RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 CR1LQ2VPA4 569 aa16.98■□□□□ 0.31
VPS53-210ENST00000571456 PDLIM3Q53GG5 364 aaPredicted RBP16.98■□□□□ 0.31
VPS53-210ENST00000571456 PAN3Q58A45 887 aaKnown RBP16.98■□□□□ 0.31
VPS53-210ENST00000571456 SFXN4Q6P4A7 337 aa16.98■□□□□ 0.31
VPS53-210ENST00000571456 TMEM104Q8NE00 496 aa16.98■□□□□ 0.31
VPS53-210ENST00000571456 RAB22AQ9UL26 194 aa16.98■□□□□ 0.31
VPS53-210ENST00000571456 AUP1Q9Y679 476 aa16.98■□□□□ 0.31
VPS53-210ENST00000571456 A0A1W2PP11 408 aa16.97■□□□□ 0.31
VPS53-210ENST00000571456 A0A1W2PQ09 198 aa16.97■□□□□ 0.31
VPS53-210ENST00000571456 FUT3P21217 361 aa16.97■□□□□ 0.31
VPS53-210ENST00000571456 OR10A3P58181 314 aa16.97■□□□□ 0.31
VPS53-210ENST00000571456 C2orf76Q3KRA6 126 aa16.97■□□□□ 0.31
VPS53-210ENST00000571456 HES5Q5TA89 166 aa16.97■□□□□ 0.31
VPS53-210ENST00000571456 METTL11BQ5VVY1 283 aa16.97■□□□□ 0.31
VPS53-210ENST00000571456 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP16.97■□□□□ 0.31
VPS53-210ENST00000571456 OR51D1Q8NGF3 324 aa16.97■□□□□ 0.31
VPS53-210ENST00000571456 RAB2BQ8WUD1 216 aa16.97■□□□□ 0.31
VPS53-210ENST00000571456 DPCDQ9BVM2 203 aaPredicted RBP16.97■□□□□ 0.31
VPS53-210ENST00000571456 TMPRSS13Q9BYE2 586 aa16.97■□□□□ 0.31
VPS53-210ENST00000571456 BANF2Q9H503 90 aa16.97■□□□□ 0.31
VPS53-210ENST00000571456 LIN7BQ9HAP6 207 aa16.97■□□□□ 0.31
VPS53-210ENST00000571456 TRAV24A0A0B4J272 114 aa16.96■□□□□ 0.31
VPS53-210ENST00000571456 MCRIP1C9JLW8 97 aa16.96■□□□□ 0.31
VPS53-210ENST00000571456 LDLRAD4O15165 306 aa16.96■□□□□ 0.31
VPS53-210ENST00000571456 SCGNO76038 276 aa16.96■□□□□ 0.31
VPS53-210ENST00000571456 RBP4P02753 201 aa16.96■□□□□ 0.31
VPS53-210ENST00000571456 TFF1P04155 84 aa16.96■□□□□ 0.31
VPS53-210ENST00000571456 TMBIM6P55061 237 aa16.96■□□□□ 0.31
VPS53-210ENST00000571456 P2RX3P56373 397 aa16.96■□□□□ 0.31
VPS53-210ENST00000571456 EDDM3BP56851 147 aa16.96■□□□□ 0.31
VPS53-210ENST00000571456 UNC119Q13432 240 aa16.96■□□□□ 0.31
VPS53-210ENST00000571456 P2RY14Q15391 338 aa16.96■□□□□ 0.31
VPS53-210ENST00000571456 SUMF2Q8NBJ7 301 aa16.96■□□□□ 0.31
VPS53-210ENST00000571456 OR4S1Q8NGB4 309 aa16.96■□□□□ 0.31
VPS53-210ENST00000571456 FAM46BQ96A09 425 aa16.96■□□□□ 0.31
VPS53-210ENST00000571456 ETV7Q9Y603 341 aa16.96■□□□□ 0.31
VPS53-210ENST00000571456 LINC00312Q9Y6C7 94 aa16.96■□□□□ 0.31
VPS53-210ENST00000571456 METTL21EPA6NDL7 271 aa16.95■□□□□ 0.3
VPS53-210ENST00000571456 NOL3O60936 208 aaKnown RBP16.95■□□□□ 0.3
VPS53-210ENST00000571456 PDCD6O75340 191 aa16.95■□□□□ 0.3
VPS53-210ENST00000571456 BPIFB3P59826 476 aa16.95■□□□□ 0.3
VPS53-210ENST00000571456 MXD1Q05195 221 aa16.95■□□□□ 0.3
VPS53-210ENST00000571456 ARL6IP1Q15041 203 aa16.95■□□□□ 0.3
VPS53-210ENST00000571456 PDCD1Q15116 288 aa16.95■□□□□ 0.3
VPS53-210ENST00000571456 CTF1Q16619 201 aa16.95■□□□□ 0.3
VPS53-210ENST00000571456 ATAD3CQ5T2N8 411 aa16.95■□□□□ 0.3
VPS53-210ENST00000571456 GPR107Q5VW38 600 aa16.95■□□□□ 0.3
VPS53-210ENST00000571456 SLC16A12Q6ZSM3 486 aa16.95■□□□□ 0.3
VPS53-210ENST00000571456 USP43Q70EL4 1123 aa16.95■□□□□ 0.3
VPS53-210ENST00000571456 NR2C2APQ86WQ0 139 aa16.95■□□□□ 0.3
VPS53-210ENST00000571456 FAM89BQ8N5H3 189 aa16.95■□□□□ 0.3
VPS53-210ENST00000571456 OR56B1Q8NGI3 324 aa16.95■□□□□ 0.3
VPS53-210ENST00000571456 NANPQ8TBE9 248 aa16.95■□□□□ 0.3
VPS53-210ENST00000571456 UPRTQ96BW1 309 aa16.95■□□□□ 0.3
VPS53-210ENST00000571456 KCTD12Q96CX2 325 aaKnown RBP16.95■□□□□ 0.3
VPS53-210ENST00000571456 NEDD4LQ96PU5 975 aa16.95■□□□□ 0.3
VPS53-210ENST00000571456 CHST6Q9GZX3 395 aa16.95■□□□□ 0.3
VPS53-210ENST00000571456 PPA2Q9H2U2 334 aa16.95■□□□□ 0.3
VPS53-210ENST00000571456 UNKLQ9H9P5 680 aaKnown RBP16.95■□□□□ 0.3
VPS53-210ENST00000571456 OR6C3Q9NZP0 311 aa16.95■□□□□ 0.3
VPS53-210ENST00000571456 ABRACLQ9P1F3 81 aa16.95■□□□□ 0.3
VPS53-210ENST00000571456 UBE2J1Q9Y385 318 aaPredicted RBP16.95■□□□□ 0.3
VPS53-210ENST00000571456 CLDN12P56749 244 aa16.94■□□□□ 0.3
VPS53-210ENST00000571456 DYNC1I2Q13409 638 aaKnown RBP16.94■□□□□ 0.3
VPS53-210ENST00000571456 KRBOX4Q5JUW0 171 aa16.94■□□□□ 0.3
VPS53-210ENST00000571456 SLC35E4Q6ICL7 350 aa16.94■□□□□ 0.3
VPS53-210ENST00000571456 RAB12Q6IQ22 244 aa16.94■□□□□ 0.3
VPS53-210ENST00000571456 FAM185AQ8N0U4 392 aa16.94■□□□□ 0.3
VPS53-210ENST00000571456 CORO2AQ92828 525 aa16.94■□□□□ 0.3
VPS53-210ENST00000571456 WDFY2Q96P53 400 aa16.94■□□□□ 0.3
VPS53-210ENST00000571456 LPAR5Q9H1C0 372 aa16.94■□□□□ 0.3
VPS53-210ENST00000571456 RNF167Q9H6Y7 350 aa16.94■□□□□ 0.3
VPS53-210ENST00000571456 METTL8Q9H825 291 aaKnown RBP16.94■□□□□ 0.3
VPS53-210ENST00000571456 TAS2R3Q9NYW6 316 aa16.94■□□□□ 0.3
VPS53-210ENST00000571456 DAPK2Q9UIK4 370 aa16.94■□□□□ 0.3
VPS53-210ENST00000571456 TRGV10A0A0A0MS01 117 aa16.93■□□□□ 0.3
VPS53-210ENST00000571456 TMEM272A0A1B0GTI8 110 aa16.93■□□□□ 0.3
VPS53-210ENST00000571456 POM121CA8CG34 1229 aa16.93■□□□□ 0.3
VPS53-210ENST00000571456 TOX4O94842 621 aa16.93■□□□□ 0.3
VPS53-210ENST00000571456 SERPINB10P48595 397 aa16.93■□□□□ 0.3
VPS53-210ENST00000571456 LSM3P62310 102 aaKnown RBP16.93■□□□□ 0.3
VPS53-210ENST00000571456 EDDM3AQ14507 147 aa16.93■□□□□ 0.3
VPS53-210ENST00000571456 TMEM200BQ69YZ2 307 aa16.93■□□□□ 0.3
VPS53-210ENST00000571456 OR10K2Q6IF99 312 aa16.93■□□□□ 0.3
VPS53-210ENST00000571456 METAP1DQ6UB28 335 aaPredicted RBP16.93■□□□□ 0.3
VPS53-210ENST00000571456 FGFRL1Q8N441 504 aa16.93■□□□□ 0.3
VPS53-210ENST00000571456 ZNF565Q8N9K5 539 aa16.93■□□□□ 0.3
VPS53-210ENST00000571456 NEK7Q8TDX7 302 aa16.93■□□□□ 0.3
VPS53-210ENST00000571456 SLC25A46Q96AG3 418 aa16.93■□□□□ 0.3
VPS53-210ENST00000571456 SIRPDQ9H106 197 aa16.93■□□□□ 0.3
VPS53-210ENST00000571456 GAL3ST2Q9H3Q3 398 aa16.93■□□□□ 0.3
VPS53-210ENST00000571456 C19orf12Q9NSK7 152 aa16.93■□□□□ 0.3
VPS53-210ENST00000571456 HSF4Q9ULV5 492 aa16.93■□□□□ 0.3
VPS53-210ENST00000571456 PEX16Q9Y5Y5 336 aa16.93■□□□□ 0.3
VPS53-210ENST00000571456 TMEM30CPA0ZSE6 113 aa16.92■□□□□ 0.3
VPS53-210ENST00000571456 ODAMA1E959 279 aa16.92■□□□□ 0.3
VPS53-210ENST00000571456 RPS19P39019 145 aaKnown RBP16.92■□□□□ 0.3
VPS53-210ENST00000571456 VBP1P61758 197 aa16.92■□□□□ 0.3
VPS53-210ENST00000571456 NCR3LG1Q68D85 454 aa16.92■□□□□ 0.3
VPS53-210ENST00000571456 CLVS1Q8IUQ0 354 aaPredicted RBP16.92■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms