RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 TRGC1P0CF51 173 aa10.64□□□□□ -0.71
NUP88-201ENST00000225696 BCL3P20749 454 aa10.64□□□□□ -0.71
NUP88-201ENST00000225696 VAMP2P63027 116 aa10.64□□□□□ -0.71
NUP88-201ENST00000225696 FAM90A2PQ658T7 463 aa10.64□□□□□ -0.71
NUP88-201ENST00000225696 THNSL2Q86YJ6 484 aa10.64□□□□□ -0.71
NUP88-201ENST00000225696 GPR137CQ8N3F9 429 aa10.64□□□□□ -0.71
NUP88-201ENST00000225696 IL22RA1Q8N6P7 574 aa10.64□□□□□ -0.71
NUP88-201ENST00000225696 CCDC54Q8NEL0 328 aa10.64□□□□□ -0.71
NUP88-201ENST00000225696 C14orf144Q96I85 54 aa10.64□□□□□ -0.71
NUP88-201ENST00000225696 RSG1Q9BU20 258 aa10.64□□□□□ -0.71
NUP88-201ENST00000225696 GNG13Q9P2W3 67 aa10.64□□□□□ -0.71
NUP88-201ENST00000225696 NCKAP5O14513 1909 aa10.64□□□□□ -0.71
NUP88-201ENST00000225696 ARHGAP21Q5T5U3 1957 aa10.64□□□□□ -0.71
NUP88-201ENST00000225696 KIAA1549Q9HCM3 1950 aa10.64□□□□□ -0.71
NUP88-201ENST00000225696 CHD3Q12873 2000 aaKnown RBP10.64□□□□□ -0.71
NUP88-201ENST00000225696 KIAA2026Q5HYC2 2103 aa10.64□□□□□ -0.71
NUP88-201ENST00000225696 DIDO1Q9BTC0 2240 aaKnown RBP10.64□□□□□ -0.71
NUP88-201ENST00000225696 SEC14L6B5MCN3 397 aa10.63□□□□□ -0.71
NUP88-201ENST00000225696 BCAT2O15382 392 aaPredicted RBP10.63□□□□□ -0.71
NUP88-201ENST00000225696 YKT6O15498 198 aa10.63□□□□□ -0.71
NUP88-201ENST00000225696 VAMP5O95183 116 aa10.63□□□□□ -0.71
NUP88-201ENST00000225696 FABP4P15090 132 aa10.63□□□□□ -0.71
NUP88-201ENST00000225696 FUT6P51993 359 aa10.63□□□□□ -0.71
NUP88-201ENST00000225696 FGF8P55075 233 aaPredicted RBP10.63□□□□□ -0.71
NUP88-201ENST00000225696 RPS18P62269 152 aaKnown RBP10.63□□□□□ -0.71
NUP88-201ENST00000225696 RAB11AP62491 216 aa10.63□□□□□ -0.71
NUP88-201ENST00000225696 TLE1Q04724 770 aa10.63□□□□□ -0.71
NUP88-201ENST00000225696 ZFP36L1Q07352 338 aaKnown RBP10.63□□□□□ -0.71
NUP88-201ENST00000225696 TMEM267Q0VDI3 215 aaPredicted RBP10.63□□□□□ -0.71
NUP88-201ENST00000225696 KRTAP27-1Q3LI81 207 aa10.63□□□□□ -0.71
NUP88-201ENST00000225696 TRIM61Q5EBN2 209 aa10.63□□□□□ -0.71
NUP88-201ENST00000225696 AKR1C8PQ5T2L2 129 aa10.63□□□□□ -0.71
NUP88-201ENST00000225696 OR2T2Q6IF00 324 aa10.63□□□□□ -0.71
NUP88-201ENST00000225696 MRPL14Q6P1L8 145 aaKnown RBP10.63□□□□□ -0.71
NUP88-201ENST00000225696 YRDCQ86U90 279 aaKnown RBP10.63□□□□□ -0.71
NUP88-201ENST00000225696 PLSCR2Q9NRY7 297 aa10.63□□□□□ -0.71
NUP88-201ENST00000225696 IL36GQ9NZH8 169 aa10.63□□□□□ -0.71
NUP88-201ENST00000225696 DKKL1Q9UK85 242 aa10.63□□□□□ -0.71
NUP88-201ENST00000225696 NOSIPQ9Y314 301 aaKnown RBP10.63□□□□□ -0.71
NUP88-201ENST00000225696 LY6G6EA0A0G2JKS1 128 aa10.63□□□□□ -0.71
NUP88-201ENST00000225696 ZFP92A6NM28 416 aa10.63□□□□□ -0.71
NUP88-201ENST00000225696 HSPA12AO43301 675 aa10.63□□□□□ -0.71
NUP88-201ENST00000225696 F10P00742 488 aa10.63□□□□□ -0.71
NUP88-201ENST00000225696 CCL2P13500 99 aa10.63□□□□□ -0.71
NUP88-201ENST00000225696 FKBP2P26885 142 aaKnown RBP10.63□□□□□ -0.71
NUP88-201ENST00000225696 ZNF726P1Q15940 193 aa10.63□□□□□ -0.71
NUP88-201ENST00000225696 ZNF880Q6PDB4 577 aa10.63□□□□□ -0.71
NUP88-201ENST00000225696 C20orf204Q6ZNR8 217 aa10.63□□□□□ -0.71
NUP88-201ENST00000225696 Q6ZRM9 215 aa10.63□□□□□ -0.71
NUP88-201ENST00000225696 CPEB3Q8NE35 698 aaKnown RBP10.63□□□□□ -0.71
NUP88-201ENST00000225696 CCDC74BQ96LY2 380 aa10.63□□□□□ -0.71
NUP88-201ENST00000225696 OR2H1Q9GZK4 316 aa10.63□□□□□ -0.71
NUP88-201ENST00000225696 SLC25A31Q9H0C2 315 aa10.63□□□□□ -0.71
NUP88-201ENST00000225696 PRO1933Q9H354 126 aa10.63□□□□□ -0.71
NUP88-201ENST00000225696 ZNF665Q9H7R5 613 aa10.63□□□□□ -0.71
NUP88-201ENST00000225696 U3KQA8 63 aa10.63□□□□□ -0.71
NUP88-201ENST00000225696 BTBD17A6NE02 478 aa10.62□□□□□ -0.71
NUP88-201ENST00000225696 RPL36A-HNRNPH2H7BZ11 118 aa10.62□□□□□ -0.71
NUP88-201ENST00000225696 PHOX2AO14813 284 aa10.62□□□□□ -0.71
NUP88-201ENST00000225696 UMODP07911 640 aa10.62□□□□□ -0.71
NUP88-201ENST00000225696 CST2P09228 141 aa10.62□□□□□ -0.71
NUP88-201ENST00000225696 HIST1H1BP16401 226 aaKnown RBP10.62□□□□□ -0.71
NUP88-201ENST00000225696 CD200P41217 278 aa10.62□□□□□ -0.71
NUP88-201ENST00000225696 PI4KAP42356 2102 aa10.62□□□□□ -0.71
NUP88-201ENST00000225696 DSCR4P56555 118 aaPredicted RBP10.62□□□□□ -0.71
NUP88-201ENST00000225696 HLA-DRB3P79483 266 aa10.62□□□□□ -0.71
NUP88-201ENST00000225696 DEFA6Q01524 100 aa10.62□□□□□ -0.71
NUP88-201ENST00000225696 OR8B8Q15620 311 aa10.62□□□□□ -0.71
NUP88-201ENST00000225696 CEACAM16Q2WEN9 425 aa10.62□□□□□ -0.71
NUP88-201ENST00000225696 OR8G5Q8NG78 346 aa10.62□□□□□ -0.71
NUP88-201ENST00000225696 SMOC1Q9H4F8 434 aa10.62□□□□□ -0.71
NUP88-201ENST00000225696 UNKLQ9H9P5 680 aaKnown RBP10.62□□□□□ -0.71
NUP88-201ENST00000225696 Q9N2K0 584 aa10.62□□□□□ -0.71
NUP88-201ENST00000225696 RPRMQ9NS64 109 aa10.62□□□□□ -0.71
NUP88-201ENST00000225696 DOCK7Q96N67 2140 aa10.62□□□□□ -0.71
NUP88-201ENST00000225696 LOC102723971A0A1B0GUV8 181 aa10.62□□□□□ -0.71
NUP88-201ENST00000225696 PPP1R2P9O14990 202 aa10.62□□□□□ -0.71
NUP88-201ENST00000225696 CD55P08174 381 aa10.62□□□□□ -0.71
NUP88-201ENST00000225696 RNF224P0DH78 156 aa10.62□□□□□ -0.71
NUP88-201ENST00000225696 PGA5P0DJD9 388 aa10.62□□□□□ -0.71
NUP88-201ENST00000225696 VDAC1P21796 283 aa10.62□□□□□ -0.71
NUP88-201ENST00000225696 UCP1P25874 307 aa10.62□□□□□ -0.71
NUP88-201ENST00000225696 TAS2R30P59541 319 aa10.62□□□□□ -0.71
NUP88-201ENST00000225696 ARL16Q0P5N6 197 aa10.62□□□□□ -0.71
NUP88-201ENST00000225696 LCN15Q6UWW0 184 aa10.62□□□□□ -0.71
NUP88-201ENST00000225696 SLC35E3Q7Z769 313 aa10.62□□□□□ -0.71
NUP88-201ENST00000225696 FAM210BQ96KR6 192 aa10.62□□□□□ -0.71
NUP88-201ENST00000225696 ATP5SQ99766 215 aa10.62□□□□□ -0.71
NUP88-201ENST00000225696 A0A087WZY1 265 aa10.61□□□□□ -0.71
NUP88-201ENST00000225696 IGHV1-45A0A0A0MS14 117 aa10.61□□□□□ -0.71
NUP88-201ENST00000225696 A0A1B0GV90 55 aa10.61□□□□□ -0.71
NUP88-201ENST00000225696 CLEC18AA5D8T8 446 aa10.61□□□□□ -0.71
NUP88-201ENST00000225696 ZNF716A6NP11 495 aa10.61□□□□□ -0.71
NUP88-201ENST00000225696 KIAA1324LA8MWY0 1029 aaPredicted RBP10.61□□□□□ -0.71
NUP88-201ENST00000225696 NAPSAO96009 420 aa10.61□□□□□ -0.71
NUP88-201ENST00000225696 TK1P04183 234 aa10.61□□□□□ -0.71
NUP88-201ENST00000225696 RFPL3SP0C7P2 107 aa10.61□□□□□ -0.71
NUP88-201ENST00000225696 CEACAM1P13688 526 aa10.61□□□□□ -0.71
NUP88-201ENST00000225696 B3GALT5-AS1P59052 145 aa10.61□□□□□ -0.71
NUP88-201ENST00000225696 RAC1P63000 192 aa10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms