RNA–Protein interactions for RNA: ENST00000564353.5

CLK3-215, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,847 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-215ENST00000564353 SSX2Q16385 188 aa11.6□□□□□ -0.55
CLK3-215ENST00000564353 CXorf66Q5JRM2 361 aaPredicted RBP11.6□□□□□ -0.55
CLK3-215ENST00000564353 BTNL8Q6UX41 500 aa11.6□□□□□ -0.55
CLK3-215ENST00000564353 NTNG2Q96CW9 530 aa11.6□□□□□ -0.55
CLK3-215ENST00000564353 SF3B5Q9BWJ5 86 aaKnown RBP11.6□□□□□ -0.55
CLK3-215ENST00000564353 SEC11CQ9BY50 192 aa11.6□□□□□ -0.55
CLK3-215ENST00000564353 FOXJ2Q9P0K8 574 aa11.6□□□□□ -0.55
CLK3-215ENST00000564353 TUBD1Q9UJT1 453 aa11.6□□□□□ -0.55
CLK3-215ENST00000564353 DOCK10Q96BY6 2186 aa11.6□□□□□ -0.55
CLK3-215ENST00000564353 PCSK5Q92824 1860 aa11.59□□□□□ -0.55
CLK3-215ENST00000564353 ZNF816-ZNF321PA0A0X1KG74 233 aa11.59□□□□□ -0.55
CLK3-215ENST00000564353 RRP8O43159 456 aaKnown RBP11.59□□□□□ -0.55
CLK3-215ENST00000564353 COX5BP10606 129 aa11.59□□□□□ -0.55
CLK3-215ENST00000564353 PPP1CCP36873 323 aaKnown RBP11.59□□□□□ -0.55
CLK3-215ENST00000564353 GLP1RP43220 463 aa11.59□□□□□ -0.55
CLK3-215ENST00000564353 FUT6P51993 359 aa11.59□□□□□ -0.55
CLK3-215ENST00000564353 PRDX4Q13162 271 aa11.59□□□□□ -0.55
CLK3-215ENST00000564353 IL34Q6ZMJ4 242 aa11.59□□□□□ -0.55
CLK3-215ENST00000564353 LIAT1Q6ZQX7 453 aa11.59□□□□□ -0.55
CLK3-215ENST00000564353 FAM213BQ8TBF2 198 aa11.59□□□□□ -0.55
CLK3-215ENST00000564353 CD300LFQ8TDQ1 290 aa11.59□□□□□ -0.55
CLK3-215ENST00000564353 IL1F10Q8WWZ1 152 aa11.59□□□□□ -0.55
CLK3-215ENST00000564353 PSMF1Q92530 271 aa11.59□□□□□ -0.55
CLK3-215ENST00000564353 UBE2J1Q9Y385 318 aaPredicted RBP11.59□□□□□ -0.55
CLK3-215ENST00000564353 SMG1Q96Q15 3661 aaKnown RBP11.59□□□□□ -0.55
CLK3-215ENST00000564353 ZNF732B4DXR9 585 aa11.59□□□□□ -0.55
CLK3-215ENST00000564353 JTBO76095 146 aa11.59□□□□□ -0.55
CLK3-215ENST00000564353 MMP7P09237 267 aaPredicted RBP11.59□□□□□ -0.55
CLK3-215ENST00000564353 JMJD7P0C870 316 aa11.59□□□□□ -0.55
CLK3-215ENST00000564353 SELEP16581 610 aa11.59□□□□□ -0.55
CLK3-215ENST00000564353 PEA15Q15121 130 aa11.59□□□□□ -0.55
CLK3-215ENST00000564353 ZNF818PQ6ZRF7 136 aa11.59□□□□□ -0.55
CLK3-215ENST00000564353 RAB11FIP2Q7L804 512 aa11.59□□□□□ -0.55
CLK3-215ENST00000564353 GAPTQ8N292 157 aa11.59□□□□□ -0.55
CLK3-215ENST00000564353 ZFP62Q8NB50 900 aaPredicted RBP11.59□□□□□ -0.55
CLK3-215ENST00000564353 POM121Q96HA1 1249 aa11.59□□□□□ -0.55
CLK3-215ENST00000564353 CARHSP1Q9Y2V2 147 aaKnown RBP11.59□□□□□ -0.55
CLK3-215ENST00000564353 STARD10Q9Y365 291 aa11.59□□□□□ -0.55
CLK3-215ENST00000564353 DCHS1Q96JQ0 3298 aa11.59□□□□□ -0.55
CLK3-215ENST00000564353 ARG1P05089 322 aa11.59□□□□□ -0.55
CLK3-215ENST00000564353 SMIM6P0DI80 62 aa11.59□□□□□ -0.55
CLK3-215ENST00000564353 TDGF1P13385 188 aa11.59□□□□□ -0.55
CLK3-215ENST00000564353 FUT3P21217 361 aa11.59□□□□□ -0.55
CLK3-215ENST00000564353 GNRHRP30968 328 aa11.59□□□□□ -0.55
CLK3-215ENST00000564353 PLA2G5P39877 138 aa11.59□□□□□ -0.55
CLK3-215ENST00000564353 DEFA6Q01524 100 aa11.59□□□□□ -0.55
CLK3-215ENST00000564353 ARL6IP1Q15041 203 aa11.59□□□□□ -0.55
CLK3-215ENST00000564353 ZNF528Q3MIS6 628 aa11.59□□□□□ -0.55
CLK3-215ENST00000564353 ATP1A1-AS1Q5TC04 95 aa11.59□□□□□ -0.55
CLK3-215ENST00000564353 EIF5AL1Q6IS14 154 aaKnown RBP11.59□□□□□ -0.55
CLK3-215ENST00000564353 FAM180AQ6UWF9 173 aa11.59□□□□□ -0.55
CLK3-215ENST00000564353 C6orf15Q6UXA7 325 aaPredicted RBP11.59□□□□□ -0.55
CLK3-215ENST00000564353 TBC1D26Q86UD7 250 aa11.59□□□□□ -0.55
CLK3-215ENST00000564353 HPSE2Q8WWQ2 592 aa11.59□□□□□ -0.55
CLK3-215ENST00000564353 RARRES2Q99969 163 aa11.59□□□□□ -0.55
CLK3-215ENST00000564353 SPACA1Q9HBV2 294 aa11.59□□□□□ -0.55
CLK3-215ENST00000564353 NDRG3Q9UGV2 375 aa11.59□□□□□ -0.55
CLK3-215ENST00000564353 MED13Q9UHV7 2174 aa11.58□□□□□ -0.56
CLK3-215ENST00000564353 C3orf85A0A1B0GTC6 90 aa11.58□□□□□ -0.56
CLK3-215ENST00000564353 FOXO1Q12778 655 aa11.58□□□□□ -0.56
CLK3-215ENST00000564353 KRBOX4Q5JUW0 171 aa11.58□□□□□ -0.56
CLK3-215ENST00000564353 TMEM42Q69YG0 159 aa11.58□□□□□ -0.56
CLK3-215ENST00000564353 C20orf204Q6ZNR8 217 aa11.58□□□□□ -0.56
CLK3-215ENST00000564353 P4HA3Q7Z4N8 544 aa11.58□□□□□ -0.56
CLK3-215ENST00000564353 CCL28Q9NRJ3 127 aa11.58□□□□□ -0.56
CLK3-215ENST00000564353 ZFP57Q9NU63 452 aa11.58□□□□□ -0.56
CLK3-215ENST00000564353 MTCH1Q9NZJ7 389 aa11.58□□□□□ -0.56
CLK3-215ENST00000564353 HSF4Q9ULV5 492 aa11.58□□□□□ -0.56
CLK3-215ENST00000564353 E5RGE8 158 aa11.58□□□□□ -0.56
CLK3-215ENST00000564353 ADAM20O43506 726 aa11.58□□□□□ -0.56
CLK3-215ENST00000564353 SNRPEP62304 92 aaKnown RBP11.58□□□□□ -0.56
CLK3-215ENST00000564353 RUNX1Q01196 453 aa11.58□□□□□ -0.56
CLK3-215ENST00000564353 HIKESHIQ53FT3 197 aa11.58□□□□□ -0.56
CLK3-215ENST00000564353 ABLIM2Q6H8Q1 611 aa11.58□□□□□ -0.56
CLK3-215ENST00000564353 DHRS7BQ6IAN0 325 aaPredicted RBP11.58□□□□□ -0.56
CLK3-215ENST00000564353 MRPL21Q7Z2W9 205 aaKnown RBP11.58□□□□□ -0.56
CLK3-215ENST00000564353 OR51H1Q8NH63 302 aa11.58□□□□□ -0.56
CLK3-215ENST00000564353 KCNE4Q8WWG9 221 aa11.58□□□□□ -0.56
CLK3-215ENST00000564353 NSG2Q9Y328 171 aa11.58□□□□□ -0.56
CLK3-215ENST00000564353 TAAR5O14804 337 aa11.57□□□□□ -0.56
CLK3-215ENST00000564353 MPPED1O15442 326 aa11.57□□□□□ -0.56
CLK3-215ENST00000564353 ST8SIA3O43173 380 aa11.57□□□□□ -0.56
CLK3-215ENST00000564353 TXNL1O43396 289 aa11.57□□□□□ -0.56
CLK3-215ENST00000564353 CER1O95813 267 aa11.57□□□□□ -0.56
CLK3-215ENST00000564353 DTYMKP23919 212 aa11.57□□□□□ -0.56
CLK3-215ENST00000564353 GFRA1P56159 465 aa11.57□□□□□ -0.56
CLK3-215ENST00000564353 CCL20P78556 96 aa11.57□□□□□ -0.56
CLK3-215ENST00000564353 HERPUD1Q15011 391 aa11.57□□□□□ -0.56
CLK3-215ENST00000564353 OR2B11Q5JQS5 317 aa11.57□□□□□ -0.56
CLK3-215ENST00000564353 ZNF695Q8IW36 515 aa11.57□□□□□ -0.56
CLK3-215ENST00000564353 LGI3Q8N145 548 aa11.57□□□□□ -0.56
CLK3-215ENST00000564353 DMBX1Q8NFW5 382 aa11.57□□□□□ -0.56
CLK3-215ENST00000564353 MOB3AQ96BX8 217 aa11.57□□□□□ -0.56
CLK3-215ENST00000564353 C10orf35Q96D05 121 aa11.57□□□□□ -0.56
CLK3-215ENST00000564353 SAT2Q96F10 170 aaPredicted RBP11.57□□□□□ -0.56
CLK3-215ENST00000564353 C18orf12Q96KH6 178 aa11.57□□□□□ -0.56
CLK3-215ENST00000564353 RHOVQ96L33 236 aa11.57□□□□□ -0.56
CLK3-215ENST00000564353 ARRDC1-AS1Q9H2J1 176 aa11.57□□□□□ -0.56
CLK3-215ENST00000564353 CBY1Q9Y3M2 126 aa11.57□□□□□ -0.56
CLK3-215ENST00000564353 FBP1P09467 338 aa11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms