RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 OR4S1Q8NGB4 309 aa7.68□□□□□ -1.18
LDLR-211ENST00000560173 OR4M1Q8NGD0 313 aa7.68□□□□□ -1.18
LDLR-211ENST00000560173 OR51T1Q8NGJ9 327 aa7.68□□□□□ -1.18
LDLR-211ENST00000560173 OR10K1Q8NGX5 313 aa7.68□□□□□ -1.18
LDLR-211ENST00000560173 TNFRSF14Q92956 283 aa7.68□□□□□ -1.18
LDLR-211ENST00000560173 LHX4Q969G2 390 aa7.68□□□□□ -1.18
LDLR-211ENST00000560173 ZNF48Q96MX3 618 aaPredicted RBP7.68□□□□□ -1.18
LDLR-211ENST00000560173 MS4A7Q9GZW8 240 aaPredicted RBP7.68□□□□□ -1.18
LDLR-211ENST00000560173 CHST6Q9GZX3 395 aa7.68□□□□□ -1.18
LDLR-211ENST00000560173 PPIL3Q9H2H8 161 aaKnown RBP7.68□□□□□ -1.18
LDLR-211ENST00000560173 RNF167Q9H6Y7 350 aa7.68□□□□□ -1.18
LDLR-211ENST00000560173 METTL8Q9H825 291 aaKnown RBP7.68□□□□□ -1.18
LDLR-211ENST00000560173 SIRT7Q9NRC8 400 aa7.68□□□□□ -1.18
LDLR-211ENST00000560173 SOX21Q9Y651 276 aaPredicted RBP7.68□□□□□ -1.18
LDLR-211ENST00000560173 A0A1W2PPH5 198 aa7.67□□□□□ -1.18
LDLR-211ENST00000560173 RNASEK-C17orf49H0YIS7 233 aa7.67□□□□□ -1.18
LDLR-211ENST00000560173 SLC33A1O00400 549 aaPredicted RBP7.67□□□□□ -1.18
LDLR-211ENST00000560173 MGST3O14880 152 aa7.67□□□□□ -1.18
LDLR-211ENST00000560173 MAS1P04201 325 aa7.67□□□□□ -1.18
LDLR-211ENST00000560173 ZNF44P15621 663 aa7.67□□□□□ -1.18
LDLR-211ENST00000560173 CCL3L1P16619 93 aa7.67□□□□□ -1.18
LDLR-211ENST00000560173 RAB3BP20337 219 aa7.67□□□□□ -1.18
LDLR-211ENST00000560173 PRTN3P24158 256 aa7.67□□□□□ -1.18
LDLR-211ENST00000560173 LMO1P25800 156 aa7.67□□□□□ -1.18
LDLR-211ENST00000560173 TGFBR1P36897 503 aa7.67□□□□□ -1.18
LDLR-211ENST00000560173 DLX1P56177 255 aa7.67□□□□□ -1.18
LDLR-211ENST00000560173 DLX6P56179 175 aa7.67□□□□□ -1.18
LDLR-211ENST00000560173 P2RX3P56373 397 aa7.67□□□□□ -1.18
LDLR-211ENST00000560173 EDDM3BP56851 147 aa7.67□□□□□ -1.18
LDLR-211ENST00000560173 DEFA1P59665 94 aa7.67□□□□□ -1.18
LDLR-211ENST00000560173 DEFA3P59666 94 aa7.67□□□□□ -1.18
LDLR-211ENST00000560173 PRB3Q04118 309 aaPredicted RBP7.67□□□□□ -1.18
LDLR-211ENST00000560173 MXD1Q05195 221 aa7.67□□□□□ -1.18
LDLR-211ENST00000560173 MEF2CQ06413 473 aaPredicted RBP7.67□□□□□ -1.18
LDLR-211ENST00000560173 KLRD1Q13241 179 aa7.67□□□□□ -1.18
LDLR-211ENST00000560173 EDDM3AQ14507 147 aa7.67□□□□□ -1.18
LDLR-211ENST00000560173 RGS21Q2M5E4 152 aa7.67□□□□□ -1.18
LDLR-211ENST00000560173 KRTAP24-1Q3LI83 254 aa7.67□□□□□ -1.18
LDLR-211ENST00000560173 PIGYQ3MUY2 71 aa7.67□□□□□ -1.18
LDLR-211ENST00000560173 HSD17B12Q53GQ0 312 aa7.67□□□□□ -1.18
LDLR-211ENST00000560173 NHLRC3Q5JS37 347 aa7.67□□□□□ -1.18
LDLR-211ENST00000560173 GDPD3Q7L5L3 318 aa7.67□□□□□ -1.18
LDLR-211ENST00000560173 TCF23Q7RTU1 214 aa7.67□□□□□ -1.18
LDLR-211ENST00000560173 LRRTM1Q86UE6 522 aa7.67□□□□□ -1.18
LDLR-211ENST00000560173 CCDC190Q86UF4 302 aa7.67□□□□□ -1.18
LDLR-211ENST00000560173 MFSD4AQ8N468 514 aa7.67□□□□□ -1.18
LDLR-211ENST00000560173 C11orf42Q8N5U0 333 aa7.67□□□□□ -1.18
LDLR-211ENST00000560173 SIGLECL1Q8N7X8 197 aa7.67□□□□□ -1.18
LDLR-211ENST00000560173 OR5D13Q8NGL4 314 aa7.67□□□□□ -1.18
LDLR-211ENST00000560173 PPP1R35Q8TAP8 253 aa7.67□□□□□ -1.18
LDLR-211ENST00000560173 C1orf147Q96MC9 270 aaPredicted RBP7.67□□□□□ -1.18
LDLR-211ENST00000560173 CMTM3Q96MX0 182 aa7.67□□□□□ -1.18
LDLR-211ENST00000560173 METTL9Q9H1A3 318 aa7.67□□□□□ -1.18
LDLR-211ENST00000560173 TCF7L1Q9HCS4 588 aa7.67□□□□□ -1.18
LDLR-211ENST00000560173 ESM1Q9NQ30 184 aa7.67□□□□□ -1.18
LDLR-211ENST00000560173 ING4Q9UNL4 249 aa7.67□□□□□ -1.18
LDLR-211ENST00000560173 MRPS28Q9Y2Q9 187 aaKnown RBP7.67□□□□□ -1.18
LDLR-211ENST00000560173 TENM1Q9UKZ4 2725 aa7.66□□□□□ -1.18
LDLR-211ENST00000560173 DSCAML1Q8TD84 2053 aa7.66□□□□□ -1.18
LDLR-211ENST00000560173 TRAV24A0A0B4J272 114 aa7.66□□□□□ -1.18
LDLR-211ENST00000560173 A0A0G2JK05 382 aa7.66□□□□□ -1.18
LDLR-211ENST00000560173 MDFIC2A0A1B0GVS7 189 aa7.66□□□□□ -1.18
LDLR-211ENST00000560173 A0A1W2PP11 408 aa7.66□□□□□ -1.18
LDLR-211ENST00000560173 hADV38S2A0JD32 116 aa7.66□□□□□ -1.18
LDLR-211ENST00000560173 MEGF11A6BM72 1044 aa7.66□□□□□ -1.18
LDLR-211ENST00000560173 NOTOA8MTQ0 251 aa7.66□□□□□ -1.18
LDLR-211ENST00000560173 DEGS1O15121 323 aa7.66□□□□□ -1.18
LDLR-211ENST00000560173 ZNF780AO75290 641 aaPredicted RBP7.66□□□□□ -1.18
LDLR-211ENST00000560173 HTR3BO95264 441 aa7.66□□□□□ -1.18
LDLR-211ENST00000560173 CSN2P05814 226 aa7.66□□□□□ -1.18
LDLR-211ENST00000560173 SERPINA2P20848 420 aa7.66□□□□□ -1.18
LDLR-211ENST00000560173 ERP29P30040 261 aaKnown RBP7.66□□□□□ -1.18
LDLR-211ENST00000560173 TALDO1P37837 337 aa7.66□□□□□ -1.18
LDLR-211ENST00000560173 RBM11P57052 281 aaKnown RBP7.66□□□□□ -1.18
LDLR-211ENST00000560173 SCAND1P57086 179 aa7.66□□□□□ -1.18
LDLR-211ENST00000560173 SCN1BQ07699 218 aa7.66□□□□□ -1.18
LDLR-211ENST00000560173 DEFB112Q30KQ8 113 aa7.66□□□□□ -1.18
LDLR-211ENST00000560173 SLC22A6Q4U2R8 563 aa7.66□□□□□ -1.18
LDLR-211ENST00000560173 NCR3LG1Q68D85 454 aa7.66□□□□□ -1.18
LDLR-211ENST00000560173 HCP5Q6MZN7 132 aa7.66□□□□□ -1.18
LDLR-211ENST00000560173 GLIPR1L1Q6UWM5 242 aa7.66□□□□□ -1.18
LDLR-211ENST00000560173 PDZD9Q8IXQ8 264 aa7.66□□□□□ -1.18
LDLR-211ENST00000560173 OSR2Q8N2R0 312 aa7.66□□□□□ -1.18
LDLR-211ENST00000560173 PIP4P2Q8N4L2 257 aa7.66□□□□□ -1.18
LDLR-211ENST00000560173 TPRX1Q8N7U7 411 aa7.66□□□□□ -1.18
LDLR-211ENST00000560173 ZDHHC22Q8N966 263 aa7.66□□□□□ -1.18
LDLR-211ENST00000560173 GDPD1Q8N9F7 314 aa7.66□□□□□ -1.18
LDLR-211ENST00000560173 OR4D6Q8NGJ1 314 aa7.66□□□□□ -1.18
LDLR-211ENST00000560173 JMJD8Q96S16 334 aa7.66□□□□□ -1.18
LDLR-211ENST00000560173 S100A13Q99584 98 aa7.66□□□□□ -1.18
LDLR-211ENST00000560173 UQCC2Q9BRT2 126 aa7.66□□□□□ -1.18
LDLR-211ENST00000560173 BARHL1Q9BZE3 327 aa7.66□□□□□ -1.18
LDLR-211ENST00000560173 PPA2Q9H2U2 334 aa7.66□□□□□ -1.18
LDLR-211ENST00000560173 PRDM13Q9H4Q3 707 aa7.66□□□□□ -1.18
LDLR-211ENST00000560173 ZNF581Q9P0T4 197 aa7.66□□□□□ -1.18
LDLR-211ENST00000560173 ABRACLQ9P1F3 81 aa7.66□□□□□ -1.18
LDLR-211ENST00000560173 A0A0U1RQK1 487 aa7.65□□□□□ -1.18
LDLR-211ENST00000560173 MEX3AA1L020 520 aaKnown RBP7.65□□□□□ -1.18
LDLR-211ENST00000560173 DNAJC9-AS1A6NH13 148 aa7.65□□□□□ -1.18
LDLR-211ENST00000560173 C17orf98A8MV24 154 aa7.65□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms