RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 OR52N1Q8NH53 320 aa16.69■□□□□ 0.26
CLN3-219ENST00000565778 S100A13Q99584 98 aa16.69■□□□□ 0.26
CLN3-219ENST00000565778 METTL9Q9H1A3 318 aa16.69■□□□□ 0.26
CLN3-219ENST00000565778 HSPE1-MOB4S4R3N1 261 aa16.69■□□□□ 0.26
CLN3-219ENST00000565778 DSCAML1Q8TD84 2053 aa16.69■□□□□ 0.26
CLN3-219ENST00000565778 MEGF8Q7Z7M0 2845 aa16.68■□□□□ 0.26
CLN3-219ENST00000565778 MEIKINA0A087WXM9 373 aa16.68■□□□□ 0.26
CLN3-219ENST00000565778 TRAV24A0A0B4J272 114 aa16.68■□□□□ 0.26
CLN3-219ENST00000565778 LEUTXA8MZ59 168 aa16.68■□□□□ 0.26
CLN3-219ENST00000565778 CSTBP04080 98 aaKnown RBP16.68■□□□□ 0.26
CLN3-219ENST00000565778 NFYBP25208 207 aa16.68■□□□□ 0.26
CLN3-219ENST00000565778 C21orf33P30042 268 aaPredicted RBP16.68■□□□□ 0.26
CLN3-219ENST00000565778 BDKRB2P30411 391 aa16.68■□□□□ 0.26
CLN3-219ENST00000565778 CAPGP40121 348 aa16.68■□□□□ 0.26
CLN3-219ENST00000565778 BDH1Q02338 343 aa16.68■□□□□ 0.26
CLN3-219ENST00000565778 HABP2Q14520 560 aaPredicted RBP16.68■□□□□ 0.26
CLN3-219ENST00000565778 IL13RA2Q14627 380 aa16.68■□□□□ 0.26
CLN3-219ENST00000565778 PIGYQ3MUY2 71 aa16.68■□□□□ 0.26
CLN3-219ENST00000565778 ARSJQ5FYB0 599 aaPredicted RBP16.68■□□□□ 0.26
CLN3-219ENST00000565778 DDI2Q5TDH0 399 aa16.68■□□□□ 0.26
CLN3-219ENST00000565778 ASCL4Q6XD76 172 aa16.68■□□□□ 0.26
CLN3-219ENST00000565778 C8orf59Q8N0T1 100 aaPredicted RBP16.68■□□□□ 0.26
CLN3-219ENST00000565778 ZFP41Q8N8Y5 198 aa16.68■□□□□ 0.26
CLN3-219ENST00000565778 OR13C5Q8NGS8 318 aa16.68■□□□□ 0.26
CLN3-219ENST00000565778 ORAI1Q96D31 301 aa16.68■□□□□ 0.26
CLN3-219ENST00000565778 ZNF702PQ9H963 129 aa16.68■□□□□ 0.26
CLN3-219ENST00000565778 KIF25Q9UIL4 384 aa16.68■□□□□ 0.26
CLN3-219ENST00000565778 KBTBD11-OT1A0A1B0GTJ5 212 aa16.67■□□□□ 0.26
CLN3-219ENST00000565778 EFCAB10A6NFE3 127 aa16.67■□□□□ 0.26
CLN3-219ENST00000565778 PEX14O75381 377 aa16.67■□□□□ 0.26
CLN3-219ENST00000565778 BRS3P32247 399 aa16.67■□□□□ 0.26
CLN3-219ENST00000565778 CEACAM3P40198 252 aa16.67■□□□□ 0.26
CLN3-219ENST00000565778 C17orf58Q2M2W7 97 aa16.67■□□□□ 0.26
CLN3-219ENST00000565778 HIST2H2BDQ6DRA6 164 aa16.67■□□□□ 0.26
CLN3-219ENST00000565778 DMKNQ6E0U4 476 aaPredicted RBP16.67■□□□□ 0.26
CLN3-219ENST00000565778 OSR2Q8N2R0 312 aa16.67■□□□□ 0.26
CLN3-219ENST00000565778 Q8NFD4 153 aa16.67■□□□□ 0.26
CLN3-219ENST00000565778 CREB3L1Q96BA8 519 aa16.67■□□□□ 0.26
CLN3-219ENST00000565778 ZNF286AQ9HBT8 521 aa16.67■□□□□ 0.26
CLN3-219ENST00000565778 ST3GAL6Q9Y274 331 aa16.67■□□□□ 0.26
CLN3-219ENST00000565778 FAM90A22PA8MWA6 464 aa16.66■□□□□ 0.26
CLN3-219ENST00000565778 ANKRD65E5RJM6 399 aa16.66■□□□□ 0.26
CLN3-219ENST00000565778 IGLV1-47P01700 117 aa16.66■□□□□ 0.26
CLN3-219ENST00000565778 GNAO1P09471 354 aa16.66■□□□□ 0.26
CLN3-219ENST00000565778 CD24P25063 80 aa16.66■□□□□ 0.26
CLN3-219ENST00000565778 CD34P28906 385 aa16.66■□□□□ 0.26
CLN3-219ENST00000565778 GLP1RP43220 463 aa16.66■□□□□ 0.26
CLN3-219ENST00000565778 ARHGDIBP52566 201 aa16.66■□□□□ 0.26
CLN3-219ENST00000565778 BLCAPP62952 87 aa16.66■□□□□ 0.26
CLN3-219ENST00000565778 RIPK1Q13546 671 aa16.66■□□□□ 0.26
CLN3-219ENST00000565778 RBM39Q14498 530 aaKnown RBP16.66■□□□□ 0.26
CLN3-219ENST00000565778 YIF1BQ5BJH7 314 aa16.66■□□□□ 0.26
CLN3-219ENST00000565778 Q8N2B8 174 aa16.66■□□□□ 0.26
CLN3-219ENST00000565778 PCDHB16Q9NRJ7 776 aa16.66■□□□□ 0.26
CLN3-219ENST00000565778 SERTAD4Q9NUC0 356 aa16.66■□□□□ 0.26
CLN3-219ENST00000565778 PAK1IP1Q9NWT1 392 aaPredicted RBP16.66■□□□□ 0.26
CLN3-219ENST00000565778 CKLFQ9UBR5 152 aa16.66■□□□□ 0.26
CLN3-219ENST00000565778 TRBV5-5A0A0J9YX44 114 aa16.65■□□□□ 0.26
CLN3-219ENST00000565778 PNMA8CA0A1B0GUJ8 204 aa16.65■□□□□ 0.26
CLN3-219ENST00000565778 BUB1B-PAK6H3BSN5 160 aa16.65■□□□□ 0.26
CLN3-219ENST00000565778 XPNPEP2O43895 674 aa16.65■□□□□ 0.26
CLN3-219ENST00000565778 CGB3P0DN86 165 aa16.65■□□□□ 0.26
CLN3-219ENST00000565778 CGB7P0DN87 165 aa16.65■□□□□ 0.26
CLN3-219ENST00000565778 Q499Y3 187 aa16.65■□□□□ 0.26
CLN3-219ENST00000565778 OGFRL1Q5TC84 451 aaPredicted RBP16.65■□□□□ 0.26
CLN3-219ENST00000565778 STX19Q8N4C7 294 aa16.65■□□□□ 0.26
CLN3-219ENST00000565778 BPIFB6Q8NFQ5 453 aa16.65■□□□□ 0.26
CLN3-219ENST00000565778 OR13A1Q8NGR1 328 aa16.65■□□□□ 0.26
CLN3-219ENST00000565778 CFHR4Q92496 578 aa16.65■□□□□ 0.26
CLN3-219ENST00000565778 OR5M11Q96RB7 305 aa16.65■□□□□ 0.26
CLN3-219ENST00000565778 ZNF184Q99676 751 aaPredicted RBP16.65■□□□□ 0.26
CLN3-219ENST00000565778 NCOR1P1Q9H4R4 102 aa16.65■□□□□ 0.26
CLN3-219ENST00000565778 CALYQ9NYX4 217 aa16.65■□□□□ 0.26
CLN3-219ENST00000565778 CNOT2Q9NZN8 540 aaKnown RBP16.65■□□□□ 0.26
CLN3-219ENST00000565778 A0A1W2PPK0 400 aa16.64■□□□□ 0.25
CLN3-219ENST00000565778 OR7C1O76099 320 aaPredicted RBP16.64■□□□□ 0.25
CLN3-219ENST00000565778 IGFBP3P17936 291 aaPredicted RBP16.64■□□□□ 0.25
CLN3-219ENST00000565778 SERPINA2P20848 420 aa16.64■□□□□ 0.25
CLN3-219ENST00000565778 KCNJ3P48549 501 aa16.64■□□□□ 0.25
CLN3-219ENST00000565778 TAS2R43P59537 309 aa16.64■□□□□ 0.25
CLN3-219ENST00000565778 HLA-DRB5Q30154 266 aa16.64■□□□□ 0.25
CLN3-219ENST00000565778 SUMF2Q8NBJ7 301 aa16.64■□□□□ 0.25
CLN3-219ENST00000565778 ZNF485Q8NCK3 441 aa16.64■□□□□ 0.25
CLN3-219ENST00000565778 RFESDQ8TAC1 157 aa16.64■□□□□ 0.25
CLN3-219ENST00000565778 PLPPR1Q8TBJ4 325 aa16.64■□□□□ 0.25
CLN3-219ENST00000565778 MRGPRDQ8TDS7 321 aa16.64■□□□□ 0.25
CLN3-219ENST00000565778 CAPSLQ8WWF8 208 aa16.64■□□□□ 0.25
CLN3-219ENST00000565778 KIRREL1Q96J84 757 aa16.64■□□□□ 0.25
CLN3-219ENST00000565778 DPCDQ9BVM2 203 aaPredicted RBP16.64■□□□□ 0.25
CLN3-219ENST00000565778 VCXQ9H320 206 aa16.64■□□□□ 0.25
CLN3-219ENST00000565778 IDI2-AS1Q9NZ38 188 aa16.64■□□□□ 0.25
CLN3-219ENST00000565778 IL36GQ9NZH8 169 aa16.64■□□□□ 0.25
CLN3-219ENST00000565778 PSORS1C1Q9UIG5 152 aa16.64■□□□□ 0.25
CLN3-219ENST00000565778 KIAA2026Q5HYC2 2103 aa16.64■□□□□ 0.25
CLN3-219ENST00000565778 A0A087X0M5 115 aa16.63■□□□□ 0.25
CLN3-219ENST00000565778 A0A1B0GX30 115 aa16.63■□□□□ 0.25
CLN3-219ENST00000565778 CASQ2O14958 399 aaPredicted RBP16.63■□□□□ 0.25
CLN3-219ENST00000565778 ZNF780AO75290 641 aaPredicted RBP16.63■□□□□ 0.25
CLN3-219ENST00000565778 GPX5O75715 221 aa16.63■□□□□ 0.25
CLN3-219ENST00000565778 IGHV3-7P01780 117 aa16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms