RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 OR10C1Q96KK4 312 aa1.9□□□□□ -2.11
HMGB1-201ENST00000326004 FAM19A4Q96LR4 140 aa1.9□□□□□ -2.11
HMGB1-201ENST00000326004 CTRCQ99895 268 aa1.9□□□□□ -2.11
HMGB1-201ENST00000326004 C20orf144Q9BQM9 153 aa1.9□□□□□ -2.11
HMGB1-201ENST00000326004 API5Q9BZZ5 524 aaKnown RBP1.9□□□□□ -2.11
HMGB1-201ENST00000326004 HDHD2Q9H0R4 259 aa1.9□□□□□ -2.11
HMGB1-201ENST00000326004 ARV1Q9H2C2 271 aa1.9□□□□□ -2.11
HMGB1-201ENST00000326004 PARVBQ9HBI1 364 aa1.9□□□□□ -2.11
HMGB1-201ENST00000326004 TMBIM4Q9HC24 238 aa1.9□□□□□ -2.11
HMGB1-201ENST00000326004 MYOZ1Q9NP98 299 aaPredicted RBP1.9□□□□□ -2.11
HMGB1-201ENST00000326004 ZDHHC4Q9NPG8 344 aa1.9□□□□□ -2.11
HMGB1-201ENST00000326004 ACOT13Q9NPJ3 140 aa1.9□□□□□ -2.11
HMGB1-201ENST00000326004 MRPL40Q9NQ50 206 aaKnown RBP1.9□□□□□ -2.11
HMGB1-201ENST00000326004 TREX1Q9NSU2 369 aa1.9□□□□□ -2.11
HMGB1-201ENST00000326004 IL20Q9NYY1 176 aa1.9□□□□□ -2.11
HMGB1-201ENST00000326004 EMC3Q9P0I2 261 aa1.9□□□□□ -2.11
HMGB1-201ENST00000326004 ZNF835Q9Y2P0 537 aa1.9□□□□□ -2.11
HMGB1-201ENST00000326004 FAM32AQ9Y421 112 aaKnown RBP1.9□□□□□ -2.11
HMGB1-201ENST00000326004 VPS13AQ96RL7 3174 aa1.9□□□□□ -2.11
HMGB1-201ENST00000326004 SCN9AQ15858 1988 aa1.9□□□□□ -2.11
HMGB1-201ENST00000326004 OTOGLQ3ZCN5 2332 aa1.9□□□□□ -2.11
HMGB1-201ENST00000326004 BRWD1Q9NSI6 2320 aa1.9□□□□□ -2.11
HMGB1-201ENST00000326004 ITPR1Q14643 2758 aa1.89□□□□□ -2.11
HMGB1-201ENST00000326004 ABCA2Q9BZC7 2435 aa1.89□□□□□ -2.11
HMGB1-201ENST00000326004 IGLV2-18A0A075B6J9 118 aa1.89□□□□□ -2.11
HMGB1-201ENST00000326004 SMIM26A0A096LP01 95 aa1.89□□□□□ -2.11
HMGB1-201ENST00000326004 IGHV1OR15-9A0A0B4J2B8 117 aa1.89□□□□□ -2.11
HMGB1-201ENST00000326004 IGKV1-8A0A0C4DH67 115 aa1.89□□□□□ -2.11
HMGB1-201ENST00000326004 OR5K4A6NMS3 321 aa1.89□□□□□ -2.11
HMGB1-201ENST00000326004 M0R1B8 84 aa1.89□□□□□ -2.11
HMGB1-201ENST00000326004 ITGB1BP1O14713 200 aa1.89□□□□□ -2.11
HMGB1-201ENST00000326004 SOCS1O15524 211 aa1.89□□□□□ -2.11
HMGB1-201ENST00000326004 RBBP9O75884 186 aa1.89□□□□□ -2.11
HMGB1-201ENST00000326004 SEMA3DO95025 777 aa1.89□□□□□ -2.11
HMGB1-201ENST00000326004 RCBTB2O95199 551 aa1.89□□□□□ -2.11
HMGB1-201ENST00000326004 TNFAIP8O95379 198 aa1.89□□□□□ -2.11
HMGB1-201ENST00000326004 CRYZL1O95825 349 aa1.89□□□□□ -2.11
HMGB1-201ENST00000326004 CD8AP01732 235 aa1.89□□□□□ -2.11
HMGB1-201ENST00000326004 HLA-DRAP01903 254 aa1.89□□□□□ -2.11
HMGB1-201ENST00000326004 CTSLP07711 333 aa1.89□□□□□ -2.11
HMGB1-201ENST00000326004 SLC35G6P0C7Q6 338 aa1.89□□□□□ -2.11
HMGB1-201ENST00000326004 HSPD1P10809 573 aaKnown RBP1.89□□□□□ -2.11
HMGB1-201ENST00000326004 CYBAP13498 195 aa1.89□□□□□ -2.11
HMGB1-201ENST00000326004 CFL1P23528 166 aaKnown RBP1.89□□□□□ -2.11
HMGB1-201ENST00000326004 KDELR2P33947 212 aa1.89□□□□□ -2.11
HMGB1-201ENST00000326004 RCVRNP35243 200 aa1.89□□□□□ -2.11
HMGB1-201ENST00000326004 PCK1P35558 622 aa1.89□□□□□ -2.11
HMGB1-201ENST00000326004 GGT2P36268 569 aa1.89□□□□□ -2.11
HMGB1-201ENST00000326004 RGS6P49758 472 aa1.89□□□□□ -2.11
HMGB1-201ENST00000326004 XKP51811 444 aa1.89□□□□□ -2.11
HMGB1-201ENST00000326004 TSPAN5P62079 268 aa1.89□□□□□ -2.11
HMGB1-201ENST00000326004 POLR2GP62487 172 aaKnown RBP eCLIP1.89□□□□□ -2.11
HMGB1-201ENST00000326004 ELF3P78545 371 aaPredicted RBP1.89□□□□□ -2.11
HMGB1-201ENST00000326004 MRPS15P82914 257 aaKnown RBP1.89□□□□□ -2.11
HMGB1-201ENST00000326004 HPCAP84074 193 aa1.89□□□□□ -2.11
HMGB1-201ENST00000326004 C2orf54Q08AI8 447 aa1.89□□□□□ -2.11
HMGB1-201ENST00000326004 PIGHQ14442 188 aaPredicted RBP1.89□□□□□ -2.11
HMGB1-201ENST00000326004 GUSBP1Q15486 140 aa1.89□□□□□ -2.11
HMGB1-201ENST00000326004 LY6EQ16553 131 aa1.89□□□□□ -2.11
HMGB1-201ENST00000326004 NDUFA5Q16718 116 aa1.89□□□□□ -2.11
HMGB1-201ENST00000326004 RESP18Q5W5W9 173 aa1.89□□□□□ -2.11
HMGB1-201ENST00000326004 IGFL1Q6UW32 110 aa1.89□□□□□ -2.11
HMGB1-201ENST00000326004 TMEM205Q6UW68 189 aa1.89□□□□□ -2.11
HMGB1-201ENST00000326004 C4orf22Q6V702 233 aa1.89□□□□□ -2.11
HMGB1-201ENST00000326004 Q6ZT83 130 aa1.89□□□□□ -2.11
HMGB1-201ENST00000326004 SLC51BQ86UW2 128 aa1.89□□□□□ -2.11
HMGB1-201ENST00000326004 NELFCDQ8IXH7 590 aa1.89□□□□□ -2.11
HMGB1-201ENST00000326004 ATPAF2Q8N5M1 289 aa1.89□□□□□ -2.11
HMGB1-201ENST00000326004 RNF182Q8N6D2 247 aa1.89□□□□□ -2.11
HMGB1-201ENST00000326004 ZNF709Q8N972 641 aa1.89□□□□□ -2.11
HMGB1-201ENST00000326004 ZNF565Q8N9K5 539 aa1.89□□□□□ -2.11
HMGB1-201ENST00000326004 TTLQ8NG68 377 aa1.89□□□□□ -2.11
HMGB1-201ENST00000326004 RXFP2Q8WXD0 754 aa1.89□□□□□ -2.11
HMGB1-201ENST00000326004 OR5P2Q8WZ92 322 aa1.89□□□□□ -2.11
HMGB1-201ENST00000326004 TNFRSF14Q92956 283 aa1.89□□□□□ -2.11
HMGB1-201ENST00000326004 TCEAL3Q969E4 200 aa1.89□□□□□ -2.11
HMGB1-201ENST00000326004 PTX4Q96A99 478 aa1.89□□□□□ -2.11
HMGB1-201ENST00000326004 SNF8Q96H20 258 aa1.89□□□□□ -2.11
HMGB1-201ENST00000326004 RDH12Q96NR8 316 aa1.89□□□□□ -2.11
HMGB1-201ENST00000326004 TEAD3Q99594 435 aa1.89□□□□□ -2.11
HMGB1-201ENST00000326004 SPZ1Q9BXG8 430 aa1.89□□□□□ -2.11
HMGB1-201ENST00000326004 LCE3DQ9BYE3 92 aa1.89□□□□□ -2.11
HMGB1-201ENST00000326004 SHCBP1LQ9BZQ2 653 aa1.89□□□□□ -2.11
HMGB1-201ENST00000326004 SRRQ9GZT4 340 aa1.89□□□□□ -2.11
HMGB1-201ENST00000326004 PORCNQ9H237 461 aa1.89□□□□□ -2.11
HMGB1-201ENST00000326004 C6orf50Q9HD87 102 aa1.89□□□□□ -2.11
HMGB1-201ENST00000326004 IFT46Q9NQC8 304 aa1.89□□□□□ -2.11
HMGB1-201ENST00000326004 SDHAF3Q9NRP4 125 aa1.89□□□□□ -2.11
HMGB1-201ENST00000326004 VAX2Q9UIW0 290 aa1.89□□□□□ -2.11
HMGB1-201ENST00000326004 SIGLEC9Q9Y336 463 aa1.89□□□□□ -2.11
HMGB1-201ENST00000326004 WIF1Q9Y5W5 379 aa1.89□□□□□ -2.11
HMGB1-201ENST00000326004 PUS1Q9Y606 427 aaKnown RBP eCLIP1.89□□□□□ -2.11
HMGB1-201ENST00000326004 NAV3Q8IVL0 2385 aa1.89□□□□□ -2.11
HMGB1-201ENST00000326004 DSPP15924 2871 aaKnown RBP1.89□□□□□ -2.11
HMGB1-201ENST00000326004 PCNX1Q96RV3 2341 aa1.89□□□□□ -2.11
HMGB1-201ENST00000326004 DNHD1Q96M86 4753 aa1.88□□□□□ -2.11
HMGB1-201ENST00000326004 RELNP78509 3460 aa1.88□□□□□ -2.11
HMGB1-201ENST00000326004 CHD7Q9P2D1 2997 aa1.88□□□□□ -2.11
HMGB1-201ENST00000326004 IGHV1-69DA0A0B4J2H0 117 aa1.88□□□□□ -2.11
HMGB1-201ENST00000326004 C1orf232A0A0U1RR37 186 aa1.88□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 70.5 ms