RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 ADAP1O75689 374 aa11.23□□□□□ -0.61
USP40-201ENST00000251722 IGHA2P01877 340 aa11.23□□□□□ -0.61
USP40-201ENST00000251722 FCARP24071 287 aa11.23□□□□□ -0.61
USP40-201ENST00000251722 GUCA2BQ16661 112 aa11.23□□□□□ -0.61
USP40-201ENST00000251722 TMEM30BQ3MIR4 351 aa11.23□□□□□ -0.61
USP40-201ENST00000251722 MRPL52Q86TS9 123 aaKnown RBP11.23□□□□□ -0.61
USP40-201ENST00000251722 SLC25A42Q86VD7 318 aa11.23□□□□□ -0.61
USP40-201ENST00000251722 TUSC5Q8IXB3 177 aa11.23□□□□□ -0.61
USP40-201ENST00000251722 DOK5Q9P104 306 aa11.23□□□□□ -0.61
USP40-201ENST00000251722 ERRFI1Q9UJM3 462 aaPredicted RBP11.23□□□□□ -0.61
USP40-201ENST00000251722 A0A1B0GTL3 188 aa11.23□□□□□ -0.61
USP40-201ENST00000251722 KCNAB3O43448 404 aa11.23□□□□□ -0.61
USP40-201ENST00000251722 IGF2P01344 180 aa11.23□□□□□ -0.61
USP40-201ENST00000251722 DCTDP32321 178 aa11.23□□□□□ -0.61
USP40-201ENST00000251722 PPOXP50336 477 aa11.23□□□□□ -0.61
USP40-201ENST00000251722 KLRB1Q12918 225 aa11.23□□□□□ -0.61
USP40-201ENST00000251722 NUDT8Q8WV74 236 aa11.23□□□□□ -0.61
USP40-201ENST00000251722 NRIP2Q9BQI9 281 aa11.23□□□□□ -0.61
USP40-201ENST00000251722 ISG20L2Q9H9L3 353 aaKnown RBP11.23□□□□□ -0.61
USP40-201ENST00000251722 C7orf66A4D0T2 115 aa11.23□□□□□ -0.61
USP40-201ENST00000251722 OR2W5A6NFC9 320 aa11.23□□□□□ -0.61
USP40-201ENST00000251722 ZNF785A8K8V0 405 aa11.23□□□□□ -0.61
USP40-201ENST00000251722 ITGB1BP1O14713 200 aa11.23□□□□□ -0.61
USP40-201ENST00000251722 BGLAPP02818 100 aa11.23□□□□□ -0.61
USP40-201ENST00000251722 SMIM17P0DL12 118 aa11.23□□□□□ -0.61
USP40-201ENST00000251722 CD200P41217 278 aa11.23□□□□□ -0.61
USP40-201ENST00000251722 SUCLG1P53597 346 aaKnown RBP11.23□□□□□ -0.61
USP40-201ENST00000251722 SSX1Q16384 188 aa11.23□□□□□ -0.61
USP40-201ENST00000251722 ALKBH6Q3KRA9 238 aa11.23□□□□□ -0.61
USP40-201ENST00000251722 TMEM179BQ7Z7N9 219 aa11.23□□□□□ -0.61
USP40-201ENST00000251722 AMER3Q8N944 861 aa11.23□□□□□ -0.61
USP40-201ENST00000251722 GP6Q9HCN6 339 aa11.23□□□□□ -0.61
USP40-201ENST00000251722 SPANXA1Q9NS26 97 aa11.23□□□□□ -0.61
USP40-201ENST00000251722 NRXN2Q9P2S2 1712 aa11.23□□□□□ -0.61
USP40-201ENST00000251722 ARFGEF1Q9Y6D6 1849 aa11.23□□□□□ -0.61
USP40-201ENST00000251722 ASPDHA6ND91 283 aa11.23□□□□□ -0.61
USP40-201ENST00000251722 PRKNO60260 465 aaPredicted RBP11.23□□□□□ -0.61
USP40-201ENST00000251722 CD3DP04234 171 aa11.23□□□□□ -0.61
USP40-201ENST00000251722 ELLP55199 621 aaPredicted RBP11.23□□□□□ -0.61
USP40-201ENST00000251722 TMEM97Q5BJF2 176 aa11.23□□□□□ -0.61
USP40-201ENST00000251722 CLEC2AQ6UVW9 174 aa11.23□□□□□ -0.61
USP40-201ENST00000251722 MSRB3Q8IXL7 192 aa11.23□□□□□ -0.61
USP40-201ENST00000251722 PATE3B3GLJ2 98 aa11.22□□□□□ -0.61
USP40-201ENST00000251722 TRDCB7Z8K6 153 aa11.22□□□□□ -0.61
USP40-201ENST00000251722 CCL3P10147 92 aa11.22□□□□□ -0.61
USP40-201ENST00000251722 HOXB3P14651 431 aaPredicted RBP11.22□□□□□ -0.61
USP40-201ENST00000251722 ACP1P24666 158 aa11.22□□□□□ -0.61
USP40-201ENST00000251722 ATP5IP56385 69 aaPredicted RBP11.22□□□□□ -0.61
USP40-201ENST00000251722 OR1L6Q8NGR2 347 aa11.22□□□□□ -0.61
USP40-201ENST00000251722 SCARF2Q96GP6 870 aaPredicted RBP11.22□□□□□ -0.61
USP40-201ENST00000251722 ZNF48Q96MX3 618 aaPredicted RBP11.22□□□□□ -0.61
USP40-201ENST00000251722 WDR61Q9GZS3 305 aaKnown RBP11.22□□□□□ -0.61
USP40-201ENST00000251722 UBE2CO00762 179 aa11.22□□□□□ -0.61
USP40-201ENST00000251722 CHEK1O14757 476 aa11.22□□□□□ -0.61
USP40-201ENST00000251722 FOXS1O43638 330 aa11.22□□□□□ -0.61
USP40-201ENST00000251722 CDC14BO60729 498 aa11.22□□□□□ -0.61
USP40-201ENST00000251722 TMEM241Q24JQ0 296 aa11.22□□□□□ -0.61
USP40-201ENST00000251722 LYG1Q8N1E2 194 aa11.22□□□□□ -0.61
USP40-201ENST00000251722 MARCH1Q8TCQ1 289 aa11.22□□□□□ -0.61
USP40-201ENST00000251722 LHX4Q969G2 390 aa11.22□□□□□ -0.61
USP40-201ENST00000251722 RASL11BQ9BPW5 248 aa11.22□□□□□ -0.61
USP40-201ENST00000251722 OR1A1Q9P1Q5 309 aa11.22□□□□□ -0.61
USP40-201ENST00000251722 CLCF1Q9UBD9 225 aa11.22□□□□□ -0.61
USP40-201ENST00000251722 PEF1Q9UBV8 284 aaKnown RBP11.22□□□□□ -0.61
USP40-201ENST00000251722 V9GYH0 126 aa11.22□□□□□ -0.61
USP40-201ENST00000251722 RBBP6Q7Z6E9 1792 aaKnown RBP11.22□□□□□ -0.61
USP40-201ENST00000251722 COL4A5P29400 1685 aa11.22□□□□□ -0.61
USP40-201ENST00000251722 PRSS47A8MTI9 375 aa11.22□□□□□ -0.61
USP40-201ENST00000251722 GEMIN2O14893 280 aaKnown RBP11.22□□□□□ -0.61
USP40-201ENST00000251722 FAM3BP58499 235 aaPredicted RBP11.22□□□□□ -0.61
USP40-201ENST00000251722 FMODQ06828 376 aa11.22□□□□□ -0.61
USP40-201ENST00000251722 ANKRD34AQ69YU3 496 aa11.22□□□□□ -0.61
USP40-201ENST00000251722 SLC45A2Q9UMX9 530 aa11.22□□□□□ -0.61
USP40-201ENST00000251722 OR2T10Q8NGZ9 312 aa11.22□□□□□ -0.61
USP40-201ENST00000251722 SIGMAR1Q99720 223 aa11.22□□□□□ -0.61
USP40-201ENST00000251722 SFXN3Q9BWM7 321 aa11.22□□□□□ -0.61
USP40-201ENST00000251722 VCX2Q9H322 139 aa11.22□□□□□ -0.61
USP40-201ENST00000251722 PARP11Q9NR21 331 aa11.22□□□□□ -0.61
USP40-201ENST00000251722 COA4Q9NYJ1 87 aa11.22□□□□□ -0.61
USP40-201ENST00000251722 XIRP1Q702N8 1843 aaKnown RBP11.22□□□□□ -0.61
USP40-201ENST00000251722 CEACAM1P13688 526 aa11.22□□□□□ -0.61
USP40-201ENST00000251722 AMTP48728 403 aa11.22□□□□□ -0.61
USP40-201ENST00000251722 NHLRC3Q5JS37 347 aa11.22□□□□□ -0.61
USP40-201ENST00000251722 OR11H7Q8NGC8 314 aa11.22□□□□□ -0.61
USP40-201ENST00000251722 OR1P1Q8NH06 330 aa11.22□□□□□ -0.61
USP40-201ENST00000251722 SPACA5Q96QH8 159 aa11.22□□□□□ -0.61
USP40-201ENST00000251722 PECRQ9BY49 303 aa11.22□□□□□ -0.61
USP40-201ENST00000251722 ELOVL5Q9NYP7 299 aa11.22□□□□□ -0.61
USP40-201ENST00000251722 J3QW42 95 aa11.21□□□□□ -0.61
USP40-201ENST00000251722 SLC25A6P12236 298 aa11.21□□□□□ -0.61
USP40-201ENST00000251722 CRISP2P16562 243 aa11.21□□□□□ -0.61
USP40-201ENST00000251722 CDKN2AP42771 156 aaKnown RBP11.21□□□□□ -0.61
USP40-201ENST00000251722 INPP5JQ15735 1006 aaPredicted RBP11.21□□□□□ -0.61
USP40-201ENST00000251722 DERL3Q96Q80 235 aa11.21□□□□□ -0.61
USP40-201ENST00000251722 C20orf141Q9NUB4 165 aa11.21□□□□□ -0.61
USP40-201ENST00000251722 A8MXK9 166 aa11.21□□□□□ -0.61
USP40-201ENST00000251722 CD1AP06126 327 aa11.21□□□□□ -0.61
USP40-201ENST00000251722 HERPUD1Q15011 391 aa11.21□□□□□ -0.61
USP40-201ENST00000251722 PMCHL1Q16048 86 aa11.21□□□□□ -0.61
USP40-201ENST00000251722 ZNF770Q6IQ21 691 aaPredicted RBP11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms