RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 ACOT13Q9NPJ3 140 aa15.82■□□□□ 0.12
UPF1-212ENST00000601689 ING3Q9NXR8 418 aa15.82■□□□□ 0.12
UPF1-212ENST00000601689 SOX21Q9Y651 276 aaPredicted RBP15.82■□□□□ 0.12
UPF1-212ENST00000601689 SESN1Q9Y6P5 492 aa15.82■□□□□ 0.12
UPF1-212ENST00000601689 ODAMA1E959 279 aa15.81■□□□□ 0.12
UPF1-212ENST00000601689 TMEM89A2RUT3 159 aa15.81■□□□□ 0.12
UPF1-212ENST00000601689 PIN1P1O15428 100 aa15.81■□□□□ 0.12
UPF1-212ENST00000601689 CLPXO76031 633 aa15.81■□□□□ 0.12
UPF1-212ENST00000601689 ARG1P05089 322 aa15.81■□□□□ 0.12
UPF1-212ENST00000601689 GABRA5P31644 462 aa15.81■□□□□ 0.12
UPF1-212ENST00000601689 MAP2K4P45985 399 aa15.81■□□□□ 0.12
UPF1-212ENST00000601689 PSMD7P51665 324 aa15.81■□□□□ 0.12
UPF1-212ENST00000601689 DLX1P56177 255 aa15.81■□□□□ 0.12
UPF1-212ENST00000601689 RPL15P61313 204 aaKnown RBP15.81■□□□□ 0.12
UPF1-212ENST00000601689 PRB3Q04118 309 aaPredicted RBP15.81■□□□□ 0.12
UPF1-212ENST00000601689 DYNC1I2Q13409 638 aaKnown RBP15.81■□□□□ 0.12
UPF1-212ENST00000601689 RBM39Q14498 530 aaKnown RBP15.81■□□□□ 0.12
UPF1-212ENST00000601689 OR5R1Q8NH85 324 aa15.81■□□□□ 0.12
UPF1-212ENST00000601689 FCGR1BQ92637 280 aa15.81■□□□□ 0.12
UPF1-212ENST00000601689 CORO2AQ92828 525 aa15.81■□□□□ 0.12
UPF1-212ENST00000601689 IFT22Q9H7X7 185 aa15.81■□□□□ 0.12
UPF1-212ENST00000601689 TBL2Q9Y4P3 447 aaKnown RBP15.81■□□□□ 0.12
UPF1-212ENST00000601689 LRRC42Q9Y546 428 aa15.81■□□□□ 0.12
UPF1-212ENST00000601689 MEIKINA0A087WXM9 373 aa15.8■□□□□ 0.12
UPF1-212ENST00000601689 MAGEA13PA6NCF6 341 aa15.8■□□□□ 0.12
UPF1-212ENST00000601689 ZNF729A6NN14 1252 aaPredicted RBP15.8■□□□□ 0.12
UPF1-212ENST00000601689 HKR1P10072 659 aa15.8■□□□□ 0.12
UPF1-212ENST00000601689 GLIPR1P48060 266 aa15.8■□□□□ 0.12
UPF1-212ENST00000601689 GDPGP1Q6ZNW5 385 aa15.8■□□□□ 0.12
UPF1-212ENST00000601689 C11orf42Q8N5U0 333 aa15.8■□□□□ 0.12
UPF1-212ENST00000601689 DYRK2Q92630 601 aa15.8■□□□□ 0.12
UPF1-212ENST00000601689 NKX3-1Q99801 234 aaPredicted RBP15.8■□□□□ 0.12
UPF1-212ENST00000601689 DPCDQ9BVM2 203 aaPredicted RBP15.8■□□□□ 0.12
UPF1-212ENST00000601689 NCOR1P1Q9H4R4 102 aa15.8■□□□□ 0.12
UPF1-212ENST00000601689 ZNRD1Q9P1U0 126 aa15.8■□□□□ 0.12
UPF1-212ENST00000601689 MEX3AA1L020 520 aaKnown RBP15.79■□□□□ 0.12
UPF1-212ENST00000601689 MCRIP1C9JLW8 97 aa15.79■□□□□ 0.12
UPF1-212ENST00000601689 GEMIN2O14893 280 aaKnown RBP15.79■□□□□ 0.12
UPF1-212ENST00000601689 CRTAPO75718 401 aaPredicted RBP15.79■□□□□ 0.12
UPF1-212ENST00000601689 UCHL1P09936 223 aa15.79■□□□□ 0.12
UPF1-212ENST00000601689 IER3P46695 156 aa15.79■□□□□ 0.12
UPF1-212ENST00000601689 DLX6P56179 175 aa15.79■□□□□ 0.12
UPF1-212ENST00000601689 RTN4RL2Q86UN3 420 aa15.79■□□□□ 0.12
UPF1-212ENST00000601689 C3orf56Q8N813 242 aa15.79■□□□□ 0.12
UPF1-212ENST00000601689 SUMF2Q8NBJ7 301 aa15.79■□□□□ 0.12
UPF1-212ENST00000601689 BEND2Q8NDZ0 799 aa15.79■□□□□ 0.12
UPF1-212ENST00000601689 ZNF596Q8TC21 504 aa15.79■□□□□ 0.12
UPF1-212ENST00000601689 C1orf147Q96MC9 270 aaPredicted RBP15.79■□□□□ 0.12
UPF1-212ENST00000601689 CLEC7AQ9BXN2 247 aa15.79■□□□□ 0.12
UPF1-212ENST00000601689 RAB9BQ9NP90 201 aa15.79■□□□□ 0.12
UPF1-212ENST00000601689 TRAV24A0A0B4J272 114 aa15.78■□□□□ 0.12
UPF1-212ENST00000601689 FAM90A10PA6NDY2 464 aa15.78■□□□□ 0.12
UPF1-212ENST00000601689 FAM90A18PA6NE21 464 aa15.78■□□□□ 0.12
UPF1-212ENST00000601689 FAM90A16PA6NEW6 464 aa15.78■□□□□ 0.12
UPF1-212ENST00000601689 FAM90A20PA6NIJ5 464 aa15.78■□□□□ 0.12
UPF1-212ENST00000601689 FAM90A8PA6NJQ4 464 aa15.78■□□□□ 0.12
UPF1-212ENST00000601689 FAM90A7PA6NKC0 464 aa15.78■□□□□ 0.12
UPF1-212ENST00000601689 FAM90A22PA8MWA6 464 aa15.78■□□□□ 0.12
UPF1-212ENST00000601689 FAM90A12PA8MX19 464 aa15.78■□□□□ 0.12
UPF1-212ENST00000601689 FAM90A5PA8MXJ8 464 aa15.78■□□□□ 0.12
UPF1-212ENST00000601689 FAM90A23PA8MXZ1 464 aa15.78■□□□□ 0.12
UPF1-212ENST00000601689 SC5DO75845 299 aa15.78■□□□□ 0.12
UPF1-212ENST00000601689 FAM90A15PP0C7V4 464 aa15.78■□□□□ 0.12
UPF1-212ENST00000601689 FAM90A13PP0C7W8 464 aa15.78■□□□□ 0.12
UPF1-212ENST00000601689 FAM90A14PP0C7W9 464 aa15.78■□□□□ 0.12
UPF1-212ENST00000601689 FAM90A24PP0C7X0 464 aa15.78■□□□□ 0.12
UPF1-212ENST00000601689 GLP1RP43220 463 aa15.78■□□□□ 0.12
UPF1-212ENST00000601689 ARHGDIBP52566 201 aa15.78■□□□□ 0.12
UPF1-212ENST00000601689 RPS25P62851 125 aaKnown RBP15.78■□□□□ 0.12
UPF1-212ENST00000601689 EMX1Q04741 257 aaPredicted RBP15.78■□□□□ 0.12
UPF1-212ENST00000601689 INSL4Q14641 139 aa15.78■□□□□ 0.12
UPF1-212ENST00000601689 TAF9Q16594 264 aa15.78■□□□□ 0.12
UPF1-212ENST00000601689 HEPN1Q6WQI6 88 aa15.78■□□□□ 0.12
UPF1-212ENST00000601689 OR11H6Q8NGC7 330 aa15.78■□□□□ 0.12
UPF1-212ENST00000601689 CREB3L1Q96BA8 519 aa15.78■□□□□ 0.12
UPF1-212ENST00000601689 MALSU1Q96EH3 234 aa15.78■□□□□ 0.12
UPF1-212ENST00000601689 SELENOIQ9C0D9 397 aa15.78■□□□□ 0.12
UPF1-212ENST00000601689 TMEM133Q9H2Q1 129 aa15.78■□□□□ 0.12
UPF1-212ENST00000601689 PLGRKTQ9HBL7 147 aa15.78■□□□□ 0.12
UPF1-212ENST00000601689 ABCB10Q9NRK6 738 aa15.78■□□□□ 0.12
UPF1-212ENST00000601689 HAX1O00165 279 aa15.77■□□□□ 0.12
UPF1-212ENST00000601689 TOR1AO14656 332 aa15.77■□□□□ 0.12
UPF1-212ENST00000601689 MGMTP16455 207 aa15.77■□□□□ 0.12
UPF1-212ENST00000601689 GZMHP20718 246 aa15.77■□□□□ 0.12
UPF1-212ENST00000601689 CDK2P24941 298 aa15.77■□□□□ 0.12
UPF1-212ENST00000601689 CALRP27797 417 aaKnown RBP15.77■□□□□ 0.12
UPF1-212ENST00000601689 HTR2CP28335 458 aa15.77■□□□□ 0.12
UPF1-212ENST00000601689 COMPP49747 757 aaPredicted RBP15.77■□□□□ 0.12
UPF1-212ENST00000601689 PRRX1P54821 245 aa15.77■□□□□ 0.12
UPF1-212ENST00000601689 AANATQ16613 207 aa15.77■□□□□ 0.12
UPF1-212ENST00000601689 FAM27D1Q5T7N8 215 aa15.77■□□□□ 0.12
UPF1-212ENST00000601689 SLC35E4Q6ICL7 350 aa15.77■□□□□ 0.12
UPF1-212ENST00000601689 HCP5Q6MZN7 132 aa15.77■□□□□ 0.12
UPF1-212ENST00000601689 COQ2Q96H96 371 aa15.77■□□□□ 0.12
UPF1-212ENST00000601689 SSX3Q99909 188 aa15.77■□□□□ 0.12
UPF1-212ENST00000601689 CHIAQ9BZP6 476 aa15.77■□□□□ 0.12
UPF1-212ENST00000601689 MEGF9Q9H1U4 602 aa15.77■□□□□ 0.12
UPF1-212ENST00000601689 A0A1B0GUS0 222 aa15.76■□□□□ 0.11
UPF1-212ENST00000601689 TMEM30CPA0ZSE6 113 aa15.76■□□□□ 0.11
UPF1-212ENST00000601689 FAM181BA6NEQ2 426 aa15.76■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms