENST00000338585 TRBV6-6A0A0A6YYG2 114 aa3.46□□□□□ -1.86
MCF2-201ENST00000338585 SNRPGP15A8MWD9 76 aa3.46□□□□□ -1.86
MCF2-201ENST00000338585 B9A039 149 aa3.46□□□□□ -1.86
MCF2-201ENST00000338585 LYNX1G3V0Z9 82 aa3.46□□□□□ -1.86
MCF2-201ENST00000338585 H3BUI4 141 aa3.46□□□□□ -1.86
MCF2-201ENST00000338585 LY6HO94772 140 aa3.46□□□□□ -1.86
MCF2-201ENST00000338585 GYPAP02724 150 aa3.46□□□□□ -1.86
MCF2-201ENST00000338585 LYNX1P0DP58 116 aa3.46□□□□□ -1.86
MCF2-201ENST00000338585 PGAM2P15259 253 aa3.46□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms