RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 RBM39Q14498 530 aaKnown RBP11.86□□□□□ -0.51
CLN3-236ENST00000568558 CDK5R1Q15078 307 aa11.86□□□□□ -0.51
CLN3-236ENST00000568558 SMN1Q16637 294 aaKnown RBP11.86□□□□□ -0.51
CLN3-236ENST00000568558 C9orf152Q5JTZ5 239 aa11.86□□□□□ -0.51
CLN3-236ENST00000568558 LINC00482Q8N8I6 264 aa11.86□□□□□ -0.51
CLN3-236ENST00000568558 OR9G1Q8NH87 305 aa11.86□□□□□ -0.51
CLN3-236ENST00000568558 LGALS12Q96DT0 336 aa11.86□□□□□ -0.51
CLN3-236ENST00000568558 PELI1Q96FA3 418 aa11.86□□□□□ -0.51
CLN3-236ENST00000568558 RDH12Q96NR8 316 aa11.86□□□□□ -0.51
CLN3-236ENST00000568558 PPIL3Q9H2H8 161 aaKnown RBP11.86□□□□□ -0.51
CLN3-236ENST00000568558 ZCCHC4Q9H5U6 513 aa11.86□□□□□ -0.51
CLN3-236ENST00000568558 MOB4Q9Y3A3 225 aa11.86□□□□□ -0.51
CLN3-236ENST00000568558 HSPE1-MOB4S4R3N1 261 aa11.86□□□□□ -0.51
CLN3-236ENST00000568558 WI2-2373I1.2A0A1W2PRP0 233 aa11.85□□□□□ -0.51
CLN3-236ENST00000568558 CASQ2O14958 399 aaPredicted RBP11.85□□□□□ -0.51
CLN3-236ENST00000568558 WBP4O75554 376 aaKnown RBP11.85□□□□□ -0.51
CLN3-236ENST00000568558 NFYBP25208 207 aa11.85□□□□□ -0.51
CLN3-236ENST00000568558 OR3A4PP47883 348 aa11.85□□□□□ -0.51
CLN3-236ENST00000568558 ZP1P60852 638 aa11.85□□□□□ -0.51
CLN3-236ENST00000568558 VAX1Q5SQQ9 334 aa11.85□□□□□ -0.51
CLN3-236ENST00000568558 OGFRL1Q5TC84 451 aaPredicted RBP11.85□□□□□ -0.51
CLN3-236ENST00000568558 OSR2Q8N2R0 312 aa11.85□□□□□ -0.51
CLN3-236ENST00000568558 OR51T1Q8NGJ9 327 aa11.85□□□□□ -0.51
CLN3-236ENST00000568558 CYGBQ8WWM9 190 aa11.85□□□□□ -0.51
CLN3-236ENST00000568558 KIRREL1Q96J84 757 aa11.85□□□□□ -0.51
CLN3-236ENST00000568558 OR6C3Q9NZP0 311 aa11.85□□□□□ -0.51
CLN3-236ENST00000568558 EXOGQ9Y2C4 368 aaKnown RBP11.85□□□□□ -0.51
CLN3-236ENST00000568558 MYRFQ9Y2G1 1151 aa11.85□□□□□ -0.51
CLN3-236ENST00000568558 NBEAL2Q6ZNJ1 2754 aa11.84□□□□□ -0.51
CLN3-236ENST00000568558 KBTBD11-OT1A0A1B0GTJ5 212 aa11.84□□□□□ -0.51
CLN3-236ENST00000568558 PSMB11A5LHX3 300 aa11.84□□□□□ -0.51
CLN3-236ENST00000568558 FAM90A18PA6NE21 464 aa11.84□□□□□ -0.51
CLN3-236ENST00000568558 FAM90A16PA6NEW6 464 aa11.84□□□□□ -0.51
CLN3-236ENST00000568558 FAM90A20PA6NIJ5 464 aa11.84□□□□□ -0.51
CLN3-236ENST00000568558 FAM90A9PA6NNJ1 464 aa11.84□□□□□ -0.51
CLN3-236ENST00000568558 FAM90A12PA8MX19 464 aa11.84□□□□□ -0.51
CLN3-236ENST00000568558 FAM90A5PA8MXJ8 464 aa11.84□□□□□ -0.51
CLN3-236ENST00000568558 J3QLW9 94 aa11.84□□□□□ -0.51
CLN3-236ENST00000568558 DEGS1O15121 323 aa11.84□□□□□ -0.51
CLN3-236ENST00000568558 MPZL2O60487 215 aa11.84□□□□□ -0.51
CLN3-236ENST00000568558 FAM90A15PP0C7V4 464 aa11.84□□□□□ -0.51
CLN3-236ENST00000568558 FAM90A13PP0C7W8 464 aa11.84□□□□□ -0.51
CLN3-236ENST00000568558 FAM90A14PP0C7W9 464 aa11.84□□□□□ -0.51
CLN3-236ENST00000568558 FAM90A24PP0C7X0 464 aa11.84□□□□□ -0.51
CLN3-236ENST00000568558 FAM106CPP0CH98 169 aa11.84□□□□□ -0.51
CLN3-236ENST00000568558 CGB3P0DN86 165 aa11.84□□□□□ -0.51
CLN3-236ENST00000568558 CGB7P0DN87 165 aa11.84□□□□□ -0.51
CLN3-236ENST00000568558 ZNF19P17023 458 aa11.84□□□□□ -0.51
CLN3-236ENST00000568558 ADARB1P78563 741 aaKnown RBP11.84□□□□□ -0.51
CLN3-236ENST00000568558 EGFEM1PQ0D2K5 195 aa11.84□□□□□ -0.51
CLN3-236ENST00000568558 ALKBH1Q13686 389 aaKnown RBP11.84□□□□□ -0.51
CLN3-236ENST00000568558 KISS1Q15726 138 aa11.84□□□□□ -0.51
CLN3-236ENST00000568558 ZNF691Q5VV52 312 aa11.84□□□□□ -0.51
CLN3-236ENST00000568558 C11orf87Q6NUJ2 197 aa11.84□□□□□ -0.51
CLN3-236ENST00000568558 ETV3LQ6ZN32 361 aa11.84□□□□□ -0.51
CLN3-236ENST00000568558 THNSL2Q86YJ6 484 aa11.84□□□□□ -0.51
CLN3-236ENST00000568558 ACBD7Q8N6N7 88 aa11.84□□□□□ -0.51
CLN3-236ENST00000568558 PACRGLQ8N7B6 248 aa11.84□□□□□ -0.51
CLN3-236ENST00000568558 ZNF555Q8NEP9 628 aa11.84□□□□□ -0.51
CLN3-236ENST00000568558 CNIH3Q8TBE1 160 aa11.84□□□□□ -0.51
CLN3-236ENST00000568558 TOMM40LQ969M1 308 aa11.84□□□□□ -0.51
CLN3-236ENST00000568558 RPEQ96AT9 228 aa11.84□□□□□ -0.51
CLN3-236ENST00000568558 C4orf36Q96KX1 117 aa11.84□□□□□ -0.51
CLN3-236ENST00000568558 PCDHB16Q9NRJ7 776 aa11.84□□□□□ -0.51
CLN3-236ENST00000568558 AMMECR1Q9Y4X0 333 aaPredicted RBP11.84□□□□□ -0.51
CLN3-236ENST00000568558 A0A1W2PPI3 338 aa11.83□□□□□ -0.52
CLN3-236ENST00000568558 H0YJX3 145 aa11.83□□□□□ -0.52
CLN3-236ENST00000568558 J3QR06 171 aa11.83□□□□□ -0.52
CLN3-236ENST00000568558 SULT1B1O43704 296 aa11.83□□□□□ -0.52
CLN3-236ENST00000568558 SNRNP70P08621 437 aaKnown RBP11.83□□□□□ -0.52
CLN3-236ENST00000568558 HCKP08631 526 aa11.83□□□□□ -0.52
CLN3-236ENST00000568558 GNAO1P09471 354 aa11.83□□□□□ -0.52
CLN3-236ENST00000568558 TMEM225BP0DP42 221 aa11.83□□□□□ -0.52
CLN3-236ENST00000568558 HOXD3P31249 432 aaPredicted RBP11.83□□□□□ -0.52
CLN3-236ENST00000568558 GLP1RP43220 463 aa11.83□□□□□ -0.52
CLN3-236ENST00000568558 MTNR1BP49286 362 aa11.83□□□□□ -0.52
CLN3-236ENST00000568558 LHFPL3Q86UP9 236 aa11.83□□□□□ -0.52
CLN3-236ENST00000568558 MRPL41Q8IXM3 137 aaKnown RBP11.83□□□□□ -0.52
CLN3-236ENST00000568558 ZNF565Q8N9K5 539 aa11.83□□□□□ -0.52
CLN3-236ENST00000568558 OR13A1Q8NGR1 328 aa11.83□□□□□ -0.52
CLN3-236ENST00000568558 OR56B4Q8NH76 319 aa11.83□□□□□ -0.52
CLN3-236ENST00000568558 NRG4Q8WWG1 115 aa11.83□□□□□ -0.52
CLN3-236ENST00000568558 Q96MT0 163 aa11.83□□□□□ -0.52
CLN3-236ENST00000568558 ZNF649Q9BS31 505 aa11.83□□□□□ -0.52
CLN3-236ENST00000568558 NCOR1P1Q9H4R4 102 aa11.83□□□□□ -0.52
CLN3-236ENST00000568558 CALYQ9NYX4 217 aa11.83□□□□□ -0.52
CLN3-236ENST00000568558 KIF25Q9UIL4 384 aa11.83□□□□□ -0.52
CLN3-236ENST00000568558 RYR3Q15413 4870 aa11.82□□□□□ -0.52
CLN3-236ENST00000568558 MEIKINA0A087WXM9 373 aa11.82□□□□□ -0.52
CLN3-236ENST00000568558 TRAV24A0A0B4J272 114 aa11.82□□□□□ -0.52
CLN3-236ENST00000568558 HSPB6O14558 160 aa11.82□□□□□ -0.52
CLN3-236ENST00000568558 IL1AP01583 271 aa11.82□□□□□ -0.52
CLN3-236ENST00000568558 RPL23AP62750 156 aaKnown RBP11.82□□□□□ -0.52
CLN3-236ENST00000568558 PAN3Q58A45 887 aaKnown RBP11.82□□□□□ -0.52
CLN3-236ENST00000568558 DEFB121Q5J5C9 76 aa11.82□□□□□ -0.52
CLN3-236ENST00000568558 ELP2Q6IA86 826 aa11.82□□□□□ -0.52
CLN3-236ENST00000568558 ZNF329Q86UD4 541 aa11.82□□□□□ -0.52
CLN3-236ENST00000568558 SERPINA12Q8IW75 414 aa11.82□□□□□ -0.52
CLN3-236ENST00000568558 PARP16Q8N5Y8 322 aa11.82□□□□□ -0.52
CLN3-236ENST00000568558 C5orf56Q8N8D9 126 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms