RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 NPTNQ9Y639 398 aa16.84■□□□□ 0.29
CLN3-250ENST00000636839 DANCRP0C864 163 aa16.83■□□□□ 0.28
CLN3-250ENST00000636839 GSTT2P0CG29 244 aa16.83■□□□□ 0.28
CLN3-250ENST00000636839 CHRFAM7AQ494W8 412 aa16.83■□□□□ 0.28
CLN3-250ENST00000636839 BTN2A1Q7KYR7 527 aa16.83■□□□□ 0.28
CLN3-250ENST00000636839 TPRX1Q8N7U7 411 aa16.83■□□□□ 0.28
CLN3-250ENST00000636839 ZNRF1Q8ND25 227 aa16.83■□□□□ 0.28
CLN3-250ENST00000636839 OR5AP2Q8NGF4 316 aa16.83■□□□□ 0.28
CLN3-250ENST00000636839 OR13C8Q8NGS7 320 aa16.83■□□□□ 0.28
CLN3-250ENST00000636839 OR5H2Q8NGV7 314 aa16.83■□□□□ 0.28
CLN3-250ENST00000636839 OR11L1Q8NGX0 322 aa16.83■□□□□ 0.28
CLN3-250ENST00000636839 ERGIC1Q969X5 290 aa16.83■□□□□ 0.28
CLN3-250ENST00000636839 GINS4Q9BRT9 223 aa16.83■□□□□ 0.28
CLN3-250ENST00000636839 SHARPINQ9H0F6 387 aa16.83■□□□□ 0.28
CLN3-250ENST00000636839 UBTD1Q9HAC8 227 aa16.83■□□□□ 0.28
CLN3-250ENST00000636839 A1L4Q6 167 aa16.82■□□□□ 0.28
CLN3-250ENST00000636839 ARPC1BO15143 372 aaKnown RBP16.82■□□□□ 0.28
CLN3-250ENST00000636839 NDUFB6O95139 128 aa16.82■□□□□ 0.28
CLN3-250ENST00000636839 OR3A1P47881 315 aa16.82■□□□□ 0.28
CLN3-250ENST00000636839 AESQ08117 197 aa16.82■□□□□ 0.28
CLN3-250ENST00000636839 C11orf71Q6IPW1 123 aa16.82■□□□□ 0.28
CLN3-250ENST00000636839 ASCC1Q8N9N2 400 aaKnown RBP16.82■□□□□ 0.28
CLN3-250ENST00000636839 ANGPTL6Q8NI99 470 aa16.82■□□□□ 0.28
CLN3-250ENST00000636839 CREB3L1Q96BA8 519 aa16.82■□□□□ 0.28
CLN3-250ENST00000636839 TMPRSS13Q9BYE2 586 aa16.82■□□□□ 0.28
CLN3-250ENST00000636839 LIME1Q9H400 295 aa16.82■□□□□ 0.28
CLN3-250ENST00000636839 Q9N2K0 584 aa16.82■□□□□ 0.28
CLN3-250ENST00000636839 CBLN4Q9NTU7 201 aa16.82■□□□□ 0.28
CLN3-250ENST00000636839 GLS2Q9UI32 602 aa16.82■□□□□ 0.28
CLN3-250ENST00000636839 NUBP2Q9Y5Y2 271 aa16.82■□□□□ 0.28
CLN3-250ENST00000636839 DSCAMO60469 2012 aa16.82■□□□□ 0.28
CLN3-250ENST00000636839 GYPAP02724 150 aa16.82■□□□□ 0.28
CLN3-250ENST00000636839 SCTP09683 121 aa16.82■□□□□ 0.28
CLN3-250ENST00000636839 COL8A2P25067 703 aa16.82■□□□□ 0.28
CLN3-250ENST00000636839 RBM39Q14498 530 aaKnown RBP16.82■□□□□ 0.28
CLN3-250ENST00000636839 MEF2DQ14814 521 aa16.82■□□□□ 0.28
CLN3-250ENST00000636839 TATDN3Q17R31 274 aa16.82■□□□□ 0.28
CLN3-250ENST00000636839 DEDD2Q8WXF8 326 aa16.82■□□□□ 0.28
CLN3-250ENST00000636839 EHFQ9NZC4 300 aa16.82■□□□□ 0.28
CLN3-250ENST00000636839 ZNF222Q9UK12 451 aa16.82■□□□□ 0.28
CLN3-250ENST00000636839 LRRK2Q5S007 2527 aa16.82■□□□□ 0.28
CLN3-250ENST00000636839 AKAP6Q13023 2319 aa16.81■□□□□ 0.28
CLN3-250ENST00000636839 H2AFB2P0C5Z0 115 aa16.81■□□□□ 0.28
CLN3-250ENST00000636839 IRF2P14316 349 aa16.81■□□□□ 0.28
CLN3-250ENST00000636839 OR3A3P47888 321 aa16.81■□□□□ 0.28
CLN3-250ENST00000636839 BCAP31P51572 246 aa16.81■□□□□ 0.28
CLN3-250ENST00000636839 IGSF11Q5DX21 431 aa16.81■□□□□ 0.28
CLN3-250ENST00000636839 ZNF497Q6ZNH5 498 aa16.81■□□□□ 0.28
CLN3-250ENST00000636839 OVCH2Q7RTZ1 564 aa16.81■□□□□ 0.28
CLN3-250ENST00000636839 UBALD1Q8TB05 177 aa16.81■□□□□ 0.28
CLN3-250ENST00000636839 TMEM106BQ9NUM4 274 aa16.81■□□□□ 0.28
CLN3-250ENST00000636839 MAB21L2Q9Y586 359 aa16.81■□□□□ 0.28
CLN3-250ENST00000636839 TMEM178BH3BS89 294 aa16.8■□□□□ 0.28
CLN3-250ENST00000636839 ZNF737O75373 536 aa16.8■□□□□ 0.28
CLN3-250ENST00000636839 CLDN1O95832 211 aa16.8■□□□□ 0.28
CLN3-250ENST00000636839 IFNA6P05013 189 aa16.8■□□□□ 0.28
CLN3-250ENST00000636839 GLAP06280 429 aa16.8■□□□□ 0.28
CLN3-250ENST00000636839 ANXA7P20073 488 aaKnown RBP16.8■□□□□ 0.28
CLN3-250ENST00000636839 ARPC4P59998 168 aa16.8■□□□□ 0.28
CLN3-250ENST00000636839 VAX1Q5SQQ9 334 aa16.8■□□□□ 0.28
CLN3-250ENST00000636839 COQ2Q96H96 371 aa16.8■□□□□ 0.28
CLN3-250ENST00000636839 IGHV1-69-2A0A0G2JMI3 117 aa16.8■□□□□ 0.28
CLN3-250ENST00000636839 DISC1C4P0D8 188 aa16.8■□□□□ 0.28
CLN3-250ENST00000636839 IFNL4K9M1U5 179 aa16.8■□□□□ 0.28
CLN3-250ENST00000636839 AGAP6Q5VW22 663 aa16.8■□□□□ 0.28
CLN3-250ENST00000636839 FGFRL1Q8N441 504 aa16.8■□□□□ 0.28
CLN3-250ENST00000636839 CCL13Q99616 98 aa16.8■□□□□ 0.28
CLN3-250ENST00000636839 COPZ2Q9P299 210 aa16.8■□□□□ 0.28
CLN3-250ENST00000636839 EDARQ9UNE0 448 aa16.8■□□□□ 0.28
CLN3-250ENST00000636839 ALG5Q9Y673 324 aa16.8■□□□□ 0.28
CLN3-250ENST00000636839 CRYBG3Q68DQ2 2970 aa16.8■□□□□ 0.28
CLN3-250ENST00000636839 H3BUI4 141 aa16.79■□□□□ 0.28
CLN3-250ENST00000636839 TBPP20226 339 aa16.79■□□□□ 0.28
CLN3-250ENST00000636839 TAS2R46P59540 309 aa16.79■□□□□ 0.28
CLN3-250ENST00000636839 TSPAN5P62079 268 aa16.79■□□□□ 0.28
CLN3-250ENST00000636839 CDK10Q15131 360 aa16.79■□□□□ 0.28
CLN3-250ENST00000636839 RBMS2Q15434 407 aaKnown RBP16.79■□□□□ 0.28
CLN3-250ENST00000636839 KIAA2026Q5HYC2 2103 aa16.79■□□□□ 0.28
CLN3-250ENST00000636839 STUMQ69YW2 141 aa16.79■□□□□ 0.28
CLN3-250ENST00000636839 DCTN5Q9BTE1 182 aa16.79■□□□□ 0.28
CLN3-250ENST00000636839 ZNF286AQ9HBT8 521 aa16.79■□□□□ 0.28
CLN3-250ENST00000636839 IGKV1-6A0A0C4DH72 117 aa16.79■□□□□ 0.28
CLN3-250ENST00000636839 OOEPA6NGQ2 149 aa16.79■□□□□ 0.28
CLN3-250ENST00000636839 LRRC30A6NM36 301 aa16.79■□□□□ 0.28
CLN3-250ENST00000636839 RLN1P04808 185 aa16.79■□□□□ 0.28
CLN3-250ENST00000636839 GLIPR1P48060 266 aa16.79■□□□□ 0.28
CLN3-250ENST00000636839 PPOXP50336 477 aa16.79■□□□□ 0.28
CLN3-250ENST00000636839 NPY4RP50391 375 aa16.79■□□□□ 0.28
CLN3-250ENST00000636839 HERPUD1Q15011 391 aa16.79■□□□□ 0.28
CLN3-250ENST00000636839 GRK1Q15835 563 aa16.79■□□□□ 0.28
CLN3-250ENST00000636839 TRAF4Q9BUZ4 470 aaPredicted RBP16.79■□□□□ 0.28
CLN3-250ENST00000636839 KIF25Q9UIL4 384 aa16.79■□□□□ 0.28
CLN3-250ENST00000636839 SCP2D1Q9UJQ7 156 aa16.79■□□□□ 0.28
CLN3-250ENST00000636839 VSIG4Q9Y279 399 aa16.79■□□□□ 0.28
CLN3-250ENST00000636839 KLF2Q9Y5W3 355 aaPredicted RBP16.79■□□□□ 0.28
CLN3-250ENST00000636839 USF3Q68DE3 2245 aa16.78■□□□□ 0.28
CLN3-250ENST00000636839 RAI1Q7Z5J4 1906 aaPredicted RBP16.78■□□□□ 0.28
CLN3-250ENST00000636839 OR5H8P0DN80 308 aa16.78■□□□□ 0.28
CLN3-250ENST00000636839 CDKN1AP38936 164 aa16.78■□□□□ 0.28
CLN3-250ENST00000636839 CD300CQ08708 224 aa16.78■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 67.8 ms