RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 LRRC10Q5BKY1 277 aa12.29□□□□□ -0.44
CPSF1-212ENST00000616140 SSX7Q7RTT5 188 aa12.29□□□□□ -0.44
CPSF1-212ENST00000616140 SLC25A38Q96DW6 304 aa12.29□□□□□ -0.44
CPSF1-212ENST00000616140 A0A1W2PNV4 684 aa12.29□□□□□ -0.44
CPSF1-212ENST00000616140 IL11P20809 199 aa12.29□□□□□ -0.44
CPSF1-212ENST00000616140 MAGEA5P43359 124 aa12.29□□□□□ -0.44
CPSF1-212ENST00000616140 GALR1P47211 349 aa12.29□□□□□ -0.44
CPSF1-212ENST00000616140 PAX5Q02548 391 aa12.29□□□□□ -0.44
CPSF1-212ENST00000616140 ZNF154Q13106 437 aa12.29□□□□□ -0.44
CPSF1-212ENST00000616140 GFRALQ6UXV0 394 aa12.29□□□□□ -0.44
CPSF1-212ENST00000616140 SLC16A13Q7RTY0 426 aa12.29□□□□□ -0.44
CPSF1-212ENST00000616140 TMEM56Q96MV1 263 aa12.29□□□□□ -0.44
CPSF1-212ENST00000616140 OR2H1Q9GZK4 316 aa12.29□□□□□ -0.44
CPSF1-212ENST00000616140 NAT8BQ9UHF3 227 aa12.29□□□□□ -0.44
CPSF1-212ENST00000616140 TNFSF18Q9UNG2 199 aa12.29□□□□□ -0.44
CPSF1-212ENST00000616140 PATE3B3GLJ2 98 aa12.28□□□□□ -0.44
CPSF1-212ENST00000616140 ST8SIA5O15466 376 aa12.28□□□□□ -0.44
CPSF1-212ENST00000616140 CD1AP06126 327 aa12.28□□□□□ -0.44
CPSF1-212ENST00000616140 NMBP08949 121 aa12.28□□□□□ -0.44
CPSF1-212ENST00000616140 RAB5AP20339 215 aa12.28□□□□□ -0.44
CPSF1-212ENST00000616140 SUMO1P63165 101 aaKnown RBP12.28□□□□□ -0.44
CPSF1-212ENST00000616140 CHRDL1Q9BU40 450 aa12.28□□□□□ -0.44
CPSF1-212ENST00000616140 NKX2-6A6NCS4 301 aa12.28□□□□□ -0.44
CPSF1-212ENST00000616140 CDS2O95674 445 aa12.28□□□□□ -0.44
CPSF1-212ENST00000616140 FBP1P09467 338 aa12.28□□□□□ -0.44
CPSF1-212ENST00000616140 PMCHP20382 165 aa12.28□□□□□ -0.44
CPSF1-212ENST00000616140 MPV17LQ2QL34 196 aa12.28□□□□□ -0.44
CPSF1-212ENST00000616140 CCL17Q92583 94 aa12.28□□□□□ -0.44
CPSF1-212ENST00000616140 PTX4Q96A99 478 aa12.28□□□□□ -0.44
CPSF1-212ENST00000616140 ZNF501Q96CX3 271 aaPredicted RBP12.28□□□□□ -0.44
CPSF1-212ENST00000616140 ARL2-SNX15V9GYD0 113 aa12.28□□□□□ -0.44
CPSF1-212ENST00000616140 COL11A2P13942 1736 aaPredicted RBP12.28□□□□□ -0.44
CPSF1-212ENST00000616140 PIN1P1O15428 100 aa12.28□□□□□ -0.44
CPSF1-212ENST00000616140 LIFP15018 202 aa12.28□□□□□ -0.44
CPSF1-212ENST00000616140 F2RP25116 425 aa12.28□□□□□ -0.44
CPSF1-212ENST00000616140 FCER1GP30273 86 aa12.28□□□□□ -0.44
CPSF1-212ENST00000616140 OPRK1P41145 380 aa12.28□□□□□ -0.44
CPSF1-212ENST00000616140 HIST1H3AP68431 136 aa12.28□□□□□ -0.44
CPSF1-212ENST00000616140 MOGAT2Q3SYC2 334 aa12.28□□□□□ -0.44
CPSF1-212ENST00000616140 TOMM20LQ6UXN7 152 aa12.28□□□□□ -0.44
CPSF1-212ENST00000616140 GPR35Q9HC97 309 aa12.28□□□□□ -0.44
CPSF1-212ENST00000616140 SLC7A10Q9NS82 523 aa12.28□□□□□ -0.44
CPSF1-212ENST00000616140 TMEM38BQ9NVV0 291 aa12.28□□□□□ -0.44
CPSF1-212ENST00000616140 COL11A1P12107 1806 aaPredicted RBP12.28□□□□□ -0.44
CPSF1-212ENST00000616140 SEC14L6B5MCN3 397 aa12.27□□□□□ -0.44
CPSF1-212ENST00000616140 NGFRP08138 427 aa12.27□□□□□ -0.44
CPSF1-212ENST00000616140 PLPPR5Q32ZL2 321 aa12.27□□□□□ -0.44
CPSF1-212ENST00000616140 BSXQ3C1V8 233 aa12.27□□□□□ -0.44
CPSF1-212ENST00000616140 HOGA1Q86XE5 327 aa12.27□□□□□ -0.44
CPSF1-212ENST00000616140 MRGPRFQ96AM1 343 aa12.27□□□□□ -0.44
CPSF1-212ENST00000616140 GPX7Q96SL4 187 aaPredicted RBP12.27□□□□□ -0.44
CPSF1-212ENST00000616140 NDFIP1Q9BT67 221 aa12.27□□□□□ -0.44
CPSF1-212ENST00000616140 TMEM147Q9BVK8 224 aa12.27□□□□□ -0.44
CPSF1-212ENST00000616140 A0A0J9YW62 118 aa12.27□□□□□ -0.45
CPSF1-212ENST00000616140 UPK3AO75631 287 aa12.27□□□□□ -0.45
CPSF1-212ENST00000616140 BTNL3Q6UXE8 466 aa12.27□□□□□ -0.45
CPSF1-212ENST00000616140 NEIL1Q96FI4 390 aaPredicted RBP12.27□□□□□ -0.45
CPSF1-212ENST00000616140 SEC11CQ9BY50 192 aa12.27□□□□□ -0.45
CPSF1-212ENST00000616140 HLA-GP17693 338 aa12.27□□□□□ -0.45
CPSF1-212ENST00000616140 HES3Q5TGS1 186 aa12.27□□□□□ -0.45
CPSF1-212ENST00000616140 CFHR5Q9BXR6 569 aa12.27□□□□□ -0.45
CPSF1-212ENST00000616140 TDRD15B5MCY1 1934 aaKnown RBP12.27□□□□□ -0.45
CPSF1-212ENST00000616140 ERVH48-1M5A8F1 160 aa12.27□□□□□ -0.45
CPSF1-212ENST00000616140 CFDP00746 253 aaPredicted RBP12.27□□□□□ -0.45
CPSF1-212ENST00000616140 BCL3P20749 454 aa12.27□□□□□ -0.45
CPSF1-212ENST00000616140 CRYBA2P53672 197 aa12.27□□□□□ -0.45
CPSF1-212ENST00000616140 KLF3P57682 345 aaPredicted RBP12.27□□□□□ -0.45
CPSF1-212ENST00000616140 TPPP2P59282 170 aa12.27□□□□□ -0.45
CPSF1-212ENST00000616140 EWSR1Q01844 656 aaKnown RBP eCLIP12.27□□□□□ -0.454e-12■■■□□ 17.6
CPSF1-212ENST00000616140 C19orf57Q0VDD7 668 aa12.27□□□□□ -0.45
CPSF1-212ENST00000616140 COL13A1Q5TAT6 717 aaPredicted RBP12.27□□□□□ -0.45
CPSF1-212ENST00000616140 TMEM211Q6ICI0 200 aa12.27□□□□□ -0.45
CPSF1-212ENST00000616140 NOTCH3Q9UM47 2321 aa12.26□□□□□ -0.45
CPSF1-212ENST00000616140 TRBV5-5A0A0J9YX44 114 aa12.26□□□□□ -0.45
CPSF1-212ENST00000616140 LY86O95711 162 aa12.26□□□□□ -0.45
CPSF1-212ENST00000616140 SOX8P57073 446 aa12.26□□□□□ -0.45
CPSF1-212ENST00000616140 IFITM2Q01629 132 aa12.26□□□□□ -0.45
CPSF1-212ENST00000616140 ROM1Q03395 351 aa12.26□□□□□ -0.45
CPSF1-212ENST00000616140 NCMAPQ5T1S8 102 aa12.26□□□□□ -0.45
CPSF1-212ENST00000616140 DEFB124Q8NES8 71 aa12.26□□□□□ -0.45
CPSF1-212ENST00000616140 MOB3AQ96BX8 217 aa12.26□□□□□ -0.45
CPSF1-212ENST00000616140 OR1A1Q9P1Q5 309 aa12.26□□□□□ -0.45
CPSF1-212ENST00000616140 XKRY2A2RUG3 117 aa12.26□□□□□ -0.45
CPSF1-212ENST00000616140 CTSBP07858 339 aa12.26□□□□□ -0.45
CPSF1-212ENST00000616140 RHOBP62745 196 aa12.26□□□□□ -0.45
CPSF1-212ENST00000616140 GNB2P62879 340 aa12.26□□□□□ -0.45
CPSF1-212ENST00000616140 OR5I1Q13606 314 aa12.26□□□□□ -0.45
CPSF1-212ENST00000616140 ZNF345Q14585 488 aa12.26□□□□□ -0.45
CPSF1-212ENST00000616140 OR2T6Q8NHC8 308 aa12.26□□□□□ -0.45
CPSF1-212ENST00000616140 J3QT63 122 aa12.26□□□□□ -0.45
CPSF1-212ENST00000616140 TSPAN2O60636 221 aa12.26□□□□□ -0.45
CPSF1-212ENST00000616140 MEOX2P50222 304 aa12.26□□□□□ -0.45
CPSF1-212ENST00000616140 TNFAIP6P98066 277 aaPredicted RBP12.26□□□□□ -0.45
CPSF1-212ENST00000616140 CLPPQ16740 277 aaPredicted RBP12.26□□□□□ -0.45
CPSF1-212ENST00000616140 ATP5SQ99766 215 aa12.26□□□□□ -0.45
CPSF1-212ENST00000616140 SLC45A2Q9UMX9 530 aa12.26□□□□□ -0.45
CPSF1-212ENST00000616140 TIMM9Q9Y5J7 89 aa12.26□□□□□ -0.45
CPSF1-212ENST00000616140 LOC102723971A0A1B0GUV8 181 aa12.25□□□□□ -0.45
CPSF1-212ENST00000616140 KIAA1324LA8MWY0 1029 aaPredicted RBP12.25□□□□□ -0.45
CPSF1-212ENST00000616140 AP4M1O00189 453 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms