RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 GDNFP39905 211 aa7.84□□□□□ -1.15
VRK3-216ENST00000599342 CDK5R1Q15078 307 aa7.84□□□□□ -1.15
VRK3-216ENST00000599342 RSU1Q15404 277 aa7.84□□□□□ -1.15
VRK3-216ENST00000599342 ZSCAN26Q16670 478 aa7.84□□□□□ -1.15
VRK3-216ENST00000599342 OXLD1Q5BKU9 147 aa7.84□□□□□ -1.15
VRK3-216ENST00000599342 KHDC1LQ5JSQ8 128 aa7.84□□□□□ -1.15
VRK3-216ENST00000599342 TPTE2P1Q5T6R2 138 aa7.84□□□□□ -1.15
VRK3-216ENST00000599342 RNF144BQ7Z419 303 aa7.84□□□□□ -1.15
VRK3-216ENST00000599342 SATL1Q86VE3 508 aa7.84□□□□□ -1.15
VRK3-216ENST00000599342 PXT1Q8NFP0 134 aa7.84□□□□□ -1.15
VRK3-216ENST00000599342 OR51T1Q8NGJ9 327 aa7.84□□□□□ -1.15
VRK3-216ENST00000599342 OR52I1Q8NGK6 324 aa7.84□□□□□ -1.15
VRK3-216ENST00000599342 OR9G1Q8NH87 305 aa7.84□□□□□ -1.15
VRK3-216ENST00000599342 MRAPQ8TCY5 172 aa7.84□□□□□ -1.15
VRK3-216ENST00000599342 TNFAIP8L1Q8WVP5 186 aa7.84□□□□□ -1.15
VRK3-216ENST00000599342 TOMM40LQ969M1 308 aa7.84□□□□□ -1.15
VRK3-216ENST00000599342 RPEQ96AT9 228 aa7.84□□□□□ -1.15
VRK3-216ENST00000599342 RBM14Q96PK6 669 aaKnown RBP7.84□□□□□ -1.15
VRK3-216ENST00000599342 OCSTAMPQ9BR26 566 aa7.84□□□□□ -1.15
VRK3-216ENST00000599342 BARHL1Q9BZE3 327 aa7.84□□□□□ -1.15
VRK3-216ENST00000599342 PPIL3Q9H2H8 161 aaKnown RBP7.84□□□□□ -1.15
VRK3-216ENST00000599342 PCDHB16Q9NRJ7 776 aa7.84□□□□□ -1.15
VRK3-216ENST00000599342 NECAP2Q9NVZ3 263 aa7.84□□□□□ -1.15
VRK3-216ENST00000599342 PRKDCP78527 4128 aaKnown RBP7.84□□□□□ -1.16
VRK3-216ENST00000599342 VWFP04275 2813 aa7.83□□□□□ -1.16
VRK3-216ENST00000599342 KBTBD11-OT1A0A1B0GTJ5 212 aa7.83□□□□□ -1.16
VRK3-216ENST00000599342 TCRBV4S1A1TA0A5B7 111 aa7.83□□□□□ -1.16
VRK3-216ENST00000599342 ADARB2-AS1A8MUL3 147 aa7.83□□□□□ -1.16
VRK3-216ENST00000599342 E9PI62 339 aa7.83□□□□□ -1.16
VRK3-216ENST00000599342 GABRPO00591 440 aa7.83□□□□□ -1.16
VRK3-216ENST00000599342 FAM106CPP0CH98 169 aa7.83□□□□□ -1.16
VRK3-216ENST00000599342 SOX2P48431 317 aa7.83□□□□□ -1.16
VRK3-216ENST00000599342 KCNJ3P48549 501 aa7.83□□□□□ -1.16
VRK3-216ENST00000599342 PPP3R1P63098 170 aa7.83□□□□□ -1.16
VRK3-216ENST00000599342 CD83Q01151 205 aa7.83□□□□□ -1.16
VRK3-216ENST00000599342 IL13RA2Q14627 380 aa7.83□□□□□ -1.16
VRK3-216ENST00000599342 C17orf58Q2M2W7 97 aa7.83□□□□□ -1.16
VRK3-216ENST00000599342 KLHL22Q53GT1 634 aa7.83□□□□□ -1.16
VRK3-216ENST00000599342 FBLN7Q53RD9 439 aa7.83□□□□□ -1.16
VRK3-216ENST00000599342 C9orf152Q5JTZ5 239 aa7.83□□□□□ -1.16
VRK3-216ENST00000599342 ELP2Q6IA86 826 aa7.83□□□□□ -1.16
VRK3-216ENST00000599342 RHOXF1Q8NHV9 184 aa7.83□□□□□ -1.16
VRK3-216ENST00000599342 CNIH3Q8TBE1 160 aa7.83□□□□□ -1.16
VRK3-216ENST00000599342 GPR148Q8TDV2 347 aa7.83□□□□□ -1.16
VRK3-216ENST00000599342 PHF21AQ96BD5 680 aa7.83□□□□□ -1.16
VRK3-216ENST00000599342 KIRREL1Q96J84 757 aa7.83□□□□□ -1.16
VRK3-216ENST00000599342 JAM3Q9BX67 310 aa7.83□□□□□ -1.16
VRK3-216ENST00000599342 CALYQ9NYX4 217 aa7.83□□□□□ -1.16
VRK3-216ENST00000599342 KIF25Q9UIL4 384 aa7.83□□□□□ -1.16
VRK3-216ENST00000599342 MOB4Q9Y3A3 225 aa7.83□□□□□ -1.16
VRK3-216ENST00000599342 TSSC4Q9Y5U2 329 aaPredicted RBP7.83□□□□□ -1.16
VRK3-216ENST00000599342 HSPE1-MOB4S4R3N1 261 aa7.83□□□□□ -1.16
VRK3-216ENST00000599342 HTR3BO95264 441 aa7.82□□□□□ -1.16
VRK3-216ENST00000599342 CLIC3O95833 236 aa7.82□□□□□ -1.16
VRK3-216ENST00000599342 IL1AP01583 271 aa7.82□□□□□ -1.16
VRK3-216ENST00000599342 CSTBP04080 98 aaKnown RBP7.82□□□□□ -1.16
VRK3-216ENST00000599342 GTF2A1P52655 376 aaPredicted RBP7.82□□□□□ -1.16
VRK3-216ENST00000599342 SLC35A2P78381 396 aa7.82□□□□□ -1.16
VRK3-216ENST00000599342 LTC4SQ16873 150 aa7.82□□□□□ -1.16
VRK3-216ENST00000599342 CCDC58Q4VC31 144 aa7.82□□□□□ -1.16
VRK3-216ENST00000599342 TMPRSS11AQ6ZMR5 421 aa7.82□□□□□ -1.16
VRK3-216ENST00000599342 Q6ZPA2 131 aa7.82□□□□□ -1.16
VRK3-216ENST00000599342 PQLC1Q8N2U9 271 aa7.82□□□□□ -1.16
VRK3-216ENST00000599342 ZNF555Q8NEP9 628 aa7.82□□□□□ -1.16
VRK3-216ENST00000599342 OR51A2Q8NGJ7 313 aa7.82□□□□□ -1.16
VRK3-216ENST00000599342 OR13A1Q8NGR1 328 aa7.82□□□□□ -1.16
VRK3-216ENST00000599342 OR10K1Q8NGX5 313 aa7.82□□□□□ -1.16
VRK3-216ENST00000599342 S100A13Q99584 98 aa7.82□□□□□ -1.16
VRK3-216ENST00000599342 ZNF649Q9BS31 505 aa7.82□□□□□ -1.16
VRK3-216ENST00000599342 NCOR1P1Q9H4R4 102 aa7.82□□□□□ -1.16
VRK3-216ENST00000599342 S100A14Q9HCY8 104 aa7.82□□□□□ -1.16
VRK3-216ENST00000599342 MRPS18AQ9NVS2 196 aaKnown RBP7.82□□□□□ -1.16
VRK3-216ENST00000599342 FAM118AQ9NWS6 357 aa7.82□□□□□ -1.16
VRK3-216ENST00000599342 TAS2R4Q9NYW5 299 aa7.82□□□□□ -1.16
VRK3-216ENST00000599342 IDI2-AS1Q9NZ38 188 aa7.82□□□□□ -1.16
VRK3-216ENST00000599342 PLXNB1O43157 2135 aa7.81□□□□□ -1.16
VRK3-216ENST00000599342 TRAV24A0A0B4J272 114 aa7.81□□□□□ -1.16
VRK3-216ENST00000599342 IRGMA1A4Y4 181 aa7.81□□□□□ -1.16
VRK3-216ENST00000599342 SH2D7A6NKC9 451 aaPredicted RBP7.81□□□□□ -1.16
VRK3-216ENST00000599342 LY6LH3BQJ8 138 aa7.81□□□□□ -1.16
VRK3-216ENST00000599342 J3QR06 171 aa7.81□□□□□ -1.16
VRK3-216ENST00000599342 OR7C1O76099 320 aaPredicted RBP7.81□□□□□ -1.16
VRK3-216ENST00000599342 IGHV3-7P01780 117 aa7.81□□□□□ -1.16
VRK3-216ENST00000599342 IGLL1P15814 213 aa7.81□□□□□ -1.16
VRK3-216ENST00000599342 MYL12AP19105 171 aa7.81□□□□□ -1.16
VRK3-216ENST00000599342 ZNF93P35789 620 aaPredicted RBP7.81□□□□□ -1.16
VRK3-216ENST00000599342 GNG10P50151 68 aa7.81□□□□□ -1.16
VRK3-216ENST00000599342 RAB7AP51149 207 aa7.81□□□□□ -1.16
VRK3-216ENST00000599342 LOXL3P58215 753 aa7.81□□□□□ -1.16
VRK3-216ENST00000599342 MADCAM1Q13477 382 aa7.81□□□□□ -1.16
VRK3-216ENST00000599342 HES1Q14469 280 aa7.81□□□□□ -1.16
VRK3-216ENST00000599342 PIGYQ3MUY2 71 aa7.81□□□□□ -1.16
VRK3-216ENST00000599342 DDI2Q5TDH0 399 aa7.81□□□□□ -1.16
VRK3-216ENST00000599342 RSBN1Q5VWQ0 802 aaPredicted RBP7.81□□□□□ -1.16
VRK3-216ENST00000599342 FOXB2Q5VYV0 432 aa7.81□□□□□ -1.16
VRK3-216ENST00000599342 ZNF529Q6P280 563 aa7.81□□□□□ -1.16
VRK3-216ENST00000599342 RPL22L1Q6P5R6 122 aaKnown RBP7.81□□□□□ -1.16
VRK3-216ENST00000599342 OSR2Q8N2R0 312 aa7.81□□□□□ -1.16
VRK3-216ENST00000599342 OR10X1Q8NGY0 326 aa7.81□□□□□ -1.16
VRK3-216ENST00000599342 OR56B4Q8NH76 319 aa7.81□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms