RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 ST3GAL6Q9Y274 331 aa19.35■□□□□ 0.69
SHMT1-206ENST00000579558 H0YHG0 523 aa19.34■□□□□ 0.69
SHMT1-206ENST00000579558 MYF6P23409 242 aa19.34■□□□□ 0.69
SHMT1-206ENST00000579558 FAM189A2Q15884 450 aa19.34■□□□□ 0.69
SHMT1-206ENST00000579558 SSX2Q16385 188 aa19.34■□□□□ 0.69
SHMT1-206ENST00000579558 LDLRAD2Q5SZI1 272 aa19.34■□□□□ 0.69
SHMT1-206ENST00000579558 OR52W1Q6IF63 320 aa19.34■□□□□ 0.69
SHMT1-206ENST00000579558 HEPN1Q6WQI6 88 aa19.34■□□□□ 0.69
SHMT1-206ENST00000579558 JAGN1Q8N5M9 183 aa19.34■□□□□ 0.69
SHMT1-206ENST00000579558 SGCDQ92629 289 aa19.34■□□□□ 0.69
SHMT1-206ENST00000579558 THRSPQ92748 146 aa19.34■□□□□ 0.69
SHMT1-206ENST00000579558 C16orf95Q9H693 158 aa19.34■□□□□ 0.69
SHMT1-206ENST00000579558 OR6C3Q9NZP0 311 aa19.34■□□□□ 0.69
SHMT1-206ENST00000579558 ZNF780AO75290 641 aaPredicted RBP19.33■□□□□ 0.68
SHMT1-206ENST00000579558 TSPAN9O75954 239 aa19.33■□□□□ 0.68
SHMT1-206ENST00000579558 MAS1P04201 325 aa19.33■□□□□ 0.68
SHMT1-206ENST00000579558 MAPK3P27361 379 aaPredicted RBP19.33■□□□□ 0.68
SHMT1-206ENST00000579558 RBM11P57052 281 aaKnown RBP19.33■□□□□ 0.68
SHMT1-206ENST00000579558 NHLRC3Q5JS37 347 aa19.33■□□□□ 0.68
SHMT1-206ENST00000579558 MINOS1Q5TGZ0 78 aa19.33■□□□□ 0.68
SHMT1-206ENST00000579558 BAIAP2L2Q6UXY1 529 aa19.33■□□□□ 0.68
SHMT1-206ENST00000579558 NDNFQ8TB73 568 aa19.33■□□□□ 0.68
SHMT1-206ENST00000579558 PIFOQ8TCI5 191 aa19.33■□□□□ 0.68
SHMT1-206ENST00000579558 MUL1Q969V5 352 aa19.33■□□□□ 0.68
SHMT1-206ENST00000579558 ANKRD60Q9BZ19 345 aa19.33■□□□□ 0.68
SHMT1-206ENST00000579558 PCDHB16Q9NRJ7 776 aa19.33■□□□□ 0.68
SHMT1-206ENST00000579558 ABCB10Q9NRK6 738 aa19.33■□□□□ 0.68
SHMT1-206ENST00000579558 KIF25Q9UIL4 384 aa19.33■□□□□ 0.68
SHMT1-206ENST00000579558 TPRKBQ9Y3C4 175 aa19.33■□□□□ 0.68
SHMT1-206ENST00000579558 MINOS1-NBL1R4GNA1 71 aa19.33■□□□□ 0.68
SHMT1-206ENST00000579558 MEIKINA0A087WXM9 373 aa19.32■□□□□ 0.68
SHMT1-206ENST00000579558 ZNF729A6NN14 1252 aaPredicted RBP19.32■□□□□ 0.68
SHMT1-206ENST00000579558 VGLL3A8MV65 326 aa19.32■□□□□ 0.68
SHMT1-206ENST00000579558 PIN1P1O15428 100 aa19.32■□□□□ 0.68
SHMT1-206ENST00000579558 OR7C1O76099 320 aaPredicted RBP19.32■□□□□ 0.68
SHMT1-206ENST00000579558 GLP1RP43220 463 aa19.32■□□□□ 0.68
SHMT1-206ENST00000579558 SLC35A2P78381 396 aa19.32■□□□□ 0.68
SHMT1-206ENST00000579558 SRSF4Q08170 494 aaKnown RBP19.32■□□□□ 0.68
SHMT1-206ENST00000579558 SPHARQ15513 63 aa19.32■□□□□ 0.68
SHMT1-206ENST00000579558 SLC22A6Q4U2R8 563 aa19.32■□□□□ 0.68
SHMT1-206ENST00000579558 IZUMO2Q6UXV1 221 aa19.32■□□□□ 0.68
SHMT1-206ENST00000579558 ABHD12Q8N2K0 398 aa19.32■□□□□ 0.68
SHMT1-206ENST00000579558 OR4D6Q8NGJ1 314 aa19.32■□□□□ 0.68
SHMT1-206ENST00000579558 OR5M11Q96RB7 305 aa19.32■□□□□ 0.68
SHMT1-206ENST00000579558 BARHL1Q9BZE3 327 aa19.32■□□□□ 0.68
SHMT1-206ENST00000579558 RAB18Q9NP72 206 aa19.32■□□□□ 0.68
SHMT1-206ENST00000579558 ZNF581Q9P0T4 197 aa19.32■□□□□ 0.68
SHMT1-206ENST00000579558 MRPS28Q9Y2Q9 187 aaKnown RBP19.32■□□□□ 0.68
SHMT1-206ENST00000579558 LSM2Q9Y333 95 aaKnown RBP19.32■□□□□ 0.68
SHMT1-206ENST00000579558 FAM172BPA6NC97 362 aa19.31■□□□□ 0.68
SHMT1-206ENST00000579558 GDNFP39905 211 aa19.31■□□□□ 0.68
SHMT1-206ENST00000579558 KCNJ3P48549 501 aa19.31■□□□□ 0.68
SHMT1-206ENST00000579558 PROK1P58294 105 aa19.31■□□□□ 0.68
SHMT1-206ENST00000579558 MED22Q15528 200 aa19.31■□□□□ 0.68
SHMT1-206ENST00000579558 BRICD5Q6PL45 260 aa19.31■□□□□ 0.68
SHMT1-206ENST00000579558 LIAT1Q6ZQX7 453 aa19.31■□□□□ 0.68
SHMT1-206ENST00000579558 LINC00596Q86U02 117 aa19.31■□□□□ 0.68
SHMT1-206ENST00000579558 RTN4RL2Q86UN3 420 aa19.31■□□□□ 0.68
SHMT1-206ENST00000579558 SUMF2Q8NBJ7 301 aa19.31■□□□□ 0.68
SHMT1-206ENST00000579558 PLPPR1Q8TBJ4 325 aa19.31■□□□□ 0.68
SHMT1-206ENST00000579558 DPCDQ9BVM2 203 aaPredicted RBP19.31■□□□□ 0.68
SHMT1-206ENST00000579558 NCOR1P1Q9H4R4 102 aa19.31■□□□□ 0.68
SHMT1-206ENST00000579558 IFT22Q9H7X7 185 aa19.31■□□□□ 0.68
SHMT1-206ENST00000579558 HILPDAQ9Y5L2 63 aa19.31■□□□□ 0.68
SHMT1-206ENST00000579558 A0A1W2PP11 408 aa19.3■□□□□ 0.68
SHMT1-206ENST00000579558 GEMIN2O14893 280 aaKnown RBP19.3■□□□□ 0.68
SHMT1-206ENST00000579558 GTF2F2P13984 249 aa19.3■□□□□ 0.68
SHMT1-206ENST00000579558 HTR1DP28221 377 aa19.3■□□□□ 0.68
SHMT1-206ENST00000579558 HSPA13P48723 471 aa19.3■□□□□ 0.68
SHMT1-206ENST00000579558 RAB13P51153 203 aa19.3■□□□□ 0.68
SHMT1-206ENST00000579558 GPR176Q14439 515 aa19.3■□□□□ 0.68
SHMT1-206ENST00000579558 IRF3Q14653 427 aa19.3■□□□□ 0.68
SHMT1-206ENST00000579558 C17orf58Q2M2W7 97 aa19.3■□□□□ 0.68
SHMT1-206ENST00000579558 RSBN1Q5VWQ0 802 aaPredicted RBP19.3■□□□□ 0.68
SHMT1-206ENST00000579558 SLC35E4Q6ICL7 350 aa19.3■□□□□ 0.68
SHMT1-206ENST00000579558 GLIPR1L1Q6UWM5 242 aa19.3■□□□□ 0.68
SHMT1-206ENST00000579558 CDH26Q8IXH8 852 aa19.3■□□□□ 0.68
SHMT1-206ENST00000579558 MS4A15Q8N5U1 240 aa19.3■□□□□ 0.68
SHMT1-206ENST00000579558 ZNF565Q8N9K5 539 aa19.3■□□□□ 0.68
SHMT1-206ENST00000579558 OR4P4Q8NGL7 312 aa19.3■□□□□ 0.68
SHMT1-206ENST00000579558 OR13A1Q8NGR1 328 aa19.3■□□□□ 0.68
SHMT1-206ENST00000579558 ZNF696Q9H7X3 374 aa19.3■□□□□ 0.68
SHMT1-206ENST00000579558 KBTBD11-OT1A0A1B0GTJ5 212 aa19.29■□□□□ 0.68
SHMT1-206ENST00000579558 INSL4Q14641 139 aa19.29■□□□□ 0.68
SHMT1-206ENST00000579558 MPV17LQ2QL34 196 aa19.29■□□□□ 0.68
SHMT1-206ENST00000579558 ACSM3Q53FZ2 586 aa19.29■□□□□ 0.68
SHMT1-206ENST00000579558 PRR31Q5SQ13 230 aa19.29■□□□□ 0.68
SHMT1-206ENST00000579558 AWAT2Q6E213 333 aa19.29■□□□□ 0.68
SHMT1-206ENST00000579558 NKAIN3Q8N8D7 197 aa19.29■□□□□ 0.68
SHMT1-206ENST00000579558 OR4C13Q8NGP0 309 aa19.29■□□□□ 0.68
SHMT1-206ENST00000579558 ZNF596Q8TC21 504 aa19.29■□□□□ 0.68
SHMT1-206ENST00000579558 CITED1Q99966 193 aa19.29■□□□□ 0.68
SHMT1-206ENST00000579558 TMED9Q9BVK6 235 aa19.29■□□□□ 0.68
SHMT1-206ENST00000579558 DUSP21Q9H596 190 aa19.29■□□□□ 0.68
SHMT1-206ENST00000579558 ZNF286AQ9HBT8 521 aa19.29■□□□□ 0.68
SHMT1-206ENST00000579558 TCF19Q9Y242 345 aa19.29■□□□□ 0.68
SHMT1-206ENST00000579558 RGS10O43665 173 aa19.28■□□□□ 0.68
SHMT1-206ENST00000579558 CHST1O43916 411 aa19.28■□□□□ 0.68
SHMT1-206ENST00000579558 NFYBP25208 207 aa19.28■□□□□ 0.68
SHMT1-206ENST00000579558 CD34P28906 385 aa19.28■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms