RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 CGB3P0DN86 165 aa13.35□□□□□ -0.27
CLN3-211ENST00000564091 CGB7P0DN87 165 aa13.35□□□□□ -0.27
CLN3-211ENST00000564091 TMEM225BP0DP42 221 aa13.35□□□□□ -0.27
CLN3-211ENST00000564091 ZNF19P17023 458 aa13.35□□□□□ -0.27
CLN3-211ENST00000564091 GLP1RP43220 463 aa13.35□□□□□ -0.27
CLN3-211ENST00000564091 RPL23AP62750 156 aaKnown RBP13.35□□□□□ -0.27
CLN3-211ENST00000564091 CD69Q07108 199 aa13.35□□□□□ -0.27
CLN3-211ENST00000564091 BNIP1Q12981 228 aa13.35□□□□□ -0.27
CLN3-211ENST00000564091 LTC4SQ16873 150 aa13.35□□□□□ -0.27
CLN3-211ENST00000564091 C8orf86Q6ZUL3 223 aa13.35□□□□□ -0.27
CLN3-211ENST00000564091 OR2W3Q7Z3T1 314 aa13.35□□□□□ -0.27
CLN3-211ENST00000564091 KCTD20Q7Z5Y7 419 aa13.35□□□□□ -0.27
CLN3-211ENST00000564091 THNSL2Q86YJ6 484 aa13.35□□□□□ -0.27
CLN3-211ENST00000564091 SAXO1Q8IYX7 474 aa13.35□□□□□ -0.27
CLN3-211ENST00000564091 OR13A1Q8NGR1 328 aa13.35□□□□□ -0.27
CLN3-211ENST00000564091 TOMM40LQ969M1 308 aa13.35□□□□□ -0.27
CLN3-211ENST00000564091 NR1H4Q96RI1 486 aaPredicted RBP13.35□□□□□ -0.27
CLN3-211ENST00000564091 ZCCHC4Q9H5U6 513 aa13.35□□□□□ -0.27
CLN3-211ENST00000564091 MYRFQ9Y2G1 1151 aa13.35□□□□□ -0.27
CLN3-211ENST00000564091 MEIKINA0A087WXM9 373 aa13.34□□□□□ -0.27
CLN3-211ENST00000564091 E9PQ18 207 aa13.34□□□□□ -0.27
CLN3-211ENST00000564091 H0YJX3 145 aa13.34□□□□□ -0.27
CLN3-211ENST00000564091 J3QR06 171 aa13.34□□□□□ -0.27
CLN3-211ENST00000564091 FCGR1AP12314 374 aa13.34□□□□□ -0.27
CLN3-211ENST00000564091 THBS3P49746 956 aa13.34□□□□□ -0.27
CLN3-211ENST00000564091 CCR9P51686 369 aa13.34□□□□□ -0.27
CLN3-211ENST00000564091 ZP1P60852 638 aa13.34□□□□□ -0.27
CLN3-211ENST00000564091 HES1Q14469 280 aa13.34□□□□□ -0.27
CLN3-211ENST00000564091 C1orf146Q5VVC0 180 aa13.34□□□□□ -0.27
CLN3-211ENST00000564091 OR51D1Q8NGF3 324 aa13.34□□□□□ -0.27
CLN3-211ENST00000564091 OR51T1Q8NGJ9 327 aa13.34□□□□□ -0.27
CLN3-211ENST00000564091 RFESDQ8TAC1 157 aa13.34□□□□□ -0.27
CLN3-211ENST00000564091 DPF1Q92782 380 aa13.34□□□□□ -0.27
CLN3-211ENST00000564091 PELI1Q96FA3 418 aa13.34□□□□□ -0.27
CLN3-211ENST00000564091 C4orf36Q96KX1 117 aa13.34□□□□□ -0.27
CLN3-211ENST00000564091 OSBPL10Q9BXB5 764 aa13.34□□□□□ -0.27
CLN3-211ENST00000564091 RHOFQ9HBH0 211 aa13.34□□□□□ -0.27
CLN3-211ENST00000564091 IMPAD1Q9NX62 359 aa13.34□□□□□ -0.27
CLN3-211ENST00000564091 CALYQ9NYX4 217 aa13.34□□□□□ -0.27
CLN3-211ENST00000564091 KIF25Q9UIL4 384 aa13.34□□□□□ -0.27
CLN3-211ENST00000564091 TRAV24A0A0B4J272 114 aa13.33□□□□□ -0.28
CLN3-211ENST00000564091 SERPINE3A8MV23 424 aa13.33□□□□□ -0.28
CLN3-211ENST00000564091 NUDT19A8MXV4 375 aa13.33□□□□□ -0.28
CLN3-211ENST00000564091 HCKP08631 526 aa13.33□□□□□ -0.28
CLN3-211ENST00000564091 TMEM11P17152 192 aa13.33□□□□□ -0.28
CLN3-211ENST00000564091 ALKBH1Q13686 389 aaKnown RBP13.33□□□□□ -0.28
CLN3-211ENST00000564091 KISS1Q15726 138 aa13.33□□□□□ -0.28
CLN3-211ENST00000564091 PAN3Q58A45 887 aaKnown RBP13.33□□□□□ -0.28
CLN3-211ENST00000564091 C5orf56Q8N8D9 126 aa13.33□□□□□ -0.28
CLN3-211ENST00000564091 ZNF565Q8N9K5 539 aa13.33□□□□□ -0.28
CLN3-211ENST00000564091 TRUB1Q8WWH5 349 aaKnown RBP13.33□□□□□ -0.28
CLN3-211ENST00000564091 CENPNQ96H22 339 aaPredicted RBP13.33□□□□□ -0.28
CLN3-211ENST00000564091 B9D2Q9BPU9 175 aa13.33□□□□□ -0.28
CLN3-211ENST00000564091 GPR61Q9BZJ8 451 aa13.33□□□□□ -0.28
CLN3-211ENST00000564091 AASSQ9UDR5 926 aa13.33□□□□□ -0.28
CLN3-211ENST00000564091 PSG11Q9UQ72 335 aa13.33□□□□□ -0.28
CLN3-211ENST00000564091 AMMECR1Q9Y4X0 333 aaPredicted RBP13.33□□□□□ -0.28
CLN3-211ENST00000564091 TRAV39A0A0B4J263 110 aa13.32□□□□□ -0.28
CLN3-211ENST00000564091 A0A1W2PPI3 338 aa13.32□□□□□ -0.28
CLN3-211ENST00000564091 GNG10P50151 68 aa13.32□□□□□ -0.28
CLN3-211ENST00000564091 ZSCAN26Q16670 478 aa13.32□□□□□ -0.28
CLN3-211ENST00000564091 LPCAT4Q643R3 524 aa13.32□□□□□ -0.28
CLN3-211ENST00000564091 ACBD7Q8N6N7 88 aa13.32□□□□□ -0.28
CLN3-211ENST00000564091 CHPT1Q8WUD6 406 aa13.32□□□□□ -0.28
CLN3-211ENST00000564091 DUX3Q96PT4 197 aa13.32□□□□□ -0.28
CLN3-211ENST00000564091 PCDHB16Q9NRJ7 776 aa13.32□□□□□ -0.28
CLN3-211ENST00000564091 IDI2-AS1Q9NZ38 188 aa13.32□□□□□ -0.28
CLN3-211ENST00000564091 A0A1W2PPE3 182 aa13.31□□□□□ -0.28
CLN3-211ENST00000564091 LINC01548A6NM66 108 aa13.31□□□□□ -0.28
CLN3-211ENST00000564091 IL1AP01583 271 aa13.31□□□□□ -0.28
CLN3-211ENST00000564091 IGKV1D-33P01593 117 aa13.31□□□□□ -0.28
CLN3-211ENST00000564091 IGKV1-33P01594 117 aa13.31□□□□□ -0.28
CLN3-211ENST00000564091 DBTP11182 482 aaKnown RBP13.31□□□□□ -0.28
CLN3-211ENST00000564091 C21orf33P30042 268 aaPredicted RBP13.31□□□□□ -0.28
CLN3-211ENST00000564091 MYCNOSP40205 109 aa13.31□□□□□ -0.28
CLN3-211ENST00000564091 MTNR1BP49286 362 aa13.31□□□□□ -0.28
CLN3-211ENST00000564091 MADCAM1Q13477 382 aa13.31□□□□□ -0.28
CLN3-211ENST00000564091 ZNF691Q5VV52 312 aa13.31□□□□□ -0.28
CLN3-211ENST00000564091 LHFPL3Q86UP9 236 aa13.31□□□□□ -0.28
CLN3-211ENST00000564091 KLHL30-AS1Q8NEE0 82 aa13.31□□□□□ -0.28
CLN3-211ENST00000564091 OR5D14Q8NGL3 314 aa13.31□□□□□ -0.28
CLN3-211ENST00000564091 OR10K1Q8NGX5 313 aa13.31□□□□□ -0.28
CLN3-211ENST00000564091 CNIH3Q8TBE1 160 aa13.31□□□□□ -0.28
CLN3-211ENST00000564091 PLPPR1Q8TBJ4 325 aa13.31□□□□□ -0.28
CLN3-211ENST00000564091 MRGPRDQ8TDS7 321 aa13.31□□□□□ -0.28
CLN3-211ENST00000564091 LGALS12Q96DT0 336 aa13.31□□□□□ -0.28
CLN3-211ENST00000564091 BARHL1Q9BZE3 327 aa13.31□□□□□ -0.28
CLN3-211ENST00000564091 ISG20L2Q9H9L3 353 aaKnown RBP13.31□□□□□ -0.28
CLN3-211ENST00000564091 ZFP57Q9NU63 452 aa13.31□□□□□ -0.28
CLN3-211ENST00000564091 EXOGQ9Y2C4 368 aaKnown RBP13.31□□□□□ -0.28
CLN3-211ENST00000564091 DSCAML1Q8TD84 2053 aa13.31□□□□□ -0.28
CLN3-211ENST00000564091 KIAA2026Q5HYC2 2103 aa13.31□□□□□ -0.28
CLN3-211ENST00000564091 NPIPB11E5RHQ5 1161 aa13.3□□□□□ -0.28
CLN3-211ENST00000564091 E9PI62 339 aa13.3□□□□□ -0.28
CLN3-211ENST00000564091 FGF16O43320 207 aa13.3□□□□□ -0.28
CLN3-211ENST00000564091 SULT1B1O43704 296 aa13.3□□□□□ -0.28
CLN3-211ENST00000564091 ZFPL1O95159 310 aa13.3□□□□□ -0.28
CLN3-211ENST00000564091 SSTR5P35346 364 aa13.3□□□□□ -0.28
CLN3-211ENST00000564091 SNRPGP62308 76 aaKnown RBP13.3□□□□□ -0.28
CLN3-211ENST00000564091 ZIK1Q3SY52 487 aaPredicted RBP13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms