RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 PPIL3Q9H2H8 161 aaKnown RBP13.75□□□□□ -0.21
VPS9D1-203ENST00000563798 FGF20Q9NP95 211 aaPredicted RBP13.75□□□□□ -0.21
VPS9D1-203ENST00000563798 FAM118AQ9NWS6 357 aa13.75□□□□□ -0.21
VPS9D1-203ENST00000563798 TRAV24A0A0B4J272 114 aa13.74□□□□□ -0.21
VPS9D1-203ENST00000563798 FAM90A18PA6NE21 464 aa13.74□□□□□ -0.21
VPS9D1-203ENST00000563798 FAM90A16PA6NEW6 464 aa13.74□□□□□ -0.21
VPS9D1-203ENST00000563798 FAM90A20PA6NIJ5 464 aa13.74□□□□□ -0.21
VPS9D1-203ENST00000563798 FAM90A9PA6NNJ1 464 aa13.74□□□□□ -0.21
VPS9D1-203ENST00000563798 FAM90A12PA8MX19 464 aa13.74□□□□□ -0.21
VPS9D1-203ENST00000563798 FAM90A5PA8MXJ8 464 aa13.74□□□□□ -0.21
VPS9D1-203ENST00000563798 TOR1AO14656 332 aa13.74□□□□□ -0.21
VPS9D1-203ENST00000563798 FAM90A15PP0C7V4 464 aa13.74□□□□□ -0.21
VPS9D1-203ENST00000563798 FAM90A13PP0C7W8 464 aa13.74□□□□□ -0.21
VPS9D1-203ENST00000563798 FAM90A14PP0C7W9 464 aa13.74□□□□□ -0.21
VPS9D1-203ENST00000563798 FAM90A24PP0C7X0 464 aa13.74□□□□□ -0.21
VPS9D1-203ENST00000563798 LIMS3P0CW19 117 aa13.74□□□□□ -0.21
VPS9D1-203ENST00000563798 LIMS4P0CW20 117 aa13.74□□□□□ -0.21
VPS9D1-203ENST00000563798 RAB3AP20336 220 aa13.74□□□□□ -0.21
VPS9D1-203ENST00000563798 KCNJ3P48549 501 aa13.74□□□□□ -0.21
VPS9D1-203ENST00000563798 CCDC58Q4VC31 144 aa13.74□□□□□ -0.21
VPS9D1-203ENST00000563798 ARSJQ5FYB0 599 aaPredicted RBP13.74□□□□□ -0.21
VPS9D1-203ENST00000563798 CCDC144NLQ6NUI1 221 aa13.74□□□□□ -0.21
VPS9D1-203ENST00000563798 THNSL2Q86YJ6 484 aa13.74□□□□□ -0.21
VPS9D1-203ENST00000563798 ZNF565Q8N9K5 539 aa13.74□□□□□ -0.21
VPS9D1-203ENST00000563798 OR9G1Q8NH87 305 aa13.74□□□□□ -0.21
VPS9D1-203ENST00000563798 CNIH3Q8TBE1 160 aa13.74□□□□□ -0.21
VPS9D1-203ENST00000563798 RGP1Q92546 391 aaPredicted RBP13.74□□□□□ -0.21
VPS9D1-203ENST00000563798 KIRREL1Q96J84 757 aa13.74□□□□□ -0.21
VPS9D1-203ENST00000563798 SLC25A33Q9BSK2 321 aa13.74□□□□□ -0.21
VPS9D1-203ENST00000563798 S100A14Q9HCY8 104 aa13.74□□□□□ -0.21
VPS9D1-203ENST00000563798 NPIPB11E5RHQ5 1161 aa13.73□□□□□ -0.21
VPS9D1-203ENST00000563798 H0YJX3 145 aa13.73□□□□□ -0.21
VPS9D1-203ENST00000563798 M0QZK8 103 aa13.73□□□□□ -0.21
VPS9D1-203ENST00000563798 GABRPO00591 440 aa13.73□□□□□ -0.21
VPS9D1-203ENST00000563798 CD24P25063 80 aa13.73□□□□□ -0.21
VPS9D1-203ENST00000563798 ATXN7L3Q14CW9 347 aaPredicted RBP13.73□□□□□ -0.21
VPS9D1-203ENST00000563798 OXLD1Q5BKU9 147 aa13.73□□□□□ -0.21
VPS9D1-203ENST00000563798 TCTEX1D4Q5JR98 221 aa13.73□□□□□ -0.21
VPS9D1-203ENST00000563798 RPL22L1Q6P5R6 122 aaKnown RBP13.73□□□□□ -0.21
VPS9D1-203ENST00000563798 Q6ZPA2 131 aa13.73□□□□□ -0.21
VPS9D1-203ENST00000563798 SLC16A12Q6ZSM3 486 aa13.73□□□□□ -0.21
VPS9D1-203ENST00000563798 CCDC121Q6ZUS5 278 aa13.73□□□□□ -0.21
VPS9D1-203ENST00000563798 PQLC1Q8N2U9 271 aa13.73□□□□□ -0.21
VPS9D1-203ENST00000563798 OR10A7Q8NGE5 316 aa13.73□□□□□ -0.21
VPS9D1-203ENST00000563798 TSEN15Q8WW01 171 aaKnown RBP13.73□□□□□ -0.21
VPS9D1-203ENST00000563798 RDH12Q96NR8 316 aa13.73□□□□□ -0.21
VPS9D1-203ENST00000563798 BARHL1Q9BZE3 327 aa13.73□□□□□ -0.21
VPS9D1-203ENST00000563798 IFT22Q9H7X7 185 aa13.73□□□□□ -0.21
VPS9D1-203ENST00000563798 PCDHB16Q9NRJ7 776 aa13.73□□□□□ -0.21
VPS9D1-203ENST00000563798 KIAA2026Q5HYC2 2103 aa13.73□□□□□ -0.21
VPS9D1-203ENST00000563798 NOTCH3Q9UM47 2321 aa13.73□□□□□ -0.21
VPS9D1-203ENST00000563798 FAM172BPA6NC97 362 aa13.72□□□□□ -0.21
VPS9D1-203ENST00000563798 MAGEB3O15480 346 aa13.72□□□□□ -0.21
VPS9D1-203ENST00000563798 WBP4O75554 376 aaKnown RBP13.72□□□□□ -0.21
VPS9D1-203ENST00000563798 C21orf33P30042 268 aaPredicted RBP13.72□□□□□ -0.21
VPS9D1-203ENST00000563798 MNDAP41218 407 aa13.72□□□□□ -0.21
VPS9D1-203ENST00000563798 GTF2A1P52655 376 aaPredicted RBP13.72□□□□□ -0.21
VPS9D1-203ENST00000563798 PAN3Q58A45 887 aaKnown RBP13.72□□□□□ -0.21
VPS9D1-203ENST00000563798 NHLRC3Q5JS37 347 aa13.72□□□□□ -0.21
VPS9D1-203ENST00000563798 UTF1Q5T230 341 aa13.72□□□□□ -0.21
VPS9D1-203ENST00000563798 RSBN1Q5VWQ0 802 aaPredicted RBP13.72□□□□□ -0.21
VPS9D1-203ENST00000563798 CENPVQ7Z7K6 275 aaPredicted RBP13.72□□□□□ -0.21
VPS9D1-203ENST00000563798 OR51A2Q8NGJ7 313 aa13.72□□□□□ -0.21
VPS9D1-203ENST00000563798 OR13A1Q8NGR1 328 aa13.72□□□□□ -0.21
VPS9D1-203ENST00000563798 GPR148Q8TDV2 347 aa13.72□□□□□ -0.21
VPS9D1-203ENST00000563798 TNFAIP8L1Q8WVP5 186 aa13.72□□□□□ -0.21
VPS9D1-203ENST00000563798 CAPSLQ8WWF8 208 aa13.72□□□□□ -0.21
VPS9D1-203ENST00000563798 NECAP2Q9NVZ3 263 aa13.72□□□□□ -0.21
VPS9D1-203ENST00000563798 CALYQ9NYX4 217 aa13.72□□□□□ -0.21
VPS9D1-203ENST00000563798 IL36GQ9NZH8 169 aa13.72□□□□□ -0.21
VPS9D1-203ENST00000563798 KIF25Q9UIL4 384 aa13.72□□□□□ -0.21
VPS9D1-203ENST00000563798 MEIKINA0A087WXM9 373 aa13.71□□□□□ -0.21
VPS9D1-203ENST00000563798 J3QR06 171 aa13.71□□□□□ -0.21
VPS9D1-203ENST00000563798 IL1AP01583 271 aa13.71□□□□□ -0.21
VPS9D1-203ENST00000563798 DCKP27707 260 aa13.71□□□□□ -0.21
VPS9D1-203ENST00000563798 ABCA11PQ4W5N1 156 aa13.71□□□□□ -0.21
VPS9D1-203ENST00000563798 IDI2-AS1Q9NZ38 188 aa13.71□□□□□ -0.21
VPS9D1-203ENST00000563798 AMMECR1Q9Y4X0 333 aaPredicted RBP13.71□□□□□ -0.21
VPS9D1-203ENST00000563798 OGG1O15527 345 aa13.7□□□□□ -0.22
VPS9D1-203ENST00000563798 CD2P06729 351 aa13.7□□□□□ -0.22
VPS9D1-203ENST00000563798 LPLP06858 475 aa13.7□□□□□ -0.22
VPS9D1-203ENST00000563798 FAM106CPP0CH98 169 aa13.7□□□□□ -0.22
VPS9D1-203ENST00000563798 OR3A4PP47883 348 aa13.7□□□□□ -0.22
VPS9D1-203ENST00000563798 ZSCAN26Q16670 478 aa13.7□□□□□ -0.22
VPS9D1-203ENST00000563798 XAF1Q6GPH4 301 aa13.7□□□□□ -0.22
VPS9D1-203ENST00000563798 PLPPR1Q8TBJ4 325 aa13.7□□□□□ -0.22
VPS9D1-203ENST00000563798 NR1H4Q96RI1 486 aaPredicted RBP13.7□□□□□ -0.22
VPS9D1-203ENST00000563798 GPER1Q99527 375 aa13.7□□□□□ -0.22
VPS9D1-203ENST00000563798 TMEM138Q9NPI0 162 aa13.7□□□□□ -0.22
VPS9D1-203ENST00000563798 ING3Q9NXR8 418 aa13.7□□□□□ -0.22
VPS9D1-203ENST00000563798 TAS2R4Q9NYW5 299 aa13.7□□□□□ -0.22
VPS9D1-203ENST00000563798 PSG11Q9UQ72 335 aa13.7□□□□□ -0.22
VPS9D1-203ENST00000563798 TSSC4Q9Y5U2 329 aaPredicted RBP13.7□□□□□ -0.22
VPS9D1-203ENST00000563798 PRB2P02812 416 aaPredicted RBP13.69□□□□□ -0.22
VPS9D1-203ENST00000563798 NFYBP25208 207 aa13.69□□□□□ -0.22
VPS9D1-203ENST00000563798 GLP1RP43220 463 aa13.69□□□□□ -0.22
VPS9D1-203ENST00000563798 SOX2P48431 317 aa13.69□□□□□ -0.22
VPS9D1-203ENST00000563798 ETV1P50549 477 aa13.69□□□□□ -0.22
VPS9D1-203ENST00000563798 RSU1Q15404 277 aa13.69□□□□□ -0.22
VPS9D1-203ENST00000563798 SMN1Q16637 294 aaKnown RBP13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms