RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 RAC2P15153 192 aa13.32□□□□□ -0.28
CLN3-251ENST00000636853 GLP1RP43220 463 aa13.32□□□□□ -0.28
CLN3-251ENST00000636853 UBA52P62987 128 aaKnown RBP13.32□□□□□ -0.28
CLN3-251ENST00000636853 CYCSP99999 105 aaKnown RBP13.32□□□□□ -0.28
CLN3-251ENST00000636853 SP6Q3SY56 376 aa13.32□□□□□ -0.28
CLN3-251ENST00000636853 ACOT7LQ6ZUV0 252 aa13.32□□□□□ -0.28
CLN3-251ENST00000636853 KLF14Q8TD94 323 aaPredicted RBP13.32□□□□□ -0.28
CLN3-251ENST00000636853 RNF126Q9BV68 326 aa13.32□□□□□ -0.28
CLN3-251ENST00000636853 ZNF71Q9NQZ8 489 aaPredicted RBP13.32□□□□□ -0.28
CLN3-251ENST00000636853 MBD3L4A6NDZ8 208 aaPredicted RBP13.32□□□□□ -0.28
CLN3-251ENST00000636853 MBD3L3A6NE82 208 aaPredicted RBP13.32□□□□□ -0.28
CLN3-251ENST00000636853 MBD3L5A6NJ08 208 aaPredicted RBP13.32□□□□□ -0.28
CLN3-251ENST00000636853 POM121CA8CG34 1229 aa13.32□□□□□ -0.28
CLN3-251ENST00000636853 H0YIZ8 118 aa13.32□□□□□ -0.28
CLN3-251ENST00000636853 H0YL77 283 aa13.32□□□□□ -0.28
CLN3-251ENST00000636853 OR2F2O95006 317 aa13.32□□□□□ -0.28
CLN3-251ENST00000636853 SCTP09683 121 aa13.32□□□□□ -0.28
CLN3-251ENST00000636853 CECR9P0C854 216 aa13.32□□□□□ -0.28
CLN3-251ENST00000636853 SELEP16581 610 aa13.32□□□□□ -0.28
CLN3-251ENST00000636853 OR2F1Q13607 317 aa13.32□□□□□ -0.28
CLN3-251ENST00000636853 ABCA11PQ4W5N1 156 aa13.32□□□□□ -0.28
CLN3-251ENST00000636853 SCCPDHQ8NBX0 429 aa13.32□□□□□ -0.28
CLN3-251ENST00000636853 MBD3L2Q8NHZ7 208 aaPredicted RBP13.32□□□□□ -0.28
CLN3-251ENST00000636853 DCUN1D4Q92564 292 aa13.32□□□□□ -0.28
CLN3-251ENST00000636853 MOB3AQ96BX8 217 aa13.32□□□□□ -0.28
CLN3-251ENST00000636853 PLK3Q9H4B4 646 aa13.32□□□□□ -0.28
CLN3-251ENST00000636853 C1orf123Q9NWV4 160 aa13.32□□□□□ -0.28
CLN3-251ENST00000636853 GSKIPQ9P0R6 139 aa13.32□□□□□ -0.28
CLN3-251ENST00000636853 TRAV24A0A0B4J272 114 aa13.31□□□□□ -0.28
CLN3-251ENST00000636853 IQCF6A8MYZ5 107 aa13.31□□□□□ -0.28
CLN3-251ENST00000636853 LGALS8O00214 317 aa13.31□□□□□ -0.28
CLN3-251ENST00000636853 GLI4P10075 376 aa13.31□□□□□ -0.28
CLN3-251ENST00000636853 ZNF345Q14585 488 aa13.31□□□□□ -0.28
CLN3-251ENST00000636853 INO80EQ8NBZ0 244 aaPredicted RBP13.31□□□□□ -0.28
CLN3-251ENST00000636853 OR11L1Q8NGX0 322 aa13.31□□□□□ -0.28
CLN3-251ENST00000636853 FZR1Q9UM11 496 aa13.31□□□□□ -0.28
CLN3-251ENST00000636853 KANTRA0A1W2PQU2 76 aa13.3□□□□□ -0.28
CLN3-251ENST00000636853 LRP5LA4QPB2 252 aa13.3□□□□□ -0.28
CLN3-251ENST00000636853 RLN2P04090 185 aa13.3□□□□□ -0.28
CLN3-251ENST00000636853 HOXA1P49639 335 aaPredicted RBP13.3□□□□□ -0.28
CLN3-251ENST00000636853 HERV-K104P61576 105 aa13.3□□□□□ -0.28
CLN3-251ENST00000636853 FOXC1Q12948 553 aa13.3□□□□□ -0.28
CLN3-251ENST00000636853 ZNF154Q13106 437 aa13.3□□□□□ -0.28
CLN3-251ENST00000636853 RBM39Q14498 530 aaKnown RBP13.3□□□□□ -0.28
CLN3-251ENST00000636853 FAM76BQ5HYJ3 339 aa13.3□□□□□ -0.28
CLN3-251ENST00000636853 C20orf204Q6ZNR8 217 aa13.3□□□□□ -0.28
CLN3-251ENST00000636853 RTN4IP1Q8WWV3 396 aaPredicted RBP13.3□□□□□ -0.28
CLN3-251ENST00000636853 BOD1Q96IK1 185 aa13.3□□□□□ -0.28
CLN3-251ENST00000636853 C2orf50Q96LR7 162 aa13.3□□□□□ -0.28
CLN3-251ENST00000636853 SLC2A9Q9NRM0 540 aa13.3□□□□□ -0.28
CLN3-251ENST00000636853 PURGQ9UJV8 347 aaKnown RBP13.3□□□□□ -0.28
CLN3-251ENST00000636853 TINAGQ9UJW2 476 aa13.3□□□□□ -0.28
CLN3-251ENST00000636853 FAM215AQ9Y5M1 114 aa13.3□□□□□ -0.28
CLN3-251ENST00000636853 CDIPTO14735 213 aa13.3□□□□□ -0.28
CLN3-251ENST00000636853 PPYP01298 95 aa13.3□□□□□ -0.28
CLN3-251ENST00000636853 GRPP07492 148 aa13.3□□□□□ -0.28
CLN3-251ENST00000636853 OR5AC1P0C628 307 aa13.3□□□□□ -0.28
CLN3-251ENST00000636853 S100A12P80511 92 aa13.3□□□□□ -0.28
CLN3-251ENST00000636853 UQCC3Q6UW78 93 aa13.3□□□□□ -0.28
CLN3-251ENST00000636853 BHLHA15Q7RTS1 189 aaPredicted RBP13.3□□□□□ -0.28
CLN3-251ENST00000636853 LINC00596Q86U02 117 aa13.3□□□□□ -0.28
CLN3-251ENST00000636853 POC1AQ8NBT0 407 aa13.3□□□□□ -0.28
CLN3-251ENST00000636853 NAA60Q9H7X0 242 aa13.3□□□□□ -0.28
CLN3-251ENST00000636853 RASL12Q9NYN1 266 aa13.3□□□□□ -0.28
CLN3-251ENST00000636853 OR5AC2Q9NZP5 309 aa13.3□□□□□ -0.28
CLN3-251ENST00000636853 NDRG3Q9UGV2 375 aa13.3□□□□□ -0.28
CLN3-251ENST00000636853 ARID1AO14497 2285 aa13.3□□□□□ -0.28
CLN3-251ENST00000636853 HEATR1Q9H583 2144 aaKnown RBP13.3□□□□□ -0.28
CLN3-251ENST00000636853 BSNQ9UPA5 3926 aa13.3□□□□□ -0.28
CLN3-251ENST00000636853 BCL2L11O43521 198 aa13.29□□□□□ -0.28
CLN3-251ENST00000636853 ZNF44P15621 663 aa13.29□□□□□ -0.28
CLN3-251ENST00000636853 EIF2S3P41091 472 aaKnown RBP13.29□□□□□ -0.28
CLN3-251ENST00000636853 RAB32Q13637 225 aa13.29□□□□□ -0.28
CLN3-251ENST00000636853 IL13RA2Q14627 380 aa13.29□□□□□ -0.28
CLN3-251ENST00000636853 HERPUD1Q15011 391 aa13.29□□□□□ -0.28
CLN3-251ENST00000636853 OR8G1Q15617 311 aa13.29□□□□□ -0.28
CLN3-251ENST00000636853 ALKBH2Q6NS38 261 aa13.29□□□□□ -0.28
CLN3-251ENST00000636853 Q6ZS49 121 aa13.29□□□□□ -0.28
CLN3-251ENST00000636853 ST8SIA2Q92186 375 aa13.29□□□□□ -0.28
CLN3-251ENST00000636853 RRNAD1Q96FB5 475 aaKnown RBP13.29□□□□□ -0.28
CLN3-251ENST00000636853 PIK3IP1Q96FE7 263 aa13.29□□□□□ -0.28
CLN3-251ENST00000636853 DMRTA2Q96SC8 542 aa13.29□□□□□ -0.28
CLN3-251ENST00000636853 SPACA1Q9HBV2 294 aa13.29□□□□□ -0.28
CLN3-251ENST00000636853 KCNIP3Q9Y2W7 256 aa13.29□□□□□ -0.28
CLN3-251ENST00000636853 IGHV1-18A0A0C4DH31 117 aa13.29□□□□□ -0.28
CLN3-251ENST00000636853 DEGS1O15121 323 aa13.29□□□□□ -0.28
CLN3-251ENST00000636853 LUMP51884 338 aaPredicted RBP13.29□□□□□ -0.28
CLN3-251ENST00000636853 MRPL30Q8TCC3 161 aaKnown RBP13.29□□□□□ -0.28
CLN3-251ENST00000636853 MRPL24Q96A35 216 aaKnown RBP13.29□□□□□ -0.28
CLN3-251ENST00000636853 PHYHIPLQ96FC7 376 aa13.29□□□□□ -0.28
CLN3-251ENST00000636853 ZNF471Q9BX82 626 aaPredicted RBP13.29□□□□□ -0.28
CLN3-251ENST00000636853 OBP2BQ9NPH6 170 aa13.29□□□□□ -0.28
CLN3-251ENST00000636853 DMXL2Q8TDJ6 3036 aa13.29□□□□□ -0.28
CLN3-251ENST00000636853 ATMQ13315 3056 aa13.28□□□□□ -0.28
CLN3-251ENST00000636853 IGLV1-44P01699 117 aa13.28□□□□□ -0.28
CLN3-251ENST00000636853 APOC3P02656 99 aa13.28□□□□□ -0.28
CLN3-251ENST00000636853 UCP3P55916 312 aa13.28□□□□□ -0.28
CLN3-251ENST00000636853 TMEM187Q14656 261 aa13.28□□□□□ -0.28
CLN3-251ENST00000636853 P2RY6Q15077 328 aa13.28□□□□□ -0.28
CLN3-251ENST00000636853 SRSF7Q16629 238 aaKnown RBP eCLIP13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms