RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 AESQ08117 197 aa10.63□□□□□ -0.71
CLK3-224ENST00000568605 RBM39Q14498 530 aaKnown RBP10.63□□□□□ -0.71
CLK3-224ENST00000568605 ATAD3CQ5T2N8 411 aa10.63□□□□□ -0.71
CLK3-224ENST00000568605 UBE2UQ5VVX9 321 aa10.63□□□□□ -0.71
CLK3-224ENST00000568605 ZNF782Q6ZMW2 699 aaPredicted RBP10.63□□□□□ -0.71
CLK3-224ENST00000568605 LDLRAD3Q86YD5 345 aa10.63□□□□□ -0.71
CLK3-224ENST00000568605 SPARTQ8N0X7 666 aa10.63□□□□□ -0.71
CLK3-224ENST00000568605 TMEM86BQ8N661 226 aa10.63□□□□□ -0.71
CLK3-224ENST00000568605 TPRX1Q8N7U7 411 aa10.63□□□□□ -0.71
CLK3-224ENST00000568605 ZDHHC22Q8N966 263 aa10.63□□□□□ -0.71
CLK3-224ENST00000568605 OR4D6Q8NGJ1 314 aa10.63□□□□□ -0.71
CLK3-224ENST00000568605 OR6M1Q8NGM8 313 aa10.63□□□□□ -0.71
CLK3-224ENST00000568605 SSMEM1Q8WWF3 244 aa10.63□□□□□ -0.71
CLK3-224ENST00000568605 DPCDQ9BVM2 203 aaPredicted RBP10.63□□□□□ -0.71
CLK3-224ENST00000568605 PRDM13Q9H4Q3 707 aa10.63□□□□□ -0.71
CLK3-224ENST00000568605 PLGRKTQ9HBL7 147 aa10.63□□□□□ -0.71
CLK3-224ENST00000568605 TAS2R3Q9NYW6 316 aa10.63□□□□□ -0.71
CLK3-224ENST00000568605 POMT1Q9Y6A1 747 aa10.63□□□□□ -0.71
CLK3-224ENST00000568605 TRAV24A0A0B4J272 114 aa10.62□□□□□ -0.71
CLK3-224ENST00000568605 A0A0U1RQK1 487 aa10.62□□□□□ -0.71
CLK3-224ENST00000568605 MDFIC2A0A1B0GVS7 189 aa10.62□□□□□ -0.71
CLK3-224ENST00000568605 ZNF729A6NN14 1252 aaPredicted RBP10.62□□□□□ -0.71
CLK3-224ENST00000568605 GEMIN2O14893 280 aaKnown RBP10.62□□□□□ -0.71
CLK3-224ENST00000568605 RNASE1P07998 156 aaKnown RBP10.62□□□□□ -0.71
CLK3-224ENST00000568605 IGHV1-8P0DP01 117 aa10.62□□□□□ -0.71
CLK3-224ENST00000568605 MGMTP16455 207 aa10.62□□□□□ -0.71
CLK3-224ENST00000568605 GALP22466 123 aa10.62□□□□□ -0.71
CLK3-224ENST00000568605 COX7A1P24310 79 aa10.62□□□□□ -0.71
CLK3-224ENST00000568605 HTR2CP28335 458 aa10.62□□□□□ -0.71
CLK3-224ENST00000568605 GLP1RP43220 463 aa10.62□□□□□ -0.71
CLK3-224ENST00000568605 PSMD7P51665 324 aa10.62□□□□□ -0.71
CLK3-224ENST00000568605 DLX6P56179 175 aa10.62□□□□□ -0.71
CLK3-224ENST00000568605 FABP5Q01469 135 aa10.62□□□□□ -0.71
CLK3-224ENST00000568605 PAX5Q02548 391 aa10.62□□□□□ -0.71
CLK3-224ENST00000568605 OR52W1Q6IF63 320 aa10.62□□□□□ -0.71
CLK3-224ENST00000568605 TMEM91Q6ZNR0 172 aa10.62□□□□□ -0.71
CLK3-224ENST00000568605 TCF23Q7RTU1 214 aa10.62□□□□□ -0.71
CLK3-224ENST00000568605 LRRTM1Q86UE6 522 aa10.62□□□□□ -0.71
CLK3-224ENST00000568605 COQ2Q96H96 371 aa10.62□□□□□ -0.71
CLK3-224ENST00000568605 MDFIQ99750 246 aa10.62□□□□□ -0.71
CLK3-224ENST00000568605 SELENOIQ9C0D9 397 aa10.62□□□□□ -0.71
CLK3-224ENST00000568605 DPAGT1Q9H3H5 408 aa10.62□□□□□ -0.71
CLK3-224ENST00000568605 NCOR1P1Q9H4R4 102 aa10.62□□□□□ -0.71
CLK3-224ENST00000568605 ESM1Q9NQ30 184 aa10.62□□□□□ -0.71
CLK3-224ENST00000568605 SESN1Q9Y6P5 492 aa10.62□□□□□ -0.71
CLK3-224ENST00000568605 MEIKINA0A087WXM9 373 aa10.61□□□□□ -0.71
CLK3-224ENST00000568605 A0A1W2PP11 408 aa10.61□□□□□ -0.71
CLK3-224ENST00000568605 PDCD5O14737 125 aa10.61□□□□□ -0.71
CLK3-224ENST00000568605 HOXA3O43365 443 aaPredicted RBP10.61□□□□□ -0.71
CLK3-224ENST00000568605 TNFAIP8O95379 198 aa10.61□□□□□ -0.71
CLK3-224ENST00000568605 BPNT1O95861 308 aa10.61□□□□□ -0.71
CLK3-224ENST00000568605 MELTFP08582 738 aa10.61□□□□□ -0.71
CLK3-224ENST00000568605 GLIPR1P48060 266 aa10.61□□□□□ -0.71
CLK3-224ENST00000568605 DLX1P56177 255 aa10.61□□□□□ -0.71
CLK3-224ENST00000568605 SSX1Q16384 188 aa10.61□□□□□ -0.71
CLK3-224ENST00000568605 TAF9Q16594 264 aa10.61□□□□□ -0.71
CLK3-224ENST00000568605 C1orf100Q5SVJ3 147 aa10.61□□□□□ -0.71
CLK3-224ENST00000568605 Q6YL49 198 aa10.61□□□□□ -0.71
CLK3-224ENST00000568605 LYPD6Q86Y78 171 aa10.61□□□□□ -0.71
CLK3-224ENST00000568605 PNKDQ8N490 385 aa10.61□□□□□ -0.71
CLK3-224ENST00000568605 PIP4P2Q8N4L2 257 aa10.61□□□□□ -0.71
CLK3-224ENST00000568605 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP10.61□□□□□ -0.71
CLK3-224ENST00000568605 ZNF565Q8N9K5 539 aa10.61□□□□□ -0.71
CLK3-224ENST00000568605 SUMF2Q8NBJ7 301 aa10.61□□□□□ -0.71
CLK3-224ENST00000568605 SPATA3Q8NHX4 192 aa10.61□□□□□ -0.71
CLK3-224ENST00000568605 CORO2AQ92828 525 aa10.61□□□□□ -0.71
CLK3-224ENST00000568605 C1orf147Q96MC9 270 aaPredicted RBP10.61□□□□□ -0.71
CLK3-224ENST00000568605 CLEC7AQ9BXN2 247 aa10.61□□□□□ -0.71
CLK3-224ENST00000568605 TMEM59Q9BXS4 323 aa10.61□□□□□ -0.71
CLK3-224ENST00000568605 PPIL3Q9H2H8 161 aaKnown RBP10.61□□□□□ -0.71
CLK3-224ENST00000568605 ING3Q9NXR8 418 aa10.61□□□□□ -0.71
CLK3-224ENST00000568605 ZNRD1Q9P1U0 126 aa10.61□□□□□ -0.71
CLK3-224ENST00000568605 TBL2Q9Y4P3 447 aaKnown RBP10.61□□□□□ -0.71
CLK3-224ENST00000568605 TRDV1A0A1B0GX56 115 aa10.6□□□□□ -0.71
CLK3-224ENST00000568605 A0A1W2PRD5 423 aa10.6□□□□□ -0.71
CLK3-224ENST00000568605 A0A1W2PRF3 423 aa10.6□□□□□ -0.71
CLK3-224ENST00000568605 A0A1W2PRM7 423 aa10.6□□□□□ -0.71
CLK3-224ENST00000568605 TMEM30CPA0ZSE6 113 aa10.6□□□□□ -0.71
CLK3-224ENST00000568605 MEX3AA1L020 520 aaKnown RBP10.6□□□□□ -0.71
CLK3-224ENST00000568605 MCRIP1C9JLW8 97 aa10.6□□□□□ -0.71
CLK3-224ENST00000568605 SLC17A2O00624 439 aa10.6□□□□□ -0.71
CLK3-224ENST00000568605 RPL15P61313 204 aaKnown RBP10.6□□□□□ -0.71
CLK3-224ENST00000568605 PRB3Q04118 309 aaPredicted RBP10.6□□□□□ -0.71
CLK3-224ENST00000568605 SLC9A3R2Q15599 337 aa10.6□□□□□ -0.71
CLK3-224ENST00000568605 CD200R1LQ6Q8B3 271 aa10.6□□□□□ -0.71
CLK3-224ENST00000568605 HEPN1Q6WQI6 88 aa10.6□□□□□ -0.71
CLK3-224ENST00000568605 C11orf42Q8N5U0 333 aa10.6□□□□□ -0.71
CLK3-224ENST00000568605 KCNG3Q8TAE7 436 aa10.6□□□□□ -0.71
CLK3-224ENST00000568605 FAM46BQ96A09 425 aa10.6□□□□□ -0.71
CLK3-224ENST00000568605 Q96M66 194 aa10.6□□□□□ -0.71
CLK3-224ENST00000568605 DUX5Q96PT3 197 aa10.6□□□□□ -0.71
CLK3-224ENST00000568605 TMEM133Q9H2Q1 129 aa10.6□□□□□ -0.71
CLK3-224ENST00000568605 BANF2Q9H503 90 aa10.6□□□□□ -0.71
CLK3-224ENST00000568605 RAB9BQ9NP90 201 aa10.6□□□□□ -0.71
CLK3-224ENST00000568605 RCC2Q9P258 522 aaKnown RBP10.6□□□□□ -0.71
CLK3-224ENST00000568605 KIF25Q9UIL4 384 aa10.6□□□□□ -0.71
CLK3-224ENST00000568605 SLC22A1O15245 554 aa10.59□□□□□ -0.71
CLK3-224ENST00000568605 CA11O75493 328 aa10.59□□□□□ -0.71
CLK3-224ENST00000568605 MPIG6BO95866 241 aa10.59□□□□□ -0.71
CLK3-224ENST00000568605 ARG1P05089 322 aa10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms