RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 ALDH3A2P51648 485 aa13.62□□□□□ -0.23
CLN3-216ENST00000565316 PAX5Q02548 391 aa13.62□□□□□ -0.23
CLN3-216ENST00000565316 ATXN7L3Q14CW9 347 aaPredicted RBP13.62□□□□□ -0.23
CLN3-216ENST00000565316 LHFPL3Q86UP9 236 aa13.62□□□□□ -0.23
CLN3-216ENST00000565316 THNSL2Q86YJ6 484 aa13.62□□□□□ -0.23
CLN3-216ENST00000565316 SERPINA12Q8IW75 414 aa13.62□□□□□ -0.23
CLN3-216ENST00000565316 OR4X2Q8NGF9 303 aa13.62□□□□□ -0.23
CLN3-216ENST00000565316 OR9G1Q8NH87 305 aa13.62□□□□□ -0.23
CLN3-216ENST00000565316 KIRREL1Q96J84 757 aa13.62□□□□□ -0.23
CLN3-216ENST00000565316 ALG8Q9BVK2 526 aa13.62□□□□□ -0.23
CLN3-216ENST00000565316 ISG20L2Q9H9L3 353 aaKnown RBP13.62□□□□□ -0.23
CLN3-216ENST00000565316 TRAV24A0A0B4J272 114 aa13.61□□□□□ -0.23
CLN3-216ENST00000565316 SH2D7A6NKC9 451 aaPredicted RBP13.61□□□□□ -0.23
CLN3-216ENST00000565316 TMEM212A6NML5 194 aa13.61□□□□□ -0.23
CLN3-216ENST00000565316 H3BNX3 289 aa13.61□□□□□ -0.23
CLN3-216ENST00000565316 HCKP08631 526 aa13.61□□□□□ -0.23
CLN3-216ENST00000565316 MNDAP41218 407 aa13.61□□□□□ -0.23
CLN3-216ENST00000565316 OR3A4PP47883 348 aa13.61□□□□□ -0.23
CLN3-216ENST00000565316 SLC35A2P78381 396 aa13.61□□□□□ -0.23
CLN3-216ENST00000565316 MRPL28Q13084 256 aaKnown RBP13.61□□□□□ -0.23
CLN3-216ENST00000565316 ZIK1Q3SY52 487 aaPredicted RBP13.61□□□□□ -0.23
CLN3-216ENST00000565316 ZNF691Q5VV52 312 aa13.61□□□□□ -0.23
CLN3-216ENST00000565316 ZNF529Q6P280 563 aa13.61□□□□□ -0.23
CLN3-216ENST00000565316 C10orf99Q6UWK7 81 aa13.61□□□□□ -0.23
CLN3-216ENST00000565316 ZNF565Q8N9K5 539 aa13.61□□□□□ -0.23
CLN3-216ENST00000565316 Q8NFD4 153 aa13.61□□□□□ -0.23
CLN3-216ENST00000565316 PXT1Q8NFP0 134 aa13.61□□□□□ -0.23
CLN3-216ENST00000565316 RCC1LQ96I51 464 aaKnown RBP13.61□□□□□ -0.23
CLN3-216ENST00000565316 PCDHB16Q9NRJ7 776 aa13.61□□□□□ -0.23
CLN3-216ENST00000565316 AASSQ9UDR5 926 aa13.61□□□□□ -0.23
CLN3-216ENST00000565316 TENM3Q9P273 2699 aa13.6□□□□□ -0.23
CLN3-216ENST00000565316 E9PI62 339 aa13.6□□□□□ -0.23
CLN3-216ENST00000565316 PF4P02776 101 aa13.6□□□□□ -0.23
CLN3-216ENST00000565316 FAM106CPP0CH98 169 aa13.6□□□□□ -0.23
CLN3-216ENST00000565316 OSR2Q8N2R0 312 aa13.6□□□□□ -0.23
CLN3-216ENST00000565316 OR13A1Q8NGR1 328 aa13.6□□□□□ -0.23
CLN3-216ENST00000565316 RHOXF1Q8NHV9 184 aa13.6□□□□□ -0.23
CLN3-216ENST00000565316 CNIH3Q8TBE1 160 aa13.6□□□□□ -0.23
CLN3-216ENST00000565316 INPP5EQ9NRR6 644 aa13.6□□□□□ -0.23
CLN3-216ENST00000565316 ERVK13-1Q9NX77 482 aa13.6□□□□□ -0.23
CLN3-216ENST00000565316 ING3Q9NXR8 418 aa13.6□□□□□ -0.23
CLN3-216ENST00000565316 CALYQ9NYX4 217 aa13.6□□□□□ -0.23
CLN3-216ENST00000565316 KIF25Q9UIL4 384 aa13.6□□□□□ -0.23
CLN3-216ENST00000565316 MOB4Q9Y3A3 225 aa13.6□□□□□ -0.23
CLN3-216ENST00000565316 HSPE1-MOB4S4R3N1 261 aa13.6□□□□□ -0.23
CLN3-216ENST00000565316 NPIPB11E5RHQ5 1161 aa13.59□□□□□ -0.23
CLN3-216ENST00000565316 H0YJX3 145 aa13.59□□□□□ -0.23
CLN3-216ENST00000565316 J3QR06 171 aa13.59□□□□□ -0.23
CLN3-216ENST00000565316 K7EIL1 84 aa13.59□□□□□ -0.23
CLN3-216ENST00000565316 FADS2O95864 444 aaKnown RBP13.59□□□□□ -0.23
CLN3-216ENST00000565316 IL1AP01583 271 aa13.59□□□□□ -0.23
CLN3-216ENST00000565316 NFYBP25208 207 aa13.59□□□□□ -0.23
CLN3-216ENST00000565316 RBM39Q14498 530 aaKnown RBP13.59□□□□□ -0.23
CLN3-216ENST00000565316 IL13RA2Q14627 380 aa13.59□□□□□ -0.23
CLN3-216ENST00000565316 PAN3Q58A45 887 aaKnown RBP13.59□□□□□ -0.23
CLN3-216ENST00000565316 ASCL4Q6XD76 172 aa13.59□□□□□ -0.23
CLN3-216ENST00000565316 CBR4Q8N4T8 237 aa13.59□□□□□ -0.23
CLN3-216ENST00000565316 OR5AK2Q8NH90 309 aa13.59□□□□□ -0.23
CLN3-216ENST00000565316 PDCD1LG2Q9BQ51 273 aa13.59□□□□□ -0.23
CLN3-216ENST00000565316 DHDHQ9UQ10 334 aa13.59□□□□□ -0.23
CLN3-216ENST00000565316 AMMECR1Q9Y4X0 333 aaPredicted RBP13.59□□□□□ -0.23
CLN3-216ENST00000565316 GMPPBQ9Y5P6 360 aa13.59□□□□□ -0.23
CLN3-216ENST00000565316 DNAH9Q9NYC9 4486 aa13.58□□□□□ -0.24
CLN3-216ENST00000565316 MEIKINA0A087WXM9 373 aa13.58□□□□□ -0.24
CLN3-216ENST00000565316 DUS4LO95620 317 aaKnown RBP13.58□□□□□ -0.24
CLN3-216ENST00000565316 MPIG6BO95866 241 aa13.58□□□□□ -0.24
CLN3-216ENST00000565316 CCDC159P0C7I6 412 aa13.58□□□□□ -0.24
CLN3-216ENST00000565316 C21orf33P30042 268 aaPredicted RBP13.58□□□□□ -0.24
CLN3-216ENST00000565316 GLP1RP43220 463 aa13.58□□□□□ -0.24
CLN3-216ENST00000565316 KCNJ3P48549 501 aa13.58□□□□□ -0.24
CLN3-216ENST00000565316 RAB40BQ12829 278 aa13.58□□□□□ -0.24
CLN3-216ENST00000565316 RSBN1Q5VWQ0 802 aaPredicted RBP13.58□□□□□ -0.24
CLN3-216ENST00000565316 ZFP1Q6P2D0 407 aa13.58□□□□□ -0.24
CLN3-216ENST00000565316 SLC16A12Q6ZSM3 486 aa13.58□□□□□ -0.24
CLN3-216ENST00000565316 TOMM40LQ969M1 308 aa13.58□□□□□ -0.24
CLN3-216ENST00000565316 RPEQ96AT9 228 aa13.58□□□□□ -0.24
CLN3-216ENST00000565316 CPNE2Q96FN4 548 aaPredicted RBP13.58□□□□□ -0.24
CLN3-216ENST00000565316 Q96MT0 163 aa13.58□□□□□ -0.24
CLN3-216ENST00000565316 BARHL1Q9BZE3 327 aa13.58□□□□□ -0.24
CLN3-216ENST00000565316 MRPS18AQ9NVS2 196 aaKnown RBP13.58□□□□□ -0.24
CLN3-216ENST00000565316 IDI2-AS1Q9NZ38 188 aa13.58□□□□□ -0.24
CLN3-216ENST00000565316 PSG11Q9UQ72 335 aa13.58□□□□□ -0.24
CLN3-216ENST00000565316 A0A1W2PPI3 338 aa13.57□□□□□ -0.24
CLN3-216ENST00000565316 GABRPO00591 440 aa13.57□□□□□ -0.24
CLN3-216ENST00000565316 MPZL2O60487 215 aa13.57□□□□□ -0.24
CLN3-216ENST00000565316 SNRNP70P08621 437 aaKnown RBP13.57□□□□□ -0.24
CLN3-216ENST00000565316 RAB3AP20336 220 aa13.57□□□□□ -0.24
CLN3-216ENST00000565316 KRTAP10-11P60412 298 aa13.57□□□□□ -0.24
CLN3-216ENST00000565316 EGFEM1PQ0D2K5 195 aa13.57□□□□□ -0.24
CLN3-216ENST00000565316 ZSCAN26Q16670 478 aa13.57□□□□□ -0.24
CLN3-216ENST00000565316 C9orf152Q5JTZ5 239 aa13.57□□□□□ -0.24
CLN3-216ENST00000565316 DRAM1Q8N682 238 aa13.57□□□□□ -0.24
CLN3-216ENST00000565316 LINC00482Q8N8I6 264 aa13.57□□□□□ -0.24
CLN3-216ENST00000565316 OR10A7Q8NGE5 316 aa13.57□□□□□ -0.24
CLN3-216ENST00000565316 HAVCR2Q8TDQ0 301 aa13.57□□□□□ -0.24
CLN3-216ENST00000565316 NR1H4Q96RI1 486 aaPredicted RBP13.57□□□□□ -0.24
CLN3-216ENST00000565316 AMBNQ9NP70 447 aa13.57□□□□□ -0.24
CLN3-216ENST00000565316 KMT2CQ8NEZ4 4911 aaKnown RBP13.57□□□□□ -0.24
CLN3-216ENST00000565316 PSMB11A5LHX3 300 aa13.56□□□□□ -0.24
CLN3-216ENST00000565316 HSPB6O14558 160 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms