RNA–Protein interactions for RNA: ENST00000559192.5

USP3-210, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 5,499 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-210ENST00000559192 TANC1Q9C0D5 1861 aa6.25□□□□□ -1.41
USP3-210ENST00000559192 DEGS1O15121 323 aa6.25□□□□□ -1.41
USP3-210ENST00000559192 SCGB1A1P11684 91 aa6.25□□□□□ -1.41
USP3-210ENST00000559192 PNLIPP16233 465 aa6.25□□□□□ -1.41
USP3-210ENST00000559192 OR3A1P47881 315 aa6.25□□□□□ -1.41
USP3-210ENST00000559192 HINT1P49773 126 aaPredicted RBP6.25□□□□□ -1.41
USP3-210ENST00000559192 PIGYQ3MUY2 71 aa6.25□□□□□ -1.41
USP3-210ENST00000559192 ZNF658BQ4V348 819 aaPredicted RBP6.25□□□□□ -1.41
USP3-210ENST00000559192 TBC1D26Q86UD7 250 aa6.25□□□□□ -1.41
USP3-210ENST00000559192 BPIFA4PQ86YQ2 179 aa6.25□□□□□ -1.41
USP3-210ENST00000559192 SLC25A43Q8WUT9 341 aaPredicted RBP6.25□□□□□ -1.41
USP3-210ENST00000559192 NTNG2Q96CW9 530 aa6.25□□□□□ -1.41
USP3-210ENST00000559192 MFRPQ9BY79 579 aa6.25□□□□□ -1.41
USP3-210ENST00000559192 GPR61Q9BZJ8 451 aa6.25□□□□□ -1.41
USP3-210ENST00000559192 G6PC2Q9NQR9 355 aa6.25□□□□□ -1.41
USP3-210ENST00000559192 B4GALT7Q9UBV7 327 aa6.25□□□□□ -1.41
USP3-210ENST00000559192 PITPNC1Q9UKF7 332 aa6.25□□□□□ -1.41
USP3-210ENST00000559192 TMED3Q9Y3Q3 217 aa6.25□□□□□ -1.41
USP3-210ENST00000559192 CACNA1CQ13936 2221 aa6.25□□□□□ -1.41
USP3-210ENST00000559192 IGLV1-36A0A0B4J1U3 117 aa6.25□□□□□ -1.41
USP3-210ENST00000559192 NKX2-6A6NCS4 301 aa6.25□□□□□ -1.41
USP3-210ENST00000559192 OR7C2O60412 319 aa6.25□□□□□ -1.41
USP3-210ENST00000559192 OPN1MWP04001 364 aa6.25□□□□□ -1.41
USP3-210ENST00000559192 OPN1MW2P0DN77 364 aa6.25□□□□□ -1.41
USP3-210ENST00000559192 OPN1MW3P0DN78 364 aa6.25□□□□□ -1.41
USP3-210ENST00000559192 CLN3Q13286 438 aa6.25□□□□□ -1.41
USP3-210ENST00000559192 TMEM241Q24JQ0 296 aa6.25□□□□□ -1.41
USP3-210ENST00000559192 ZNF774Q6NX45 483 aa6.25□□□□□ -1.41
USP3-210ENST00000559192 Q6ZS52 159 aa6.25□□□□□ -1.41
USP3-210ENST00000559192 EIF4E3Q8N5X7 224 aaKnown RBP6.25□□□□□ -1.41
USP3-210ENST00000559192 PP6455Q8WZ26 134 aa6.25□□□□□ -1.41
USP3-210ENST00000559192 AQP10Q96PS8 301 aa6.25□□□□□ -1.41
USP3-210ENST00000559192 NLRC5Q86WI3 1866 aa6.25□□□□□ -1.41
USP3-210ENST00000559192 C5orf49A4QMS7 147 aa6.25□□□□□ -1.41
USP3-210ENST00000559192 TRGC2P03986 189 aa6.25□□□□□ -1.41
USP3-210ENST00000559192 RNF224P0DH78 156 aa6.25□□□□□ -1.41
USP3-210ENST00000559192 CDC34P49427 236 aaPredicted RBP6.25□□□□□ -1.41
USP3-210ENST00000559192 EMP1P54849 157 aa6.25□□□□□ -1.41
USP3-210ENST00000559192 ZNF468Q5VIY5 522 aaPredicted RBP6.25□□□□□ -1.41
USP3-210ENST00000559192 DMRTA1Q5VZB9 504 aa6.25□□□□□ -1.41
USP3-210ENST00000559192 PTCRAQ6ISU1 281 aaPredicted RBP6.25□□□□□ -1.41
USP3-210ENST00000559192 BTNL3Q6UXE8 466 aa6.25□□□□□ -1.41
USP3-210ENST00000559192 CYB561D1Q8N8Q1 229 aa6.25□□□□□ -1.41
USP3-210ENST00000559192 OR4C12Q96R67 309 aa6.25□□□□□ -1.41
USP3-210ENST00000559192 RSG1Q9BU20 258 aa6.25□□□□□ -1.41
USP3-210ENST00000559192 GGACTQ9BVM4 153 aa6.25□□□□□ -1.41
USP3-210ENST00000559192 WDR13Q9H1Z4 485 aa6.25□□□□□ -1.41
USP3-210ENST00000559192 OBP2BQ9NPH6 170 aa6.25□□□□□ -1.41
USP3-210ENST00000559192 MMP17Q9ULZ9 603 aa6.25□□□□□ -1.41
USP3-210ENST00000559192 KIR2DS1A0A191URI9 304 aa6.25□□□□□ -1.41
USP3-210ENST00000559192 DHHO43323 396 aa6.25□□□□□ -1.41
USP3-210ENST00000559192 MBPP02686 304 aaPredicted RBP6.25□□□□□ -1.41
USP3-210ENST00000559192 SMIM10L1P0DMW3 83 aa6.25□□□□□ -1.41
USP3-210ENST00000559192 CHRNA7P36544 502 aa6.25□□□□□ -1.41
USP3-210ENST00000559192 KIR2DS4P43632 304 aa6.25□□□□□ -1.41
USP3-210ENST00000559192 RUNX1Q01196 453 aa6.25□□□□□ -1.41
USP3-210ENST00000559192 KIR2DS1Q14954 304 aa6.25□□□□□ -1.41
USP3-210ENST00000559192 HLA-BQ31612 363 aa6.25□□□□□ -1.41
USP3-210ENST00000559192 FAM78BQ5VT40 261 aa6.25□□□□□ -1.41
USP3-210ENST00000559192 FGF11Q92914 225 aa6.25□□□□□ -1.41
USP3-210ENST00000559192 PTX4Q96A99 478 aa6.25□□□□□ -1.41
USP3-210ENST00000559192 SMIM10Q96HG1 83 aa6.25□□□□□ -1.41
USP3-210ENST00000559192 SSUH2Q9Y2M2 353 aa6.25□□□□□ -1.41
USP3-210ENST00000559192 PPP1CCP36873 323 aaKnown RBP6.24□□□□□ -1.41
USP3-210ENST00000559192 TAS2R45P59539 299 aa6.24□□□□□ -1.41
USP3-210ENST00000559192 UBE2NP61088 152 aaKnown RBP6.24□□□□□ -1.41
USP3-210ENST00000559192 LIAT1Q6ZQX7 453 aa6.24□□□□□ -1.41
USP3-210ENST00000559192 ZNF721Q8TF20 911 aa6.24□□□□□ -1.41
USP3-210ENST00000559192 RAB24Q969Q5 203 aa6.24□□□□□ -1.41
USP3-210ENST00000559192 TRIB1Q96RU8 372 aa6.24□□□□□ -1.41
USP3-210ENST00000559192 SPSB2Q99619 263 aa6.24□□□□□ -1.41
USP3-210ENST00000559192 Q9N2K0 584 aa6.24□□□□□ -1.41
USP3-210ENST00000559192 TIMM10BQ9Y5J6 103 aa6.24□□□□□ -1.41
USP3-210ENST00000559192 SCN2AQ99250 2005 aa6.24□□□□□ -1.41
USP3-210ENST00000559192 TRPM6Q9BX84 2022 aa6.24□□□□□ -1.41
USP3-210ENST00000559192 LIPT2A6NK58 231 aa6.24□□□□□ -1.41
USP3-210ENST00000559192 FAM87AP0C7U9 286 aa6.24□□□□□ -1.41
USP3-210ENST00000559192 FOXK1P85037 733 aa6.24□□□□□ -1.41
USP3-210ENST00000559192 ZNF816Q0VGE8 651 aaPredicted RBP6.24□□□□□ -1.41
USP3-210ENST00000559192 UNC119Q13432 240 aa6.24□□□□□ -1.41
USP3-210ENST00000559192 UBE2V2Q15819 145 aa6.24□□□□□ -1.41
USP3-210ENST00000559192 ZNF124Q15973 351 aa6.24□□□□□ -1.41
USP3-210ENST00000559192 ERGIC1Q969X5 290 aa6.24□□□□□ -1.41
USP3-210ENST00000559192 DMRT1Q9Y5R6 373 aa6.24□□□□□ -1.41
USP3-210ENST00000559192 A0A1W2PPC4 97 aa6.24□□□□□ -1.41
USP3-210ENST00000559192 H0YL77 283 aa6.24□□□□□ -1.41
USP3-210ENST00000559192 ZNF737O75373 536 aa6.24□□□□□ -1.41
USP3-210ENST00000559192 SLC25A6P12236 298 aa6.24□□□□□ -1.41
USP3-210ENST00000559192 MST1P26927 711 aa6.24□□□□□ -1.41
USP3-210ENST00000559192 ATP6V0CP27449 155 aa6.24□□□□□ -1.41
USP3-210ENST00000559192 GCH1P30793 250 aa6.24□□□□□ -1.41
USP3-210ENST00000559192 PRRX1P54821 245 aa6.24□□□□□ -1.41
USP3-210ENST00000559192 TAS2R60P59551 318 aa6.24□□□□□ -1.41
USP3-210ENST00000559192 SURF2Q15527 256 aaPredicted RBP6.24□□□□□ -1.41
USP3-210ENST00000559192 SPINK9Q5DT21 86 aa6.24□□□□□ -1.41
USP3-210ENST00000559192 APCDD1LQ8NCL9 501 aa6.24□□□□□ -1.41
USP3-210ENST00000559192 OR52M1Q8NGK5 317 aa6.24□□□□□ -1.41
USP3-210ENST00000559192 UTP23Q9BRU9 249 aaKnown RBP6.24□□□□□ -1.41
USP3-210ENST00000559192 DDA1Q9BW61 102 aa6.24□□□□□ -1.41
USP3-210ENST00000559192 MRPL13Q9BYD1 178 aaKnown RBP6.24□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms