RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 EFNB3Q15768 340 aa12.99□□□□□ -0.33
LIMS1-202ENST00000338045 IGSF11Q5DX21 431 aa12.99□□□□□ -0.33
LIMS1-202ENST00000338045 ADAD2Q8NCV1 583 aaKnown RBP12.99□□□□□ -0.33
LIMS1-202ENST00000338045 NEUROG1Q92886 237 aa12.99□□□□□ -0.33
LIMS1-202ENST00000338045 RTBDNQ9BSG5 229 aaPredicted RBP12.99□□□□□ -0.33
LIMS1-202ENST00000338045 USP24Q9UPU5 2620 aa12.99□□□□□ -0.33
LIMS1-202ENST00000338045 DEFB108AA8MXU0 73 aa12.99□□□□□ -0.33
LIMS1-202ENST00000338045 M0R233 179 aa12.99□□□□□ -0.33
LIMS1-202ENST00000338045 SCTP09683 121 aa12.99□□□□□ -0.33
LIMS1-202ENST00000338045 ANXA3P12429 323 aa12.99□□□□□ -0.33
LIMS1-202ENST00000338045 APOBEC3AP31941 199 aaPredicted RBP12.99□□□□□ -0.33
LIMS1-202ENST00000338045 KCNJ3P48549 501 aa12.99□□□□□ -0.33
LIMS1-202ENST00000338045 PPP1R1AQ13522 171 aa12.99□□□□□ -0.33
LIMS1-202ENST00000338045 MOB1BQ7L9L4 216 aa12.99□□□□□ -0.33
LIMS1-202ENST00000338045 LYG2Q86SG7 212 aa12.99□□□□□ -0.33
LIMS1-202ENST00000338045 ITLN2Q8WWU7 325 aaPredicted RBP12.99□□□□□ -0.33
LIMS1-202ENST00000338045 TMEM230Q96A57 120 aa12.99□□□□□ -0.33
LIMS1-202ENST00000338045 DMRTB1Q96MA1 342 aa12.99□□□□□ -0.33
LIMS1-202ENST00000338045 TMEM204Q9BSN7 226 aa12.99□□□□□ -0.33
LIMS1-202ENST00000338045 TRAF4Q9BUZ4 470 aaPredicted RBP12.99□□□□□ -0.33
LIMS1-202ENST00000338045 MBNL3Q9NUK0 354 aaKnown RBP12.99□□□□□ -0.33
LIMS1-202ENST00000338045 WIPI2Q9Y4P8 454 aa12.99□□□□□ -0.33
LIMS1-202ENST00000338045 ANKHD1Q8IWZ3 2542 aaKnown RBP12.99□□□□□ -0.33
LIMS1-202ENST00000338045 HCFC1P51610 2035 aa12.98□□□□□ -0.33
LIMS1-202ENST00000338045 C9orf170A2RU37 121 aa12.98□□□□□ -0.33
LIMS1-202ENST00000338045 CLDN14O95500 239 aa12.98□□□□□ -0.33
LIMS1-202ENST00000338045 CTXN2P0C2S0 81 aa12.98□□□□□ -0.33
LIMS1-202ENST00000338045 PSG2P11465 335 aa12.98□□□□□ -0.33
LIMS1-202ENST00000338045 RBMXP38159 391 aaKnown RBP12.98□□□□□ -0.33
LIMS1-202ENST00000338045 S100A12P80511 92 aa12.98□□□□□ -0.33
LIMS1-202ENST00000338045 PAX5Q02548 391 aa12.98□□□□□ -0.33
LIMS1-202ENST00000338045 RELQ04864 619 aaPredicted RBP12.98□□□□□ -0.33
LIMS1-202ENST00000338045 HERPUD1Q15011 391 aa12.98□□□□□ -0.33
LIMS1-202ENST00000338045 TESK1Q15569 626 aa12.98□□□□□ -0.33
LIMS1-202ENST00000338045 ZFP69Q49AA0 526 aa12.98□□□□□ -0.33
LIMS1-202ENST00000338045 TMEM128Q5BJH2 165 aa12.98□□□□□ -0.33
LIMS1-202ENST00000338045 CD177Q8N6Q3 437 aa12.98□□□□□ -0.33
LIMS1-202ENST00000338045 OR2AK2Q8NG84 335 aa12.98□□□□□ -0.33
LIMS1-202ENST00000338045 RNF7Q9UBF6 113 aa12.98□□□□□ -0.33
LIMS1-202ENST00000338045 MGAT4AQ9UM21 535 aa12.98□□□□□ -0.33
LIMS1-202ENST00000338045 IGKV1D-17A0A075B6S4 117 aa12.97□□□□□ -0.33
LIMS1-202ENST00000338045 ZG16O60844 167 aa12.97□□□□□ -0.33
LIMS1-202ENST00000338045 PLAUP00749 431 aa12.97□□□□□ -0.33
LIMS1-202ENST00000338045 HLA-AP01891 365 aaKnown RBP12.97□□□□□ -0.33
LIMS1-202ENST00000338045 RCC1P18754 421 aaPredicted RBP12.97□□□□□ -0.33
LIMS1-202ENST00000338045 TNFRSF1AP19438 455 aa12.97□□□□□ -0.33
LIMS1-202ENST00000338045 FCGR2CP31995 323 aa12.97□□□□□ -0.33
LIMS1-202ENST00000338045 PRDX2P32119 198 aa12.97□□□□□ -0.33
LIMS1-202ENST00000338045 GLP1RP43220 463 aa12.97□□□□□ -0.33
LIMS1-202ENST00000338045 HLA-DRB3P79483 266 aa12.97□□□□□ -0.33
LIMS1-202ENST00000338045 BAMBIQ13145 260 aa12.97□□□□□ -0.33
LIMS1-202ENST00000338045 ATXN7L3Q14CW9 347 aaPredicted RBP12.97□□□□□ -0.33
LIMS1-202ENST00000338045 MST1LQ2TV78 715 aa12.97□□□□□ -0.33
LIMS1-202ENST00000338045 ANKRD39Q53RE8 183 aa12.97□□□□□ -0.33
LIMS1-202ENST00000338045 FAM222BQ8WU58 562 aa12.97□□□□□ -0.33
LIMS1-202ENST00000338045 MOB3AQ96BX8 217 aa12.97□□□□□ -0.33
LIMS1-202ENST00000338045 TMPRSS13Q9BYE2 586 aa12.97□□□□□ -0.33
LIMS1-202ENST00000338045 MGAT4CQ9UBM8 478 aa12.97□□□□□ -0.33
LIMS1-202ENST00000338045 ZNF222Q9UK12 451 aa12.97□□□□□ -0.33
LIMS1-202ENST00000338045 SMG1Q96Q15 3661 aaKnown RBP12.97□□□□□ -0.33
LIMS1-202ENST00000338045 ROS1P08922 2347 aa12.97□□□□□ -0.33
LIMS1-202ENST00000338045 IGKV1-6A0A0C4DH72 117 aa12.97□□□□□ -0.33
LIMS1-202ENST00000338045 ZNF205O95201 554 aa12.97□□□□□ -0.33
LIMS1-202ENST00000338045 C1QBP02746 253 aa12.97□□□□□ -0.33
LIMS1-202ENST00000338045 AKR1C4P17516 323 aa12.97□□□□□ -0.33
LIMS1-202ENST00000338045 OR3A1P47881 315 aa12.97□□□□□ -0.33
LIMS1-202ENST00000338045 UCP3P55916 312 aa12.97□□□□□ -0.33
LIMS1-202ENST00000338045 COL10A1Q03692 680 aa12.97□□□□□ -0.33
LIMS1-202ENST00000338045 KCNJ8Q15842 424 aa12.97□□□□□ -0.33
LIMS1-202ENST00000338045 SLC35E4Q6ICL7 350 aa12.97□□□□□ -0.33
LIMS1-202ENST00000338045 C12orf45Q8N5I9 185 aaPredicted RBP12.97□□□□□ -0.33
LIMS1-202ENST00000338045 OR4A4PQ8NGN8 299 aa12.97□□□□□ -0.33
LIMS1-202ENST00000338045 MITD1Q8WV92 249 aa12.97□□□□□ -0.33
LIMS1-202ENST00000338045 CABLES2Q9BTV7 478 aa12.97□□□□□ -0.33
LIMS1-202ENST00000338045 ZNF436Q9C0F3 470 aaPredicted RBP12.97□□□□□ -0.33
LIMS1-202ENST00000338045 SHARPINQ9H0F6 387 aa12.97□□□□□ -0.33
LIMS1-202ENST00000338045 FXYD6Q9H0Q3 95 aa12.97□□□□□ -0.33
LIMS1-202ENST00000338045 PPP1R14DQ9NXH3 145 aa12.97□□□□□ -0.33
LIMS1-202ENST00000338045 SLC23A1Q9UHI7 598 aa12.97□□□□□ -0.33
LIMS1-202ENST00000338045 METRNQ9UJH8 293 aa12.97□□□□□ -0.33
LIMS1-202ENST00000338045 TMEM238LA0A1B0GVL6 79 aa12.96□□□□□ -0.33
LIMS1-202ENST00000338045 B9A039 149 aa12.96□□□□□ -0.33
LIMS1-202ENST00000338045 ZNF737O75373 536 aa12.96□□□□□ -0.33
LIMS1-202ENST00000338045 TUSC2O75896 110 aa12.96□□□□□ -0.33
LIMS1-202ENST00000338045 OR2A4O95047 310 aa12.96□□□□□ -0.33
LIMS1-202ENST00000338045 DUS4LO95620 317 aaKnown RBP12.96□□□□□ -0.33
LIMS1-202ENST00000338045 CTSDP07339 412 aaPredicted RBP12.96□□□□□ -0.33
LIMS1-202ENST00000338045 PI3P19957 117 aa12.96□□□□□ -0.33
LIMS1-202ENST00000338045 IL13RA1P78552 427 aa12.96□□□□□ -0.33
LIMS1-202ENST00000338045 CCL8P80075 99 aa12.96□□□□□ -0.33
LIMS1-202ENST00000338045 C5orf24Q7Z6I8 188 aa12.96□□□□□ -0.33
LIMS1-202ENST00000338045 OR5T2Q8NGG2 359 aa12.96□□□□□ -0.33
LIMS1-202ENST00000338045 OR11L1Q8NGX0 322 aa12.96□□□□□ -0.33
LIMS1-202ENST00000338045 CNTNAP3BQ96NU0 1288 aa12.96□□□□□ -0.33
LIMS1-202ENST00000338045 OR2A7Q96R45 310 aa12.96□□□□□ -0.33
LIMS1-202ENST00000338045 CNTNAP3Q9BZ76 1288 aa12.96□□□□□ -0.33
LIMS1-202ENST00000338045 MS4A5Q9H3V2 200 aa12.96□□□□□ -0.33
LIMS1-202ENST00000338045 CISD1Q9NZ45 108 aaKnown RBP12.96□□□□□ -0.33
LIMS1-202ENST00000338045 DNAJB11Q9UBS4 358 aa12.96□□□□□ -0.33
LIMS1-202ENST00000338045 PCDHB10Q9UN67 800 aa12.96□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms