RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 TOMM40LQ969M1 308 aa12.03□□□□□ -0.48
LIG3-205ENST00000585941 WDR89Q96FK6 387 aaPredicted RBP12.03□□□□□ -0.48
LIG3-205ENST00000585941 LIME1Q9H400 295 aa12.03□□□□□ -0.48
LIG3-205ENST00000585941 JKAMPQ9P055 326 aa12.03□□□□□ -0.48
LIG3-205ENST00000585941 PCDHB10Q9UN67 800 aa12.03□□□□□ -0.48
LIG3-205ENST00000585941 U3KQ87 197 aa12.03□□□□□ -0.48
LIG3-205ENST00000585941 DMXL2Q8TDJ6 3036 aa12.02□□□□□ -0.48
LIG3-205ENST00000585941 A6NLC8 198 aa12.02□□□□□ -0.49
LIG3-205ENST00000585941 FAM25EA8MYX2 175 aa12.02□□□□□ -0.49
LIG3-205ENST00000585941 CCSO14618 274 aa12.02□□□□□ -0.49
LIG3-205ENST00000585941 ARPC5O15511 151 aa12.02□□□□□ -0.49
LIG3-205ENST00000585941 OR2H2O95918 312 aa12.02□□□□□ -0.49
LIG3-205ENST00000585941 PPYP01298 95 aa12.02□□□□□ -0.49
LIG3-205ENST00000585941 IFNA7P01567 189 aa12.02□□□□□ -0.49
LIG3-205ENST00000585941 CXCL2P19875 107 aa12.02□□□□□ -0.49
LIG3-205ENST00000585941 S100A11P31949 105 aa12.02□□□□□ -0.49
LIG3-205ENST00000585941 CD200P41217 278 aa12.02□□□□□ -0.49
LIG3-205ENST00000585941 PIGPP57054 158 aa12.02□□□□□ -0.49
LIG3-205ENST00000585941 OPCMLQ14982 345 aa12.02□□□□□ -0.49
LIG3-205ENST00000585941 GAPTQ8N292 157 aa12.02□□□□□ -0.49
LIG3-205ENST00000585941 GALNT14Q96FL9 552 aa12.02□□□□□ -0.49
LIG3-205ENST00000585941 RSRP1Q9BUV0 290 aa12.02□□□□□ -0.49
LIG3-205ENST00000585941 SUCNR1Q9BXA5 334 aa12.02□□□□□ -0.49
LIG3-205ENST00000585941 HEXA-AS1Q9H8Q6 139 aa12.02□□□□□ -0.49
LIG3-205ENST00000585941 TMEM165Q9HC07 324 aa12.02□□□□□ -0.49
LIG3-205ENST00000585941 SHANK1Q9Y566 2161 aa12.02□□□□□ -0.49
LIG3-205ENST00000585941 DCHS1Q96JQ0 3298 aa12.01□□□□□ -0.49
LIG3-205ENST00000585941 PIEZO2Q9H5I5 2752 aa12.01□□□□□ -0.49
LIG3-205ENST00000585941 TRAV14DV4A0A0A6YYC5 116 aa12.01□□□□□ -0.49
LIG3-205ENST00000585941 C1QTNF9BB2RNN3 333 aa12.01□□□□□ -0.49
LIG3-205ENST00000585941 SLC33A1O00400 549 aaPredicted RBP12.01□□□□□ -0.49
LIG3-205ENST00000585941 HSPB6O14558 160 aa12.01□□□□□ -0.49
LIG3-205ENST00000585941 PTBP3O95758 552 aaKnown RBP12.01□□□□□ -0.49
LIG3-205ENST00000585941 AADACP22760 399 aa12.01□□□□□ -0.49
LIG3-205ENST00000585941 LMO1P25800 156 aa12.01□□□□□ -0.49
LIG3-205ENST00000585941 SSTR2P30874 369 aa12.01□□□□□ -0.49
LIG3-205ENST00000585941 SERPINF1P36955 418 aa12.01□□□□□ -0.49
LIG3-205ENST00000585941 KCNJ3P48549 501 aa12.01□□□□□ -0.49
LIG3-205ENST00000585941 CASP6P55212 293 aa12.01□□□□□ -0.49
LIG3-205ENST00000585941 FXYD4P59646 89 aa12.01□□□□□ -0.49
LIG3-205ENST00000585941 KLRB1Q12918 225 aa12.01□□□□□ -0.49
LIG3-205ENST00000585941 SMIM21Q3B7S5 101 aa12.01□□□□□ -0.49
LIG3-205ENST00000585941 ANKRD55Q3KP44 614 aa12.01□□□□□ -0.49
LIG3-205ENST00000585941 IGSF11Q5DX21 431 aa12.01□□□□□ -0.49
LIG3-205ENST00000585941 C11orf87Q6NUJ2 197 aa12.01□□□□□ -0.49
LIG3-205ENST00000585941 TMEM108Q6UXF1 575 aa12.01□□□□□ -0.49
LIG3-205ENST00000585941 ZNF497Q6ZNH5 498 aa12.01□□□□□ -0.49
LIG3-205ENST00000585941 ZNF546Q86UE3 836 aa12.01□□□□□ -0.49
LIG3-205ENST00000585941 C11orf53Q8IXP5 236 aa12.01□□□□□ -0.49
LIG3-205ENST00000585941 OR5T2Q8NGG2 359 aa12.01□□□□□ -0.49
LIG3-205ENST00000585941 OR10Z1Q8NGY1 313 aa12.01□□□□□ -0.49
LIG3-205ENST00000585941 PRR7Q8TB68 274 aa12.01□□□□□ -0.49
LIG3-205ENST00000585941 THAP6Q8TBB0 222 aa12.01□□□□□ -0.49
LIG3-205ENST00000585941 PPP1R1CQ8WVI7 109 aa12.01□□□□□ -0.49
LIG3-205ENST00000585941 RND1Q92730 232 aa12.01□□□□□ -0.49
LIG3-205ENST00000585941 SEC22AQ96IW7 307 aa12.01□□□□□ -0.49
LIG3-205ENST00000585941 VKORC1Q9BQB6 163 aa12.01□□□□□ -0.49
LIG3-205ENST00000585941 NAA60Q9H7X0 242 aa12.01□□□□□ -0.49
LIG3-205ENST00000585941 METTL8Q9H825 291 aaKnown RBP12.01□□□□□ -0.49
LIG3-205ENST00000585941 MSL2Q9HCI7 577 aa12.01□□□□□ -0.49
LIG3-205ENST00000585941 RASL12Q9NYN1 266 aa12.01□□□□□ -0.49
LIG3-205ENST00000585941 FZR1Q9UM11 496 aa12.01□□□□□ -0.49
LIG3-205ENST00000585941 MEMO1Q9Y316 297 aa12.01□□□□□ -0.49
LIG3-205ENST00000585941 IGLV3-9A0A075B6K5 115 aa12□□□□□ -0.49
LIG3-205ENST00000585941 A0A0D9SG52 128 aa12□□□□□ -0.49
LIG3-205ENST00000585941 C13orf42A0A1B0GVH6 325 aa12□□□□□ -0.49
LIG3-205ENST00000585941 IFNL4K9M1U5 179 aa12□□□□□ -0.49
LIG3-205ENST00000585941 TUSC2O75896 110 aa12□□□□□ -0.49
LIG3-205ENST00000585941 HAND1O96004 215 aa12□□□□□ -0.49
LIG3-205ENST00000585941 PTAFRP25105 342 aa12□□□□□ -0.49
LIG3-205ENST00000585941 CD40P25942 277 aa12□□□□□ -0.49
LIG3-205ENST00000585941 PSMB6P28072 239 aa12□□□□□ -0.49
LIG3-205ENST00000585941 CFHR2P36980 270 aa12□□□□□ -0.49
LIG3-205ENST00000585941 HLA-DRB3P79483 266 aa12□□□□□ -0.49
LIG3-205ENST00000585941 ALKBH2Q6NS38 261 aa12□□□□□ -0.49
LIG3-205ENST00000585941 WDR82Q6UXN9 313 aa12□□□□□ -0.49
LIG3-205ENST00000585941 TMUB2Q71RG4 321 aa12□□□□□ -0.49
LIG3-205ENST00000585941 FAM90A1Q86YD7 464 aa12□□□□□ -0.49
LIG3-205ENST00000585941 ZNF680Q8NEM1 530 aa12□□□□□ -0.49
LIG3-205ENST00000585941 RTN4IP1Q8WWV3 396 aaPredicted RBP12□□□□□ -0.49
LIG3-205ENST00000585941 FAM210AQ96ND0 272 aa12□□□□□ -0.49
LIG3-205ENST00000585941 MFFQ9GZY8 342 aa12□□□□□ -0.49
LIG3-205ENST00000585941 SLC2A9Q9NRM0 540 aa12□□□□□ -0.49
LIG3-205ENST00000585941 DUSP13Q9UII6 198 aa12□□□□□ -0.49
LIG3-205ENST00000585941 SIRPB1O00241 398 aa12□□□□□ -0.49
LIG3-205ENST00000585941 IFNA21P01568 189 aa12□□□□□ -0.49
LIG3-205ENST00000585941 SCTP09683 121 aa12□□□□□ -0.49
LIG3-205ENST00000585941 SRPXP78539 464 aa12□□□□□ -0.49
LIG3-205ENST00000585941 ZNF345Q14585 488 aa12□□□□□ -0.49
LIG3-205ENST00000585941 IGFBP7Q16270 282 aa12□□□□□ -0.49
LIG3-205ENST00000585941 ACP7Q6ZNF0 438 aa12□□□□□ -0.49
LIG3-205ENST00000585941 ZNF565Q8N9K5 539 aa12□□□□□ -0.49
LIG3-205ENST00000585941 NUP37Q8NFH4 326 aa12□□□□□ -0.49
LIG3-205ENST00000585941 OR2Z1Q8NG97 314 aa12□□□□□ -0.49
LIG3-205ENST00000585941 TMEM171Q8WVE6 324 aa12□□□□□ -0.49
LIG3-205ENST00000585941 C2orf50Q96LR7 162 aa12□□□□□ -0.49
LIG3-205ENST00000585941 CABLES2Q9BTV7 478 aa12□□□□□ -0.49
LIG3-205ENST00000585941 SEBOXQ9HB31 216 aaPredicted RBP12□□□□□ -0.49
LIG3-205ENST00000585941 TAAR3PQ9P1P4 343 aa12□□□□□ -0.49
LIG3-205ENST00000585941 SPTBN4Q9H254 2564 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms