RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 Q96M66 194 aa11.64□□□□□ -0.55
SKA3-201ENST00000298260 SLC46A1Q96NT5 459 aa11.64□□□□□ -0.55
SKA3-201ENST00000298260 P4HTMQ9NXG6 502 aa11.64□□□□□ -0.55
SKA3-201ENST00000298260 B3GAT1Q9P2W7 334 aa11.64□□□□□ -0.55
SKA3-201ENST00000298260 VAX2Q9UIW0 290 aa11.64□□□□□ -0.55
SKA3-201ENST00000298260 COL4A2P08572 1712 aa11.64□□□□□ -0.55
SKA3-201ENST00000298260 RALGAPA1Q6GYQ0 2036 aa11.64□□□□□ -0.55
SKA3-201ENST00000298260 GRIFINA4D1Z8 144 aa11.64□□□□□ -0.55
SKA3-201ENST00000298260 ZNHIT1O43257 154 aa11.64□□□□□ -0.55
SKA3-201ENST00000298260 SPINK2P20155 84 aa11.64□□□□□ -0.55
SKA3-201ENST00000298260 HSD17B7P56937 341 aa11.64□□□□□ -0.55
SKA3-201ENST00000298260 FBXW4P57775 412 aa11.64□□□□□ -0.55
SKA3-201ENST00000298260 PARM1Q6UWI2 310 aa11.64□□□□□ -0.55
SKA3-201ENST00000298260 TOMM20LQ6UXN7 152 aa11.64□□□□□ -0.55
SKA3-201ENST00000298260 DOK3Q7L591 496 aa11.64□□□□□ -0.55
SKA3-201ENST00000298260 SOHLH2Q9NX45 425 aa11.64□□□□□ -0.55
SKA3-201ENST00000298260 PRSS50Q9UI38 385 aa11.64□□□□□ -0.55
SKA3-201ENST00000298260 NAGKQ9UJ70 344 aa11.64□□□□□ -0.55
SKA3-201ENST00000298260 SDK2Q58EX2 2172 aa11.63□□□□□ -0.55
SKA3-201ENST00000298260 H7BYZ3 331 aa11.63□□□□□ -0.55
SKA3-201ENST00000298260 MPPED1O15442 326 aa11.63□□□□□ -0.55
SKA3-201ENST00000298260 SIAH2O43255 324 aa11.63□□□□□ -0.55
SKA3-201ENST00000298260 TSPAN2O60636 221 aa11.63□□□□□ -0.55
SKA3-201ENST00000298260 LCATP04180 440 aa11.63□□□□□ -0.55
SKA3-201ENST00000298260 CHRNA7P36544 502 aa11.63□□□□□ -0.55
SKA3-201ENST00000298260 RPS18P62269 152 aaKnown RBP11.63□□□□□ -0.55
SKA3-201ENST00000298260 MYBPHQ13203 477 aa11.63□□□□□ -0.55
SKA3-201ENST00000298260 ARL6IP1Q15041 203 aa11.63□□□□□ -0.55
SKA3-201ENST00000298260 TMEM196Q5HYL7 178 aa11.63□□□□□ -0.55
SKA3-201ENST00000298260 TBC1D26Q86UD7 250 aa11.63□□□□□ -0.55
SKA3-201ENST00000298260 LRTM2Q8N967 370 aa11.63□□□□□ -0.55
SKA3-201ENST00000298260 RNASE8Q8TDE3 154 aaKnown RBP11.63□□□□□ -0.55
SKA3-201ENST00000298260 TMEM242Q9NWH2 141 aa11.63□□□□□ -0.55
SKA3-201ENST00000298260 MTCH2Q9Y6C9 303 aa11.63□□□□□ -0.55
SKA3-201ENST00000298260 IGKV1-27A0A075B6S5 117 aa11.63□□□□□ -0.55
SKA3-201ENST00000298260 TRDCB7Z8K6 153 aa11.63□□□□□ -0.55
SKA3-201ENST00000298260 IGKV3-11P04433 115 aa11.63□□□□□ -0.55
SKA3-201ENST00000298260 EGR1P18146 543 aa11.63□□□□□ -0.55
SKA3-201ENST00000298260 GCH1P30793 250 aa11.63□□□□□ -0.55
SKA3-201ENST00000298260 BRS3P32247 399 aa11.63□□□□□ -0.55
SKA3-201ENST00000298260 GFERP55789 205 aa11.63□□□□□ -0.55
SKA3-201ENST00000298260 TAS2R30P59541 319 aa11.63□□□□□ -0.55
SKA3-201ENST00000298260 Q6ZSR6 202 aa11.63□□□□□ -0.55
SKA3-201ENST00000298260 OR13H1Q8NG92 308 aa11.63□□□□□ -0.55
SKA3-201ENST00000298260 MSL2Q9HCI7 577 aa11.63□□□□□ -0.55
SKA3-201ENST00000298260 Q9N2K0 584 aa11.63□□□□□ -0.55
SKA3-201ENST00000298260 A0A0G2JRQ6 117 aa11.62□□□□□ -0.55
SKA3-201ENST00000298260 HNRNPA1P09651 372 aaKnown RBP eCLIP11.62□□□□□ -0.55
SKA3-201ENST00000298260 GNRHRP30968 328 aa11.62□□□□□ -0.55
SKA3-201ENST00000298260 PAX9P55771 341 aa11.62□□□□□ -0.55
SKA3-201ENST00000298260 PNRC1Q12796 327 aaPredicted RBP11.62□□□□□ -0.55
SKA3-201ENST00000298260 TCF23Q7RTU1 214 aa11.62□□□□□ -0.55
SKA3-201ENST00000298260 GBGT1Q8N5D6 347 aa11.62□□□□□ -0.55
SKA3-201ENST00000298260 GNPNAT1Q96EK6 184 aaPredicted RBP11.62□□□□□ -0.55
SKA3-201ENST00000298260 MS4A10Q96PG2 267 aa11.62□□□□□ -0.55
SKA3-201ENST00000298260 TM2D1Q9BX74 207 aa11.62□□□□□ -0.55
SKA3-201ENST00000298260 TWSG1Q9GZX9 223 aa11.62□□□□□ -0.55
SKA3-201ENST00000298260 PLK3Q9H4B4 646 aa11.62□□□□□ -0.55
SKA3-201ENST00000298260 ZNF160Q9HCG1 818 aa11.62□□□□□ -0.55
SKA3-201ENST00000298260 CISD1Q9NZ45 108 aaKnown RBP11.62□□□□□ -0.55
SKA3-201ENST00000298260 CABIN1Q9Y6J0 2220 aa11.62□□□□□ -0.55
SKA3-201ENST00000298260 C3orf80F5H4A9 247 aa11.62□□□□□ -0.55
SKA3-201ENST00000298260 TP53I11O14683 189 aa11.62□□□□□ -0.55
SKA3-201ENST00000298260 LILRA1O75019 489 aa11.62□□□□□ -0.55
SKA3-201ENST00000298260 IAPPP10997 89 aa11.62□□□□□ -0.55
SKA3-201ENST00000298260 HERV-K104P61576 105 aa11.62□□□□□ -0.55
SKA3-201ENST00000298260 RPL23P62829 140 aaKnown RBP11.62□□□□□ -0.55
SKA3-201ENST00000298260 ARL16Q0P5N6 197 aa11.62□□□□□ -0.55
SKA3-201ENST00000298260 NSDHLQ15738 373 aa11.62□□□□□ -0.55
SKA3-201ENST00000298260 BSXQ3C1V8 233 aa11.62□□□□□ -0.55
SKA3-201ENST00000298260 ZNF573Q86YE8 665 aa11.62□□□□□ -0.55
SKA3-201ENST00000298260 OR8G5Q8NG78 346 aa11.62□□□□□ -0.55
SKA3-201ENST00000298260 TMEM170AQ8WVE7 144 aa11.62□□□□□ -0.55
SKA3-201ENST00000298260 SIGLEC12Q96PQ1 595 aa11.62□□□□□ -0.55
SKA3-201ENST00000298260 MRPL13Q9BYD1 178 aaKnown RBP11.62□□□□□ -0.55
SKA3-201ENST00000298260 PARD6AQ9NPB6 346 aa11.62□□□□□ -0.55
SKA3-201ENST00000298260 SLC7A10Q9NS82 523 aa11.62□□□□□ -0.55
SKA3-201ENST00000298260 HSPB6O14558 160 aa11.61□□□□□ -0.55
SKA3-201ENST00000298260 HBE1P02100 147 aa11.61□□□□□ -0.55
SKA3-201ENST00000298260 METTL15P1P0C7V9 234 aa11.61□□□□□ -0.55
SKA3-201ENST00000298260 CDKN1AP38936 164 aa11.61□□□□□ -0.55
SKA3-201ENST00000298260 ECI1P42126 302 aa11.61□□□□□ -0.55
SKA3-201ENST00000298260 COA6Q5JTJ3 125 aaKnown RBP11.61□□□□□ -0.55
SKA3-201ENST00000298260 ETFRF1Q6IPR1 90 aa11.61□□□□□ -0.55
SKA3-201ENST00000298260 TIPARPQ7Z3E1 657 aaKnown RBP11.61□□□□□ -0.55
SKA3-201ENST00000298260 SELENOHQ8IZQ5 122 aaKnown RBP11.61□□□□□ -0.55
SKA3-201ENST00000298260 SLC22A18ASQ8N1D0 253 aa11.61□□□□□ -0.55
SKA3-201ENST00000298260 OR5L2Q8NGL0 311 aa11.61□□□□□ -0.55
SKA3-201ENST00000298260 ATP5SQ99766 215 aa11.61□□□□□ -0.55
SKA3-201ENST00000298260 ZNF576Q9H609 170 aa11.61□□□□□ -0.55
SKA3-201ENST00000298260 DNAJC4Q9NNZ3 241 aa11.61□□□□□ -0.55
SKA3-201ENST00000298260 KIR2DL5BA0A0G2JN68 375 aa11.61□□□□□ -0.55
SKA3-201ENST00000298260 KIR2DL5BA0A0G2JPC4 375 aa11.61□□□□□ -0.55
SKA3-201ENST00000298260 APODP05090 189 aa11.61□□□□□ -0.55
SKA3-201ENST00000298260 ZNF92Q03936 586 aa11.61□□□□□ -0.55
SKA3-201ENST00000298260 SNAI3Q3KNW1 292 aa11.61□□□□□ -0.55
SKA3-201ENST00000298260 ZNF818PQ6ZRF7 136 aa11.61□□□□□ -0.55
SKA3-201ENST00000298260 KIR2DL5AQ8N109 375 aa11.61□□□□□ -0.55
SKA3-201ENST00000298260 OR1K1Q8NGR3 316 aa11.61□□□□□ -0.55
SKA3-201ENST00000298260 POC1BQ8TC44 478 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms