RNA–Protein interactions for RNA: ENST00000303354.10

SCN9A-201, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 9,786 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-201ENST00000303354 KLHDC2Q9Y2U9 406 aa6.8□□□□□ -1.32
SCN9A-201ENST00000303354 GON4LQ3T8J9 2241 aa6.79□□□□□ -1.32
SCN9A-201ENST00000303354 HOXC4P09017 264 aaPredicted RBP6.79□□□□□ -1.32
SCN9A-201ENST00000303354 UBE2L3P68036 154 aaKnown RBP6.79□□□□□ -1.32
SCN9A-201ENST00000303354 FAM214BQ7L5A3 538 aa6.79□□□□□ -1.32
SCN9A-201ENST00000303354 SPICQ8N5J4 248 aa6.79□□□□□ -1.32
SCN9A-201ENST00000303354 RASL12Q9NYN1 266 aa6.79□□□□□ -1.32
SCN9A-201ENST00000303354 TECRQ9NZ01 308 aaKnown RBP6.79□□□□□ -1.32
SCN9A-201ENST00000303354 TRIM77I1YAP6 450 aa6.79□□□□□ -1.32
SCN9A-201ENST00000303354 CHST1O43916 411 aa6.79□□□□□ -1.32
SCN9A-201ENST00000303354 HSPB1P04792 205 aaKnown RBP6.79□□□□□ -1.32
SCN9A-201ENST00000303354 PDLIM4P50479 330 aa6.79□□□□□ -1.32
SCN9A-201ENST00000303354 CEBPEQ15744 281 aa6.79□□□□□ -1.32
SCN9A-201ENST00000303354 METTL26Q96S19 204 aa6.79□□□□□ -1.32
SCN9A-201ENST00000303354 NKX6-2Q9C056 277 aaPredicted RBP6.79□□□□□ -1.32
SCN9A-201ENST00000303354 DOCK2Q92608 1830 aa6.79□□□□□ -1.32
SCN9A-201ENST00000303354 ZNF737O75373 536 aa6.79□□□□□ -1.32
SCN9A-201ENST00000303354 ATG4DQ86TL0 474 aaPredicted RBP6.79□□□□□ -1.32
SCN9A-201ENST00000303354 SYS1Q8N2H4 156 aa6.79□□□□□ -1.32
SCN9A-201ENST00000303354 RGP1Q92546 391 aaPredicted RBP6.79□□□□□ -1.32
SCN9A-201ENST00000303354 LOC105371242A0A075B767 164 aa6.79□□□□□ -1.32
SCN9A-201ENST00000303354 SYNGR1O43759 233 aa6.79□□□□□ -1.32
SCN9A-201ENST00000303354 PDPNQ86YL7 162 aa6.79□□□□□ -1.32
SCN9A-201ENST00000303354 WDFY1Q8IWB7 410 aa6.79□□□□□ -1.32
SCN9A-201ENST00000303354 MAPK1IP1LQ8NDC0 245 aa6.79□□□□□ -1.32
SCN9A-201ENST00000303354 GLRX2Q9NS18 164 aa6.79□□□□□ -1.32
SCN9A-201ENST00000303354 OR51B2Q9Y5P1 312 aa6.79□□□□□ -1.32
SCN9A-201ENST00000303354 CBY3A6NI87 242 aa6.79□□□□□ -1.32
SCN9A-201ENST00000303354 TO15178 435 aa6.79□□□□□ -1.32
SCN9A-201ENST00000303354 SULT1A1P50225 295 aa6.79□□□□□ -1.32
SCN9A-201ENST00000303354 ASCL5Q7RTU5 278 aa6.79□□□□□ -1.32
SCN9A-201ENST00000303354 PNKDQ8N490 385 aa6.79□□□□□ -1.32
SCN9A-201ENST00000303354 PKD1L3Q7Z443 1732 aa6.79□□□□□ -1.32
SCN9A-201ENST00000303354 IGLV3-16A0A075B6K0 115 aa6.79□□□□□ -1.32
SCN9A-201ENST00000303354 PDCD6O75340 191 aa6.79□□□□□ -1.32
SCN9A-201ENST00000303354 RFPL3SP0C7P2 107 aa6.79□□□□□ -1.32
SCN9A-201ENST00000303354 SMIM18P0DKX4 95 aa6.79□□□□□ -1.32
SCN9A-201ENST00000303354 C3orf36Q3SXR2 165 aa6.79□□□□□ -1.32
SCN9A-201ENST00000303354 XAF1Q6GPH4 301 aa6.79□□□□□ -1.32
SCN9A-201ENST00000303354 NHLRC2Q8NBF2 726 aa6.79□□□□□ -1.32
SCN9A-201ENST00000303354 SP7Q8TDD2 431 aaPredicted RBP6.79□□□□□ -1.32
SCN9A-201ENST00000303354 SCARB1Q8WTV0 552 aa6.79□□□□□ -1.32
SCN9A-201ENST00000303354 TRDCB7Z8K6 153 aa6.79□□□□□ -1.32
SCN9A-201ENST00000303354 LHX2P50458 406 aa6.79□□□□□ -1.32
SCN9A-201ENST00000303354 GNPNAT1Q96EK6 184 aaPredicted RBP6.79□□□□□ -1.32
SCN9A-201ENST00000303354 GPR137Q96N19 417 aa6.79□□□□□ -1.32
SCN9A-201ENST00000303354 SF3B6Q9Y3B4 125 aaKnown RBP6.79□□□□□ -1.32
SCN9A-201ENST00000303354 HS3ST3B1Q9Y662 390 aa6.79□□□□□ -1.32
SCN9A-201ENST00000303354 ATG2BQ96BY7 2078 aa6.79□□□□□ -1.32
SCN9A-201ENST00000303354 CDRT15L2A8MXV6 281 aa6.79□□□□□ -1.32
SCN9A-201ENST00000303354 TOX3O15405 576 aaPredicted RBP6.79□□□□□ -1.32
SCN9A-201ENST00000303354 ADAM11O75078 769 aa6.79□□□□□ -1.32
SCN9A-201ENST00000303354 JTBO76095 146 aa6.79□□□□□ -1.32
SCN9A-201ENST00000303354 GNLYP22749 145 aa6.79□□□□□ -1.32
SCN9A-201ENST00000303354 EVX1P49640 407 aa6.79□□□□□ -1.32
SCN9A-201ENST00000303354 SLC35B1P78383 322 aa6.79□□□□□ -1.32
SCN9A-201ENST00000303354 NUBPLQ8TB37 319 aa6.79□□□□□ -1.32
SCN9A-201ENST00000303354 ITLN2Q8WWU7 325 aaPredicted RBP6.79□□□□□ -1.32
SCN9A-201ENST00000303354 A0A1W2PP11 408 aa6.78□□□□□ -1.32
SCN9A-201ENST00000303354 C9orf170A2RU37 121 aa6.78□□□□□ -1.32
SCN9A-201ENST00000303354 GAPDHP04406 335 aaKnown RBP6.78□□□□□ -1.32
SCN9A-201ENST00000303354 CD82P27701 267 aa6.78□□□□□ -1.32
SCN9A-201ENST00000303354 ETFRF1Q6IPR1 90 aa6.78□□□□□ -1.32
SCN9A-201ENST00000303354 DUSP18Q8NEJ0 188 aa6.78□□□□□ -1.32
SCN9A-201ENST00000303354 ADAT3Q96EY9 351 aaPredicted RBP6.78□□□□□ -1.32
SCN9A-201ENST00000303354 WDR61Q9GZS3 305 aaKnown RBP6.78□□□□□ -1.32
SCN9A-201ENST00000303354 SHROOM3Q8TF72 1996 aa6.78□□□□□ -1.32
SCN9A-201ENST00000303354 H7C2G1 150 aa6.78□□□□□ -1.32
SCN9A-201ENST00000303354 CTAG2O75638 210 aa6.78□□□□□ -1.32
SCN9A-201ENST00000303354 TM4SF20Q53R12 229 aa6.78□□□□□ -1.32
SCN9A-201ENST00000303354 DEFB104AQ8WTQ1 72 aa6.78□□□□□ -1.32
SCN9A-201ENST00000303354 PRSS1P07477 247 aa6.78□□□□□ -1.32
SCN9A-201ENST00000303354 FGF20Q9NP95 211 aaPredicted RBP6.78□□□□□ -1.32
SCN9A-201ENST00000303354 LINC00527Q9UJ94 153 aa6.78□□□□□ -1.32
SCN9A-201ENST00000303354 U3KQ87 197 aa6.78□□□□□ -1.32
SCN9A-201ENST00000303354 A0A0G2JMM0 328 aa6.78□□□□□ -1.32
SCN9A-201ENST00000303354 A0A1W2PPB8 328 aa6.78□□□□□ -1.32
SCN9A-201ENST00000303354 A0A1W2PRS3 328 aa6.78□□□□□ -1.32
SCN9A-201ENST00000303354 TCRBV16S1A1N1A0A5B0 115 aa6.78□□□□□ -1.32
SCN9A-201ENST00000303354 KIR3DP1A8MWS1 328 aa6.78□□□□□ -1.32
SCN9A-201ENST00000303354 FCGR2BP31994 310 aaPredicted RBP6.78□□□□□ -1.32
SCN9A-201ENST00000303354 GNG4P50150 75 aa6.78□□□□□ -1.32
SCN9A-201ENST00000303354 C1orf174Q8IYL3 243 aa6.78□□□□□ -1.32
SCN9A-201ENST00000303354 OR4C12Q96R67 309 aa6.78□□□□□ -1.32
SCN9A-201ENST00000303354 MRPL37Q9BZE1 423 aaKnown RBP6.78□□□□□ -1.32
SCN9A-201ENST00000303354 CD37P11049 281 aa6.78□□□□□ -1.32
SCN9A-201ENST00000303354 SRD5A1P18405 259 aa6.78□□□□□ -1.32
SCN9A-201ENST00000303354 PLPPR5Q32ZL2 321 aa6.78□□□□□ -1.32
SCN9A-201ENST00000303354 INO80CQ6PI98 192 aaPredicted RBP6.78□□□□□ -1.32
SCN9A-201ENST00000303354 ZNF429Q86V71 674 aa6.78□□□□□ -1.32
SCN9A-201ENST00000303354 TMEM116Q8NCL8 245 aa6.78□□□□□ -1.32
SCN9A-201ENST00000303354 SLC52A3Q9NQ40 469 aa6.78□□□□□ -1.32
SCN9A-201ENST00000303354 COL4A5P29400 1685 aa6.78□□□□□ -1.32
SCN9A-201ENST00000303354 SSTR5P35346 364 aa6.78□□□□□ -1.32
SCN9A-201ENST00000303354 GALR1P47211 349 aa6.78□□□□□ -1.32
SCN9A-201ENST00000303354 TWIST1Q15672 202 aa6.78□□□□□ -1.32
SCN9A-201ENST00000303354 MUC20Q8N307 709 aaPredicted RBP6.78□□□□□ -1.32
SCN9A-201ENST00000303354 NAT8BQ9UHF3 227 aa6.78□□□□□ -1.32
SCN9A-201ENST00000303354 CES1P1Q9UKY3 287 aa6.78□□□□□ -1.32
SCN9A-201ENST00000303354 MPC1Q9Y5U8 109 aa6.78□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms