RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 PSME2Q9UL46 239 aa1.92□□□□□ -2.1
SS18-214ENST00000580003 TRAV8-3A0A0A6YYJ7 113 aa1.91□□□□□ -2.1
SS18-214ENST00000580003 A0A1W2PRG6 482 aa1.91□□□□□ -2.1
SS18-214ENST00000580003 M0QXV9 152 aa1.91□□□□□ -2.1
SS18-214ENST00000580003 MYO1DO94832 1006 aa1.91□□□□□ -2.1
SS18-214ENST00000580003 TPM2P07951 284 aa1.91□□□□□ -2.1
SS18-214ENST00000580003 CEACAM21Q3KPI0 293 aa1.91□□□□□ -2.1
SS18-214ENST00000580003 Q6ZRU5 148 aa1.91□□□□□ -2.1
SS18-214ENST00000580003 OR10P1Q8NGE3 313 aa1.91□□□□□ -2.1
SS18-214ENST00000580003 CLHC1Q8NHS4 586 aa1.91□□□□□ -2.1
SS18-214ENST00000580003 CASTOR1Q8WTX7 329 aa1.91□□□□□ -2.1
SS18-214ENST00000580003 KIAA1143Q96AT1 154 aaPredicted RBP1.91□□□□□ -2.1
SS18-214ENST00000580003 CHID1Q9BWS9 393 aa1.91□□□□□ -2.1
SS18-214ENST00000580003 SDHAF2Q9NX18 166 aa1.91□□□□□ -2.1
SS18-214ENST00000580003 PLXNA3P51805 1871 aa1.9□□□□□ -2.1
SS18-214ENST00000580003 A0A1B0GXF2 115 aa1.9□□□□□ -2.11
SS18-214ENST00000580003 C19orf71A6NCJ1 209 aa1.9□□□□□ -2.11
SS18-214ENST00000580003 H3BP45 60 aa1.9□□□□□ -2.11
SS18-214ENST00000580003 PRKACAP17612 351 aa1.9□□□□□ -2.11
SS18-214ENST00000580003 C2orf80Q0P641 193 aa1.9□□□□□ -2.11
SS18-214ENST00000580003 WDR43Q15061 677 aaKnown RBP eCLIP1.9□□□□□ -2.11
SS18-214ENST00000580003 MMDQ15546 238 aa1.9□□□□□ -2.11
SS18-214ENST00000580003 DRAXINQ8NBI3 349 aaPredicted RBP1.9□□□□□ -2.11
SS18-214ENST00000580003 OR11G2Q8NGC1 345 aa1.9□□□□□ -2.11
SS18-214ENST00000580003 OR4C16Q8NGL9 310 aa1.9□□□□□ -2.11
SS18-214ENST00000580003 OR4A5Q8NH83 315 aa1.9□□□□□ -2.11
SS18-214ENST00000580003 DDIT4LQ96D03 193 aa1.9□□□□□ -2.11
SS18-214ENST00000580003 DNAJC30Q96LL9 226 aa1.9□□□□□ -2.11
SS18-214ENST00000580003 UTP23Q9BRU9 249 aaKnown RBP1.9□□□□□ -2.11
SS18-214ENST00000580003 LINC00588Q9Y4M8 146 aa1.9□□□□□ -2.11
SS18-214ENST00000580003 PHLDA3Q9Y5J5 127 aa1.9□□□□□ -2.11
SS18-214ENST00000580003 SHANK3Q9BYB0 1731 aa1.89□□□□□ -2.11
SS18-214ENST00000580003 PRMT5O14744 637 aaPredicted RBP1.89□□□□□ -2.11
SS18-214ENST00000580003 SPOPO43791 374 aa1.89□□□□□ -2.11
SS18-214ENST00000580003 RAB36O95755 333 aa1.89□□□□□ -2.11
SS18-214ENST00000580003 MBP02144 154 aa1.89□□□□□ -2.11
SS18-214ENST00000580003 MAGEA6P43360 314 aa1.89□□□□□ -2.11
SS18-214ENST00000580003 ELP2Q6IA86 826 aa1.89□□□□□ -2.11
SS18-214ENST00000580003 ASCL4Q6XD76 172 aa1.89□□□□□ -2.11
SS18-214ENST00000580003 C10orf107Q8IVU9 208 aa1.89□□□□□ -2.11
SS18-214ENST00000580003 NELFBQ8WX92 580 aa1.89□□□□□ -2.11
SS18-214ENST00000580003 REEP6Q96HR9 211 aa1.89□□□□□ -2.11
SS18-214ENST00000580003 BCL2L14Q9BZR8 327 aa1.89□□□□□ -2.11
SS18-214ENST00000580003 CXCL16Q9H2A7 254 aa1.89□□□□□ -2.11
SS18-214ENST00000580003 VAPAQ9P0L0 249 aa1.89□□□□□ -2.11
SS18-214ENST00000580003 ADAMTSL3P82987 1691 aa1.88□□□□□ -2.11
SS18-214ENST00000580003 A0A1W2PPV4 95 aa1.88□□□□□ -2.11
SS18-214ENST00000580003 K7EN84 100 aa1.88□□□□□ -2.11
SS18-214ENST00000580003 GMDSO60547 372 aa1.88□□□□□ -2.11
SS18-214ENST00000580003 EVI2BP34910 448 aa1.88□□□□□ -2.11
SS18-214ENST00000580003 RESP18Q5W5W9 173 aa1.88□□□□□ -2.11
SS18-214ENST00000580003 MUC15Q8N387 334 aa1.88□□□□□ -2.11
SS18-214ENST00000580003 C2orf73Q8N5S3 287 aaPredicted RBP1.88□□□□□ -2.11
SS18-214ENST00000580003 OR6N2Q8NGY6 317 aa1.88□□□□□ -2.11
SS18-214ENST00000580003 APOL4Q9BPW4 351 aa1.88□□□□□ -2.11
SS18-214ENST00000580003 FBXO44Q9H4M3 255 aa1.88□□□□□ -2.11
SS18-214ENST00000580003 ATRNO75882 1429 aa1.88□□□□□ -2.11
SS18-214ENST00000580003 STRCP1A6NGW2 1772 aa1.87□□□□□ -2.11
SS18-214ENST00000580003 ADGRB3O60242 1522 aa1.87□□□□□ -2.11
SS18-214ENST00000580003 ADAMTS7Q9UKP4 1686 aa1.87□□□□□ -2.11
SS18-214ENST00000580003 A0A1W2PQL4 384 aaPredicted RBP1.87□□□□□ -2.11
SS18-214ENST00000580003 ZNF860A6NHJ4 632 aa1.87□□□□□ -2.11
SS18-214ENST00000580003 ARGFXA6NJG6 315 aa1.87□□□□□ -2.11
SS18-214ENST00000580003 ODF3BA8MYP8 253 aa1.87□□□□□ -2.11
SS18-214ENST00000580003 H3BRN7 92 aa1.87□□□□□ -2.11
SS18-214ENST00000580003 TCF21O43680 179 aa1.87□□□□□ -2.11
SS18-214ENST00000580003 SLC25A20O43772 301 aa1.87□□□□□ -2.11
SS18-214ENST00000580003 SOX14O95416 240 aa1.87□□□□□ -2.11
SS18-214ENST00000580003 CD8AP01732 235 aa1.87□□□□□ -2.11
SS18-214ENST00000580003 STX4Q12846 297 aa1.87□□□□□ -2.11
SS18-214ENST00000580003 CEP170Q5SW79 1584 aa1.87□□□□□ -2.11
SS18-214ENST00000580003 SLC19A3Q9BZV2 496 aa1.87□□□□□ -2.11
SS18-214ENST00000580003 ANKHQ9HCJ1 492 aa1.87□□□□□ -2.11
SS18-214ENST00000580003 AK9Q5TCS8 1911 aa1.86□□□□□ -2.11
SS18-214ENST00000580003 IGHV2-26A0A0B4J1V2 119 aa1.86□□□□□ -2.11
SS18-214ENST00000580003 SLC2A1P11166 492 aa1.86□□□□□ -2.11
SS18-214ENST00000580003 CPMP14384 443 aa1.86□□□□□ -2.11
SS18-214ENST00000580003 GCLMP48507 274 aa1.86□□□□□ -2.11
SS18-214ENST00000580003 TTPAP49638 278 aa1.86□□□□□ -2.11
SS18-214ENST00000580003 DSTNP60981 165 aa1.86□□□□□ -2.11
SS18-214ENST00000580003 APOFQ13790 326 aa1.86□□□□□ -2.11
SS18-214ENST00000580003 C16orf87Q6PH81 154 aa1.86□□□□□ -2.11
SS18-214ENST00000580003 Q6ZSA8 131 aa1.86□□□□□ -2.11
SS18-214ENST00000580003 TCAIMQ8N3R3 496 aa1.86□□□□□ -2.11
SS18-214ENST00000580003 KRTCAP2Q8N6L1 136 aa1.86□□□□□ -2.11
SS18-214ENST00000580003 KCTD4Q8WVF5 259 aa1.86□□□□□ -2.11
SS18-214ENST00000580003 VCX3AQ9NNX9 186 aa1.86□□□□□ -2.11
SS18-214ENST00000580003 PRRC2BQ5JSZ5 2229 aaKnown RBP1.85□□□□□ -2.11
SS18-214ENST00000580003 ENSAO43768 121 aaKnown RBP1.85□□□□□ -2.11
SS18-214ENST00000580003 TOP1MTQ969P6 601 aa1.85□□□□□ -2.11
SS18-214ENST00000580003 BIRC8Q96P09 236 aa1.85□□□□□ -2.11
SS18-214ENST00000580003 NCOR1P1Q9H4R4 102 aa1.85□□□□□ -2.11
SS18-214ENST00000580003 PSORS1C2Q9UIG4 136 aa1.85□□□□□ -2.11
SS18-214ENST00000580003 BTRCQ9Y297 605 aa1.85□□□□□ -2.11
SS18-214ENST00000580003 LCTP09848 1927 aa1.85□□□□□ -2.11
SS18-214ENST00000580003 PTPRKQ15262 1439 aa1.84□□□□□ -2.11
SS18-214ENST00000580003 GBF1Q92538 1859 aa1.84□□□□□ -2.11
SS18-214ENST00000580003 DOCK10Q96BY6 2186 aa1.84□□□□□ -2.11
SS18-214ENST00000580003 GOLGA6L7A0A1B0GV03 622 aa1.84□□□□□ -2.11
SS18-214ENST00000580003 PLPP3O14495 311 aa1.84□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 177.3 ms