RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 C9orf16Q9BUW7 83 aa9.52□□□□□ -0.88
UPF3B-204ENST00000619445 LINC00574Q9H8X3 128 aa9.52□□□□□ -0.88
UPF3B-204ENST00000619445 PAK1IP1Q9NWT1 392 aaPredicted RBP9.52□□□□□ -0.88
UPF3B-204ENST00000619445 MOB4Q9Y3A3 225 aa9.52□□□□□ -0.88
UPF3B-204ENST00000619445 RPL36Q9Y3U8 105 aaKnown RBP9.52□□□□□ -0.88
UPF3B-204ENST00000619445 HSPE1-MOB4S4R3N1 261 aa9.52□□□□□ -0.88
UPF3B-204ENST00000619445 E9PQ18 207 aa9.51□□□□□ -0.89
UPF3B-204ENST00000619445 ZFPL1O95159 310 aa9.51□□□□□ -0.89
UPF3B-204ENST00000619445 LPLP06858 475 aa9.51□□□□□ -0.89
UPF3B-204ENST00000619445 CALCBP10092 127 aa9.51□□□□□ -0.89
UPF3B-204ENST00000619445 RAB7AP51149 207 aa9.51□□□□□ -0.89
UPF3B-204ENST00000619445 ZP1P60852 638 aa9.51□□□□□ -0.89
UPF3B-204ENST00000619445 MADCAM1Q13477 382 aa9.51□□□□□ -0.89
UPF3B-204ENST00000619445 ATXN7L3Q14CW9 347 aaPredicted RBP9.51□□□□□ -0.89
UPF3B-204ENST00000619445 OR8H3Q8N146 312 aa9.51□□□□□ -0.89
UPF3B-204ENST00000619445 OR51D1Q8NGF3 324 aa9.51□□□□□ -0.89
UPF3B-204ENST00000619445 OR10AC1Q8NH08 325 aa9.51□□□□□ -0.89
UPF3B-204ENST00000619445 TSEN15Q8WW01 171 aaKnown RBP9.51□□□□□ -0.89
UPF3B-204ENST00000619445 TOMM40LQ969M1 308 aa9.51□□□□□ -0.89
UPF3B-204ENST00000619445 COQ2Q96H96 371 aa9.51□□□□□ -0.89
UPF3B-204ENST00000619445 KIRREL1Q96J84 757 aa9.51□□□□□ -0.89
UPF3B-204ENST00000619445 SPACA5Q96QH8 159 aa9.51□□□□□ -0.89
UPF3B-204ENST00000619445 GPER1Q99527 375 aa9.51□□□□□ -0.89
UPF3B-204ENST00000619445 ZNF286AQ9HBT8 521 aa9.51□□□□□ -0.89
UPF3B-204ENST00000619445 ZMAT5Q9UDW3 170 aaKnown RBP9.51□□□□□ -0.89
UPF3B-204ENST00000619445 MEIKINA0A087WXM9 373 aa9.5□□□□□ -0.89
UPF3B-204ENST00000619445 H0YJX3 145 aa9.5□□□□□ -0.89
UPF3B-204ENST00000619445 LY6LH3BQJ8 138 aa9.5□□□□□ -0.89
UPF3B-204ENST00000619445 FGF16O43320 207 aa9.5□□□□□ -0.89
UPF3B-204ENST00000619445 IL1AP01583 271 aa9.5□□□□□ -0.89
UPF3B-204ENST00000619445 NFYBP25208 207 aa9.5□□□□□ -0.89
UPF3B-204ENST00000619445 GLP1RP43220 463 aa9.5□□□□□ -0.89
UPF3B-204ENST00000619445 OR3A4PP47883 348 aa9.5□□□□□ -0.89
UPF3B-204ENST00000619445 DCTN2Q13561 401 aaKnown RBP9.5□□□□□ -0.89
UPF3B-204ENST00000619445 RBM39Q14498 530 aaKnown RBP9.5□□□□□ -0.89
UPF3B-204ENST00000619445 CDK5R1Q15078 307 aa9.5□□□□□ -0.89
UPF3B-204ENST00000619445 RSU1Q15404 277 aa9.5□□□□□ -0.89
UPF3B-204ENST00000619445 TMEM95Q3KNT9 176 aa9.5□□□□□ -0.89
UPF3B-204ENST00000619445 CCDC58Q4VC31 144 aa9.5□□□□□ -0.89
UPF3B-204ENST00000619445 Q6ZS46 218 aa9.5□□□□□ -0.89
UPF3B-204ENST00000619445 LINC00596Q86U02 117 aa9.5□□□□□ -0.89
UPF3B-204ENST00000619445 LHFPL3Q86UP9 236 aa9.5□□□□□ -0.89
UPF3B-204ENST00000619445 OSR2Q8N2R0 312 aa9.5□□□□□ -0.89
UPF3B-204ENST00000619445 CBR4Q8N4T8 237 aa9.5□□□□□ -0.89
UPF3B-204ENST00000619445 Q8NFD4 153 aa9.5□□□□□ -0.89
UPF3B-204ENST00000619445 RHOXF1Q8NHV9 184 aa9.5□□□□□ -0.89
UPF3B-204ENST00000619445 CNIH3Q8TBE1 160 aa9.5□□□□□ -0.89
UPF3B-204ENST00000619445 GPR148Q8TDV2 347 aa9.5□□□□□ -0.89
UPF3B-204ENST00000619445 CHPT1Q8WUD6 406 aa9.5□□□□□ -0.89
UPF3B-204ENST00000619445 DPF1Q92782 380 aa9.5□□□□□ -0.89
UPF3B-204ENST00000619445 MYDGFQ969H8 173 aa9.5□□□□□ -0.89
UPF3B-204ENST00000619445 JAM3Q9BX67 310 aa9.5□□□□□ -0.89
UPF3B-204ENST00000619445 RAB9BQ9NP90 201 aa9.5□□□□□ -0.89
UPF3B-204ENST00000619445 MRPS18AQ9NVS2 196 aaKnown RBP9.5□□□□□ -0.89
UPF3B-204ENST00000619445 AURKAIP1Q9NWT8 199 aaPredicted RBP9.5□□□□□ -0.89
UPF3B-204ENST00000619445 ERVK13-1Q9NX77 482 aa9.5□□□□□ -0.89
UPF3B-204ENST00000619445 CALYQ9NYX4 217 aa9.5□□□□□ -0.89
UPF3B-204ENST00000619445 A0A1W2PRX2 142 aa9.5□□□□□ -0.89
UPF3B-204ENST00000619445 IRGMA1A4Y4 181 aa9.5□□□□□ -0.89
UPF3B-204ENST00000619445 FAM90A18PA6NE21 464 aa9.5□□□□□ -0.89
UPF3B-204ENST00000619445 FAM90A16PA6NEW6 464 aa9.5□□□□□ -0.89
UPF3B-204ENST00000619445 FAM90A20PA6NIJ5 464 aa9.5□□□□□ -0.89
UPF3B-204ENST00000619445 FAM90A9PA6NNJ1 464 aa9.5□□□□□ -0.89
UPF3B-204ENST00000619445 FAM90A12PA8MX19 464 aa9.5□□□□□ -0.89
UPF3B-204ENST00000619445 FAM90A5PA8MXJ8 464 aa9.5□□□□□ -0.89
UPF3B-204ENST00000619445 J3QR06 171 aa9.5□□□□□ -0.89
UPF3B-204ENST00000619445 ZNF780AO75290 641 aaPredicted RBP9.5□□□□□ -0.89
UPF3B-204ENST00000619445 FAM90A15PP0C7V4 464 aa9.5□□□□□ -0.89
UPF3B-204ENST00000619445 FAM90A13PP0C7W8 464 aa9.5□□□□□ -0.89
UPF3B-204ENST00000619445 FAM90A14PP0C7W9 464 aa9.5□□□□□ -0.89
UPF3B-204ENST00000619445 FAM90A24PP0C7X0 464 aa9.5□□□□□ -0.89
UPF3B-204ENST00000619445 CGB3P0DN86 165 aa9.5□□□□□ -0.89
UPF3B-204ENST00000619445 CGB7P0DN87 165 aa9.5□□□□□ -0.89
UPF3B-204ENST00000619445 JUNBP17275 347 aaPredicted RBP9.5□□□□□ -0.89
UPF3B-204ENST00000619445 GABRB1P18505 474 aa9.5□□□□□ -0.89
UPF3B-204ENST00000619445 GZMHP20718 246 aa9.5□□□□□ -0.89
UPF3B-204ENST00000619445 SLC35B1P78383 322 aa9.5□□□□□ -0.89
UPF3B-204ENST00000619445 C17orf58Q2M2W7 97 aa9.5□□□□□ -0.89
UPF3B-204ENST00000619445 ZIK1Q3SY52 487 aaPredicted RBP9.5□□□□□ -0.89
UPF3B-204ENST00000619445 NHLRC3Q5JS37 347 aa9.5□□□□□ -0.89
UPF3B-204ENST00000619445 FOXB2Q5VYV0 432 aa9.5□□□□□ -0.89
UPF3B-204ENST00000619445 LPCAT4Q643R3 524 aa9.5□□□□□ -0.89
UPF3B-204ENST00000619445 ZNF529Q6P280 563 aa9.5□□□□□ -0.89
UPF3B-204ENST00000619445 CCDC121Q6ZUS5 278 aa9.5□□□□□ -0.89
UPF3B-204ENST00000619445 COMMD1Q8N668 190 aa9.5□□□□□ -0.89
UPF3B-204ENST00000619445 TNFAIP8L1Q8WVP5 186 aa9.5□□□□□ -0.89
UPF3B-204ENST00000619445 S100A13Q99584 98 aa9.5□□□□□ -0.89
UPF3B-204ENST00000619445 MCRIP2Q9BUT9 160 aaKnown RBP9.5□□□□□ -0.89
UPF3B-204ENST00000619445 IFT22Q9H7X7 185 aa9.5□□□□□ -0.89
UPF3B-204ENST00000619445 FAM118AQ9NWS6 357 aa9.5□□□□□ -0.89
UPF3B-204ENST00000619445 IDI2-AS1Q9NZ38 188 aa9.5□□□□□ -0.89
UPF3B-204ENST00000619445 IL36GQ9NZH8 169 aa9.5□□□□□ -0.89
UPF3B-204ENST00000619445 KIF25Q9UIL4 384 aa9.5□□□□□ -0.89
UPF3B-204ENST00000619445 PSMB11A5LHX3 300 aa9.49□□□□□ -0.89
UPF3B-204ENST00000619445 FAM172BPA6NC97 362 aa9.49□□□□□ -0.89
UPF3B-204ENST00000619445 NPIPB11E5RHQ5 1161 aa9.49□□□□□ -0.89
UPF3B-204ENST00000619445 PRB2P02812 416 aaPredicted RBP9.49□□□□□ -0.89
UPF3B-204ENST00000619445 CSTBP04080 98 aaKnown RBP9.49□□□□□ -0.89
UPF3B-204ENST00000619445 CD24P25063 80 aa9.49□□□□□ -0.89
UPF3B-204ENST00000619445 PPP3R1P63098 170 aa9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 63.1 ms