RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 PSG7Q13046 419 aa17.24■□□□□ 0.35
CLN3-230ENST00000568076 TUSC1Q2TAM9 212 aa17.24■□□□□ 0.35
CLN3-230ENST00000568076 LDLRAD3Q86YD5 345 aa17.24■□□□□ 0.35
CLN3-230ENST00000568076 CCDC71LQ8N9Z2 235 aa17.24■□□□□ 0.35
CLN3-230ENST00000568076 OR1J1Q8NGS3 322 aa17.24■□□□□ 0.35
CLN3-230ENST00000568076 IFT22Q9H7X7 185 aa17.24■□□□□ 0.35
CLN3-230ENST00000568076 TMA7Q9Y2S6 64 aaKnown RBP17.24■□□□□ 0.35
CLN3-230ENST00000568076 KIR2DS1A0A191URI9 304 aa17.24■□□□□ 0.35
CLN3-230ENST00000568076 LRP5LA4QPB2 252 aa17.24■□□□□ 0.35
CLN3-230ENST00000568076 TM4SF5O14894 197 aa17.24■□□□□ 0.35
CLN3-230ENST00000568076 DIRAS3O95661 229 aa17.24■□□□□ 0.35
CLN3-230ENST00000568076 IGKV3-15P01624 115 aa17.24■□□□□ 0.35
CLN3-230ENST00000568076 MBPP02686 304 aaPredicted RBP17.24■□□□□ 0.35
CLN3-230ENST00000568076 MPV17P39210 176 aa17.24■□□□□ 0.35
CLN3-230ENST00000568076 KIR2DS4P43632 304 aa17.24■□□□□ 0.35
CLN3-230ENST00000568076 KIR2DS1Q14954 304 aa17.24■□□□□ 0.35
CLN3-230ENST00000568076 LGI3Q8N145 548 aa17.24■□□□□ 0.35
CLN3-230ENST00000568076 SECTM1Q8WVN6 248 aa17.24■□□□□ 0.35
CLN3-230ENST00000568076 BOD1Q96IK1 185 aa17.24■□□□□ 0.35
CLN3-230ENST00000568076 ADAT1Q9BUB4 502 aaKnown RBP17.24■□□□□ 0.35
CLN3-230ENST00000568076 NUP50Q9UKX7 468 aa17.24■□□□□ 0.35
CLN3-230ENST00000568076 LSM5Q9Y4Y9 91 aaKnown RBP17.24■□□□□ 0.35
CLN3-230ENST00000568076 TRBV6-6A0A0A6YYG2 114 aa17.23■□□□□ 0.35
CLN3-230ENST00000568076 C3orf85A0A1B0GTC6 90 aa17.23■□□□□ 0.35
CLN3-230ENST00000568076 IQCF6A8MYZ5 107 aa17.23■□□□□ 0.35
CLN3-230ENST00000568076 H0YL77 283 aa17.23■□□□□ 0.35
CLN3-230ENST00000568076 FGF16O43320 207 aa17.23■□□□□ 0.35
CLN3-230ENST00000568076 SLC34A2O95436 690 aa17.23■□□□□ 0.35
CLN3-230ENST00000568076 SCGB1D2O95969 90 aa17.23■□□□□ 0.35
CLN3-230ENST00000568076 HOXB1P14653 301 aaPredicted RBP17.23■□□□□ 0.35
CLN3-230ENST00000568076 ERVK11-1P61568 191 aa17.23■□□□□ 0.35
CLN3-230ENST00000568076 ZNF169Q14929 603 aaPredicted RBP17.23■□□□□ 0.35
CLN3-230ENST00000568076 PCSK4Q6UW60 755 aa17.23■□□□□ 0.35
CLN3-230ENST00000568076 ZNF818PQ6ZRF7 136 aa17.23■□□□□ 0.35
CLN3-230ENST00000568076 TMED6Q8WW62 240 aa17.23■□□□□ 0.35
CLN3-230ENST00000568076 DNTTIP1Q9H147 329 aa17.23■□□□□ 0.35
CLN3-230ENST00000568076 RIMS4Q9H426 269 aaPredicted RBP17.23■□□□□ 0.35
CLN3-230ENST00000568076 ARID1AO14497 2285 aa17.23■□□□□ 0.35
CLN3-230ENST00000568076 IGHV3-64DA0A0J9YX35 117 aa17.22■□□□□ 0.35
CLN3-230ENST00000568076 RCC1P18754 421 aaPredicted RBP17.22■□□□□ 0.35
CLN3-230ENST00000568076 ZNF154Q13106 437 aa17.22■□□□□ 0.35
CLN3-230ENST00000568076 RTP5Q14D33 572 aa17.22■□□□□ 0.35
CLN3-230ENST00000568076 ZNF880Q6PDB4 577 aa17.22■□□□□ 0.35
CLN3-230ENST00000568076 ZADH2Q8N4Q0 377 aa17.22■□□□□ 0.35
CLN3-230ENST00000568076 OR52M1Q8NGK5 317 aa17.22■□□□□ 0.35
CLN3-230ENST00000568076 PRRX2Q99811 253 aa17.22■□□□□ 0.35
CLN3-230ENST00000568076 PLSCR4Q9NRQ2 329 aa17.22■□□□□ 0.35
CLN3-230ENST00000568076 A0A1B0GW55 424 aa17.22■□□□□ 0.35
CLN3-230ENST00000568076 AHRRA9YTQ3 701 aa17.22■□□□□ 0.35
CLN3-230ENST00000568076 KRBOX1C9JBD0 128 aa17.22■□□□□ 0.35
CLN3-230ENST00000568076 DEGS1O15121 323 aa17.22■□□□□ 0.35
CLN3-230ENST00000568076 TNFSF13O75888 250 aa17.22■□□□□ 0.35
CLN3-230ENST00000568076 GLAP06280 429 aa17.22■□□□□ 0.35
CLN3-230ENST00000568076 DUX4L2P0CJ85 424 aa17.22■□□□□ 0.35
CLN3-230ENST00000568076 DUX4L3P0CJ86 424 aa17.22■□□□□ 0.35
CLN3-230ENST00000568076 DUX4L4P0CJ87 422 aa17.22■□□□□ 0.35
CLN3-230ENST00000568076 DUX4L5P0CJ88 424 aa17.22■□□□□ 0.35
CLN3-230ENST00000568076 DUX4L6P0CJ89 424 aa17.22■□□□□ 0.35
CLN3-230ENST00000568076 DUX4L7P0CJ90 424 aa17.22■□□□□ 0.35
CLN3-230ENST00000568076 ZNF44P15621 663 aa17.22■□□□□ 0.35
CLN3-230ENST00000568076 RPL12P30050 165 aaKnown RBP17.22■□□□□ 0.35
CLN3-230ENST00000568076 FAM209AQ5JX71 171 aa17.22■□□□□ 0.35
CLN3-230ENST00000568076 SEM1Q6ZVN7 128 aa17.22■□□□□ 0.35
CLN3-230ENST00000568076 TBC1D26Q86UD7 250 aa17.22■□□□□ 0.35
CLN3-230ENST00000568076 STPG2Q8N412 459 aa17.22■□□□□ 0.35
CLN3-230ENST00000568076 SLC35G3Q8N808 338 aa17.22■□□□□ 0.35
CLN3-230ENST00000568076 C1orf162Q8NEQ5 155 aaPredicted RBP17.22■□□□□ 0.35
CLN3-230ENST00000568076 KLF14Q8TD94 323 aaPredicted RBP17.22■□□□□ 0.35
CLN3-230ENST00000568076 GPHA2Q96T91 129 aa17.22■□□□□ 0.35
CLN3-230ENST00000568076 RHOFQ9HBH0 211 aa17.22■□□□□ 0.35
CLN3-230ENST00000568076 OR2S2Q9NQN1 319 aa17.22■□□□□ 0.35
CLN3-230ENST00000568076 TMEM100Q9NV29 134 aa17.22■□□□□ 0.35
CLN3-230ENST00000568076 DUX4Q9UBX2 424 aa17.22■□□□□ 0.35
CLN3-230ENST00000568076 K7EPK0 472 aa17.21■□□□□ 0.35
CLN3-230ENST00000568076 CDIPTO14735 213 aa17.21■□□□□ 0.35
CLN3-230ENST00000568076 SELEP16581 610 aa17.21■□□□□ 0.35
CLN3-230ENST00000568076 RPL7L1Q6DKI1 246 aaKnown RBP17.21■□□□□ 0.35
CLN3-230ENST00000568076 MEX3BQ6ZN04 569 aaKnown RBP17.21■□□□□ 0.35
CLN3-230ENST00000568076 FAM185AQ8N0U4 392 aa17.21■□□□□ 0.35
CLN3-230ENST00000568076 GAPTQ8N292 157 aa17.21■□□□□ 0.35
CLN3-230ENST00000568076 FAM71E2Q8N5Q1 922 aa17.21■□□□□ 0.35
CLN3-230ENST00000568076 USB1Q9BQ65 265 aaKnown RBP17.21■□□□□ 0.35
CLN3-230ENST00000568076 NRIP2Q9BQI9 281 aa17.21■□□□□ 0.35
CLN3-230ENST00000568076 AMDHD2Q9Y303 409 aa17.21■□□□□ 0.35
CLN3-230ENST00000568076 CACNA1GO43497 2377 aa17.21■□□□□ 0.35
CLN3-230ENST00000568076 ZSCAN5BA6NJL1 495 aa17.2■□□□□ 0.34
CLN3-230ENST00000568076 WDR1O75083 606 aa17.2■□□□□ 0.34
CLN3-230ENST00000568076 CGAP01215 116 aa17.2■□□□□ 0.34
CLN3-230ENST00000568076 CTXN2P0C2S0 81 aa17.2■□□□□ 0.34
CLN3-230ENST00000568076 RND3P61587 244 aa17.2■□□□□ 0.34
CLN3-230ENST00000568076 SMCO1Q147U7 214 aa17.2■□□□□ 0.34
CLN3-230ENST00000568076 SPIN3Q5JUX0 258 aa17.2■□□□□ 0.34
CLN3-230ENST00000568076 C1QTNF12Q5T7M4 302 aa17.2■□□□□ 0.34
CLN3-230ENST00000568076 TMEM268Q5VZI3 342 aa17.2■□□□□ 0.34
CLN3-230ENST00000568076 CXorf67Q86X51 503 aaPredicted RBP17.2■□□□□ 0.34
CLN3-230ENST00000568076 ZNF610Q8N9Z0 462 aa17.2■□□□□ 0.34
CLN3-230ENST00000568076 OR1S2Q8NGQ3 325 aa17.2■□□□□ 0.34
CLN3-230ENST00000568076 STARD4Q96DR4 205 aa17.2■□□□□ 0.34
CLN3-230ENST00000568076 TMEM222Q9H0R3 208 aa17.2■□□□□ 0.34
CLN3-230ENST00000568076 OPN3Q9H1Y3 402 aaPredicted RBP17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms