RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 GIMAP1Q8WWP7 306 aa4.64□□□□□ -1.67
VPS13C-209ENST00000560637 GALMQ96C23 342 aa4.64□□□□□ -1.67
VPS13C-209ENST00000560637 BBC3Q96PG8 261 aaPredicted RBP4.64□□□□□ -1.67
VPS13C-209ENST00000560637 SCGB3A2Q96PL1 93 aa4.64□□□□□ -1.67
VPS13C-209ENST00000560637 DDOQ99489 341 aa4.64□□□□□ -1.67
VPS13C-209ENST00000560637 RBM38Q9H0Z9 239 aaKnown RBP4.64□□□□□ -1.67
VPS13C-209ENST00000560637 GP6Q9HCN6 339 aa4.64□□□□□ -1.67
VPS13C-209ENST00000560637 MYOZ1Q9NP98 299 aaPredicted RBP4.64□□□□□ -1.67
VPS13C-209ENST00000560637 ZNF581Q9P0T4 197 aa4.64□□□□□ -1.67
VPS13C-209ENST00000560637 SLC25A10Q9UBX3 287 aaPredicted RBP4.64□□□□□ -1.67
VPS13C-209ENST00000560637 LAMA5O15230 3695 aa4.64□□□□□ -1.67
VPS13C-209ENST00000560637 hCG_1809904A0A1W2PP81 198 aa4.64□□□□□ -1.67
VPS13C-209ENST00000560637 A0A1W2PPE2 198 aa4.64□□□□□ -1.67
VPS13C-209ENST00000560637 A0A1W2PR64 198 aa4.64□□□□□ -1.67
VPS13C-209ENST00000560637 A0A1W2PRV1 198 aa4.64□□□□□ -1.67
VPS13C-209ENST00000560637 FUOMA2VDF0 154 aa4.64□□□□□ -1.67
VPS13C-209ENST00000560637 LANCL1O43813 399 aa4.64□□□□□ -1.67
VPS13C-209ENST00000560637 CNIH1O95406 144 aa4.64□□□□□ -1.67
VPS13C-209ENST00000560637 OR2H2O95918 312 aa4.64□□□□□ -1.67
VPS13C-209ENST00000560637 KRASP01116 189 aa4.64□□□□□ -1.67
VPS13C-209ENST00000560637 RLN2P04090 185 aa4.64□□□□□ -1.67
VPS13C-209ENST00000560637 NR2C2APQ86WQ0 139 aa4.64□□□□□ -1.67
VPS13C-209ENST00000560637 OR2T35Q8NGX2 323 aa4.64□□□□□ -1.67
VPS13C-209ENST00000560637 OR1S1Q8NH92 325 aa4.64□□□□□ -1.67
VPS13C-209ENST00000560637 MEGF10Q96KG7 1140 aa4.64□□□□□ -1.67
VPS13C-209ENST00000560637 DUX5Q96PT3 197 aa4.64□□□□□ -1.67
VPS13C-209ENST00000560637 HS3ST6Q96QI5 342 aa4.64□□□□□ -1.67
VPS13C-209ENST00000560637 BCL7BQ9BQE9 202 aa4.64□□□□□ -1.67
VPS13C-209ENST00000560637 SULT4A1Q9BR01 284 aa4.64□□□□□ -1.67
VPS13C-209ENST00000560637 MRI1Q9BV20 369 aa4.64□□□□□ -1.67
VPS13C-209ENST00000560637 MIXL1Q9H2W2 232 aa4.64□□□□□ -1.67
VPS13C-209ENST00000560637 SF3B6Q9Y3B4 125 aaKnown RBP4.64□□□□□ -1.67
VPS13C-209ENST00000560637 TMEM30CPA0ZSE6 113 aa4.63□□□□□ -1.67
VPS13C-209ENST00000560637 H3BP45 60 aa4.63□□□□□ -1.67
VPS13C-209ENST00000560637 BOLA2-SMG1P6H3BVE0 249 aa4.63□□□□□ -1.67
VPS13C-209ENST00000560637 ST8SIA5O15466 376 aa4.63□□□□□ -1.67
VPS13C-209ENST00000560637 C1QL1O75973 258 aa4.63□□□□□ -1.67
VPS13C-209ENST00000560637 DAOP14920 347 aa4.63□□□□□ -1.67
VPS13C-209ENST00000560637 TAS2R46P59540 309 aa4.63□□□□□ -1.67
VPS13C-209ENST00000560637 ERVFRD-1P60508 538 aa4.63□□□□□ -1.67
VPS13C-209ENST00000560637 ERVK-16P61578 105 aa4.63□□□□□ -1.67
VPS13C-209ENST00000560637 RPS11P62280 158 aaKnown RBP eCLIP4.63□□□□□ -1.67
VPS13C-209ENST00000560637 ADORA2A-AS1P86434 159 aa4.63□□□□□ -1.67
VPS13C-209ENST00000560637 ZNF181Q2M3W8 571 aa4.63□□□□□ -1.67
VPS13C-209ENST00000560637 IGSF11Q5DX21 431 aa4.63□□□□□ -1.67
VPS13C-209ENST00000560637 TGIF2LYQ8IUE0 185 aa4.63□□□□□ -1.67
VPS13C-209ENST00000560637 OR8B3Q8NGG8 313 aa4.63□□□□□ -1.67
VPS13C-209ENST00000560637 MRPL24Q96A35 216 aaKnown RBP4.63□□□□□ -1.67
VPS13C-209ENST00000560637 ABHD14BQ96IU4 210 aa4.63□□□□□ -1.67
VPS13C-209ENST00000560637 OR8B2Q96RD0 313 aa4.63□□□□□ -1.67
VPS13C-209ENST00000560637 PRRT1Q99946 306 aa4.63□□□□□ -1.67
VPS13C-209ENST00000560637 NECAP2Q9NVZ3 263 aa4.63□□□□□ -1.67
VPS13C-209ENST00000560637 KIR2DS1A0A191URI9 304 aa4.63□□□□□ -1.67
VPS13C-209ENST00000560637 CEBPZOSA8MTT3 80 aa4.63□□□□□ -1.67
VPS13C-209ENST00000560637 C17orf100A8MU93 164 aa4.63□□□□□ -1.67
VPS13C-209ENST00000560637 E7EQL1 145 aa4.63□□□□□ -1.67
VPS13C-209ENST00000560637 GABARAPH6UMI1 98 aa4.63□□□□□ -1.67
VPS13C-209ENST00000560637 XRCC3O43542 346 aa4.63□□□□□ -1.67
VPS13C-209ENST00000560637 TCRBP04435 133 aa4.63□□□□□ -1.67
VPS13C-209ENST00000560637 GLAP06280 429 aa4.63□□□□□ -1.67
VPS13C-209ENST00000560637 GSTT2P0CG29 244 aa4.63□□□□□ -1.67
VPS13C-209ENST00000560637 CD24P25063 80 aa4.63□□□□□ -1.67
VPS13C-209ENST00000560637 SSTR5P35346 364 aa4.63□□□□□ -1.67
VPS13C-209ENST00000560637 KIR2DS4P43632 304 aa4.63□□□□□ -1.67
VPS13C-209ENST00000560637 KIR2DS1Q14954 304 aa4.63□□□□□ -1.67
VPS13C-209ENST00000560637 GLDNQ6ZMI3 551 aaPredicted RBP4.63□□□□□ -1.67
VPS13C-209ENST00000560637 LYSMD2Q8IV50 215 aa4.63□□□□□ -1.67
VPS13C-209ENST00000560637 OR4D10Q8NGI6 311 aa4.63□□□□□ -1.67
VPS13C-209ENST00000560637 FBLIM1Q8WUP2 373 aa4.63□□□□□ -1.67
VPS13C-209ENST00000560637 MRPS24Q96EL2 167 aaKnown RBP4.63□□□□□ -1.67
VPS13C-209ENST00000560637 UQCC2Q9BRT2 126 aa4.63□□□□□ -1.67
VPS13C-209ENST00000560637 CCDC32Q9BV29 185 aa4.63□□□□□ -1.67
VPS13C-209ENST00000560637 PECRQ9BY49 303 aa4.63□□□□□ -1.67
VPS13C-209ENST00000560637 MAGT1Q9H0U3 335 aa4.63□□□□□ -1.67
VPS13C-209ENST00000560637 PRORYQ9H606 182 aa4.63□□□□□ -1.67
VPS13C-209ENST00000560637 MTCH1Q9NZJ7 389 aa4.63□□□□□ -1.67
VPS13C-209ENST00000560637 EDARQ9UNE0 448 aa4.63□□□□□ -1.67
VPS13C-209ENST00000560637 HSPB11Q9Y547 144 aa4.63□□□□□ -1.67
VPS13C-209ENST00000560637 B9A039 149 aa4.62□□□□□ -1.67
VPS13C-209ENST00000560637 H3BUI4 141 aa4.62□□□□□ -1.67
VPS13C-209ENST00000560637 TGFAP01135 160 aa4.62□□□□□ -1.67
VPS13C-209ENST00000560637 PRH1P02810 166 aa4.62□□□□□ -1.67
VPS13C-209ENST00000560637 SCTP09683 121 aa4.62□□□□□ -1.67
VPS13C-209ENST00000560637 CEACAM8P31997 349 aaPredicted RBP4.62□□□□□ -1.67
VPS13C-209ENST00000560637 CDSNQ15517 529 aa4.62□□□□□ -1.67
VPS13C-209ENST00000560637 RBMS3Q6XE24 437 aaKnown RBP4.62□□□□□ -1.67
VPS13C-209ENST00000560637 ZNF525Q8N782 197 aa4.62□□□□□ -1.67
VPS13C-209ENST00000560637 OR52L2PQ8NGH6 319 aa4.62□□□□□ -1.67
VPS13C-209ENST00000560637 ITPKCQ96DU7 683 aa4.62□□□□□ -1.67
VPS13C-209ENST00000560637 C1QTNF5Q9BXJ0 243 aa4.62□□□□□ -1.67
VPS13C-209ENST00000560637 OR2D2Q9H210 308 aa4.62□□□□□ -1.67
VPS13C-209ENST00000560637 CYSLTR2Q9NS75 346 aa4.62□□□□□ -1.67
VPS13C-209ENST00000560637 TMEM106BQ9NUM4 274 aa4.62□□□□□ -1.67
VPS13C-209ENST00000560637 ZNF224Q9NZL3 707 aa4.62□□□□□ -1.67
VPS13C-209ENST00000560637 TRBV5-5A0A0J9YX44 114 aa4.62□□□□□ -1.67
VPS13C-209ENST00000560637 ARPC5O15511 151 aa4.62□□□□□ -1.67
VPS13C-209ENST00000560637 KALRNO60229 2985 aa4.62□□□□□ -1.67
VPS13C-209ENST00000560637 CCL3L1P16619 93 aa4.62□□□□□ -1.67
VPS13C-209ENST00000560637 PIGPP57054 158 aa4.62□□□□□ -1.67
VPS13C-209ENST00000560637 EFNB1P98172 346 aa4.62□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms