RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 GABRA5P31644 462 aa13.74□□□□□ -0.21
TRIM28-215ENST00000601150 MPV17LQ2QL34 196 aa13.74□□□□□ -0.21
TRIM28-215ENST00000601150 TMEM91Q6ZNR0 172 aa13.74□□□□□ -0.21
TRIM28-215ENST00000601150 OR13D1Q8NGV5 346 aa13.74□□□□□ -0.21
TRIM28-215ENST00000601150 CORO2AQ92828 525 aa13.74□□□□□ -0.21
TRIM28-215ENST00000601150 GCDHQ92947 438 aaPredicted RBP13.74□□□□□ -0.21
TRIM28-215ENST00000601150 PPIL3Q9H2H8 161 aaKnown RBP13.74□□□□□ -0.21
TRIM28-215ENST00000601150 GAL3ST2Q9H3Q3 398 aa13.74□□□□□ -0.21
TRIM28-215ENST00000601150 ING3Q9NXR8 418 aa13.74□□□□□ -0.21
TRIM28-215ENST00000601150 TAS2R3Q9NYW6 316 aa13.74□□□□□ -0.21
TRIM28-215ENST00000601150 LRRC42Q9Y546 428 aa13.74□□□□□ -0.21
TRIM28-215ENST00000601150 POMT1Q9Y6A1 747 aa13.74□□□□□ -0.21
TRIM28-215ENST00000601150 GEMIN2O14893 280 aaKnown RBP13.73□□□□□ -0.21
TRIM28-215ENST00000601150 ARL6IP5O75915 188 aa13.73□□□□□ -0.21
TRIM28-215ENST00000601150 CLPXO76031 633 aa13.73□□□□□ -0.21
TRIM28-215ENST00000601150 KCNJ3P48549 501 aa13.73□□□□□ -0.21
TRIM28-215ENST00000601150 GLT8D1Q68CQ7 371 aa13.73□□□□□ -0.21
TRIM28-215ENST00000601150 C16orf87Q6PH81 154 aa13.73□□□□□ -0.21
TRIM28-215ENST00000601150 SPARTQ8N0X7 666 aa13.73□□□□□ -0.21
TRIM28-215ENST00000601150 SUMF2Q8NBJ7 301 aa13.73□□□□□ -0.21
TRIM28-215ENST00000601150 DPCDQ9BVM2 203 aaPredicted RBP13.73□□□□□ -0.21
TRIM28-215ENST00000601150 BARHL1Q9BZE3 327 aa13.73□□□□□ -0.21
TRIM28-215ENST00000601150 DPAGT1Q9H3H5 408 aa13.73□□□□□ -0.21
TRIM28-215ENST00000601150 NCOR1P1Q9H4R4 102 aa13.73□□□□□ -0.21
TRIM28-215ENST00000601150 TNFRSF19Q9NS68 423 aa13.73□□□□□ -0.21
TRIM28-215ENST00000601150 OR6C3Q9NZP0 311 aa13.73□□□□□ -0.21
TRIM28-215ENST00000601150 ZNRD1Q9P1U0 126 aa13.73□□□□□ -0.21
TRIM28-215ENST00000601150 GHRLQ9UBU3 117 aa13.73□□□□□ -0.21
TRIM28-215ENST00000601150 SESN1Q9Y6P5 492 aa13.73□□□□□ -0.21
TRIM28-215ENST00000601150 TMEM89A2RUT3 159 aa13.72□□□□□ -0.21
TRIM28-215ENST00000601150 IGHV4-59P01825 116 aa13.72□□□□□ -0.21
TRIM28-215ENST00000601150 IER3P46695 156 aa13.72□□□□□ -0.21
TRIM28-215ENST00000601150 LGALS4P56470 323 aa13.72□□□□□ -0.21
TRIM28-215ENST00000601150 FABP5Q01469 135 aa13.72□□□□□ -0.21
TRIM28-215ENST00000601150 PAX5Q02548 391 aa13.72□□□□□ -0.21
TRIM28-215ENST00000601150 SSX1Q16384 188 aa13.72□□□□□ -0.21
TRIM28-215ENST00000601150 TAF9Q16594 264 aa13.72□□□□□ -0.21
TRIM28-215ENST00000601150 C1orf100Q5SVJ3 147 aa13.72□□□□□ -0.21
TRIM28-215ENST00000601150 OR11H6Q8NGC7 330 aa13.72□□□□□ -0.21
TRIM28-215ENST00000601150 ZNF581Q9P0T4 197 aa13.72□□□□□ -0.21
TRIM28-215ENST00000601150 KIF25Q9UIL4 384 aa13.72□□□□□ -0.21
TRIM28-215ENST00000601150 MEIKINA0A087WXM9 373 aa13.71□□□□□ -0.21
TRIM28-215ENST00000601150 CRTAPO75718 401 aaPredicted RBP13.71□□□□□ -0.21
TRIM28-215ENST00000601150 UBBP0CG47 229 aa13.71□□□□□ -0.21
TRIM28-215ENST00000601150 HKR1P10072 659 aa13.71□□□□□ -0.21
TRIM28-215ENST00000601150 MGMTP16455 207 aa13.71□□□□□ -0.21
TRIM28-215ENST00000601150 ATAD3CQ5T2N8 411 aa13.71□□□□□ -0.21
TRIM28-215ENST00000601150 UBE2UQ5VVX9 321 aa13.71□□□□□ -0.21
TRIM28-215ENST00000601150 RSBN1Q5VWQ0 802 aaPredicted RBP13.71□□□□□ -0.21
TRIM28-215ENST00000601150 ZNF773Q6PK81 442 aa13.71□□□□□ -0.21
TRIM28-215ENST00000601150 BEND2Q8NDZ0 799 aa13.71□□□□□ -0.21
TRIM28-215ENST00000601150 TMEM104Q8NE00 496 aa13.71□□□□□ -0.21
TRIM28-215ENST00000601150 PLPPR1Q8TBJ4 325 aa13.71□□□□□ -0.21
TRIM28-215ENST00000601150 FCGR1BQ92637 280 aa13.71□□□□□ -0.21
TRIM28-215ENST00000601150 CHIAQ9BZP6 476 aa13.71□□□□□ -0.21
TRIM28-215ENST00000601150 TMEM133Q9H2Q1 129 aa13.71□□□□□ -0.21
TRIM28-215ENST00000601150 BANF2Q9H503 90 aa13.71□□□□□ -0.21
TRIM28-215ENST00000601150 SPACA1Q9HBV2 294 aa13.71□□□□□ -0.21
TRIM28-215ENST00000601150 NDUFB11Q9NX14 153 aa13.71□□□□□ -0.21
TRIM28-215ENST00000601150 STAB1Q9NY15 2570 aa13.7□□□□□ -0.22
TRIM28-215ENST00000601150 FAM90A10PA6NDY2 464 aa13.7□□□□□ -0.22
TRIM28-215ENST00000601150 FAM90A18PA6NE21 464 aa13.7□□□□□ -0.22
TRIM28-215ENST00000601150 FAM90A16PA6NEW6 464 aa13.7□□□□□ -0.22
TRIM28-215ENST00000601150 FAM90A20PA6NIJ5 464 aa13.7□□□□□ -0.22
TRIM28-215ENST00000601150 FAM90A8PA6NJQ4 464 aa13.7□□□□□ -0.22
TRIM28-215ENST00000601150 FAM90A7PA6NKC0 464 aa13.7□□□□□ -0.22
TRIM28-215ENST00000601150 ZNF729A6NN14 1252 aaPredicted RBP13.7□□□□□ -0.22
TRIM28-215ENST00000601150 FAM90A22PA8MWA6 464 aa13.7□□□□□ -0.22
TRIM28-215ENST00000601150 FAM90A12PA8MX19 464 aa13.7□□□□□ -0.22
TRIM28-215ENST00000601150 FAM90A5PA8MXJ8 464 aa13.7□□□□□ -0.22
TRIM28-215ENST00000601150 FAM90A23PA8MXZ1 464 aa13.7□□□□□ -0.22
TRIM28-215ENST00000601150 ODF3BA8MYP8 253 aa13.7□□□□□ -0.22
TRIM28-215ENST00000601150 ARG1P05089 322 aa13.7□□□□□ -0.22
TRIM28-215ENST00000601150 FAM90A15PP0C7V4 464 aa13.7□□□□□ -0.22
TRIM28-215ENST00000601150 FAM90A13PP0C7W8 464 aa13.7□□□□□ -0.22
TRIM28-215ENST00000601150 FAM90A14PP0C7W9 464 aa13.7□□□□□ -0.22
TRIM28-215ENST00000601150 FAM90A24PP0C7X0 464 aa13.7□□□□□ -0.22
TRIM28-215ENST00000601150 CD37P11049 281 aa13.7□□□□□ -0.22
TRIM28-215ENST00000601150 CDK2P24941 298 aa13.7□□□□□ -0.22
TRIM28-215ENST00000601150 CALRP27797 417 aaKnown RBP13.7□□□□□ -0.22
TRIM28-215ENST00000601150 DYNC1I2Q13409 638 aaKnown RBP13.7□□□□□ -0.22
TRIM28-215ENST00000601150 PRAMEF5Q5TYX0 476 aa13.7□□□□□ -0.22
TRIM28-215ENST00000601150 ZNF626Q68DY1 528 aa13.7□□□□□ -0.22
TRIM28-215ENST00000601150 SLC35E4Q6ICL7 350 aa13.7□□□□□ -0.22
TRIM28-215ENST00000601150 OR52W1Q6IF63 320 aa13.7□□□□□ -0.22
TRIM28-215ENST00000601150 HEPN1Q6WQI6 88 aa13.7□□□□□ -0.22
TRIM28-215ENST00000601150 C12orf54Q6X4T0 127 aa13.7□□□□□ -0.22
TRIM28-215ENST00000601150 ZNF565Q8N9K5 539 aa13.7□□□□□ -0.22
TRIM28-215ENST00000601150 C17orf50Q8WW18 174 aa13.7□□□□□ -0.22
TRIM28-215ENST00000601150 AJUBAQ96IF1 538 aa13.7□□□□□ -0.22
TRIM28-215ENST00000601150 SELENOIQ9C0D9 397 aa13.7□□□□□ -0.22
TRIM28-215ENST00000601150 CST11Q9H112 138 aa13.7□□□□□ -0.22
TRIM28-215ENST00000601150 TBL2Q9Y4P3 447 aaKnown RBP13.7□□□□□ -0.22
TRIM28-215ENST00000601150 IGHV2-26A0A0B4J1V2 119 aa13.69□□□□□ -0.22
TRIM28-215ENST00000601150 BTBD17A6NE02 478 aa13.69□□□□□ -0.22
TRIM28-215ENST00000601150 MMP23AO75900 390 aa13.69□□□□□ -0.22
TRIM28-215ENST00000601150 PSMB9P28065 219 aa13.69□□□□□ -0.22
TRIM28-215ENST00000601150 HTR2CP28335 458 aa13.69□□□□□ -0.22
TRIM28-215ENST00000601150 GLP1RP43220 463 aa13.69□□□□□ -0.22
TRIM28-215ENST00000601150 COMPP49747 757 aaPredicted RBP13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms