RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 RCC2Q9P258 522 aaKnown RBP7.99□□□□□ -1.13
CUX1-216ENST00000558469 EXTL2Q9UBQ6 330 aa7.99□□□□□ -1.13
CUX1-216ENST00000558469 SLC25A10Q9UBX3 287 aaPredicted RBP7.99□□□□□ -1.13
CUX1-216ENST00000558469 HSF4Q9ULV5 492 aa7.99□□□□□ -1.13
CUX1-216ENST00000558469 ABCA2Q9BZC7 2435 aa7.99□□□□□ -1.13
CUX1-216ENST00000558469 F5H0A9 414 aaPredicted RBP7.98□□□□□ -1.13
CUX1-216ENST00000558469 GLAP06280 429 aa7.98□□□□□ -1.13
CUX1-216ENST00000558469 HEXAP06865 529 aa7.98□□□□□ -1.13
CUX1-216ENST00000558469 USF1P22415 310 aaPredicted RBP7.98□□□□□ -1.13
CUX1-216ENST00000558469 IL2RGP31785 369 aa7.98□□□□□ -1.13
CUX1-216ENST00000558469 TAS2R20P59543 309 aa7.98□□□□□ -1.13
CUX1-216ENST00000558469 GNB2P62879 340 aa7.98□□□□□ -1.13
CUX1-216ENST00000558469 AESQ08117 197 aa7.98□□□□□ -1.13
CUX1-216ENST00000558469 EDDM3AQ14507 147 aa7.98□□□□□ -1.13
CUX1-216ENST00000558469 C4orf48Q5BLP8 95 aa7.98□□□□□ -1.13
CUX1-216ENST00000558469 OLFML2AQ68BL7 652 aa7.98□□□□□ -1.13
CUX1-216ENST00000558469 ZNF841Q6ZN19 808 aa7.98□□□□□ -1.13
CUX1-216ENST00000558469 GDPD3Q7L5L3 318 aa7.98□□□□□ -1.13
CUX1-216ENST00000558469 OR8H2Q8N162 312 aa7.98□□□□□ -1.13
CUX1-216ENST00000558469 WFDC11Q8NEX6 87 aa7.98□□□□□ -1.13
CUX1-216ENST00000558469 OR6Q1Q8NGQ2 317 aa7.98□□□□□ -1.13
CUX1-216ENST00000558469 PPP1R35Q8TAP8 253 aa7.98□□□□□ -1.13
CUX1-216ENST00000558469 PLPPR1Q8TBJ4 325 aa7.98□□□□□ -1.13
CUX1-216ENST00000558469 H1FXQ92522 213 aaKnown RBP7.98□□□□□ -1.13
CUX1-216ENST00000558469 DYRK2Q92630 601 aa7.98□□□□□ -1.13
CUX1-216ENST00000558469 RAB39BQ96DA2 213 aa7.98□□□□□ -1.13
CUX1-216ENST00000558469 WDFY2Q96P53 400 aa7.98□□□□□ -1.13
CUX1-216ENST00000558469 NUDT16L1Q9BRJ7 211 aaKnown RBP7.98□□□□□ -1.13
CUX1-216ENST00000558469 REG4Q9BYZ8 158 aa7.98□□□□□ -1.13
CUX1-216ENST00000558469 ETAA1Q9NY74 926 aa7.98□□□□□ -1.13
CUX1-216ENST00000558469 CLN8Q9UBY8 286 aa7.98□□□□□ -1.13
CUX1-216ENST00000558469 AK3Q9UIJ7 227 aa7.98□□□□□ -1.13
CUX1-216ENST00000558469 ELF5Q9UKW6 265 aaPredicted RBP7.98□□□□□ -1.13
CUX1-216ENST00000558469 MRPS7Q9Y2R9 242 aaKnown RBP7.98□□□□□ -1.13
CUX1-216ENST00000558469 KCNK7Q9Y2U2 307 aa7.98□□□□□ -1.13
CUX1-216ENST00000558469 CCDC168Q8NDH2 2452 aa7.97□□□□□ -1.13
CUX1-216ENST00000558469 ITPR3Q14573 2671 aa7.97□□□□□ -1.13
CUX1-216ENST00000558469 MALRD1Q5VYJ5 2156 aa7.97□□□□□ -1.13
CUX1-216ENST00000558469 A0A0G2JMP0 313 aa7.97□□□□□ -1.13
CUX1-216ENST00000558469 A0A0X1KG70 313 aa7.97□□□□□ -1.13
CUX1-216ENST00000558469 TMEM235A6NFC5 223 aa7.97□□□□□ -1.13
CUX1-216ENST00000558469 FABP12A6NFH5 140 aa7.97□□□□□ -1.13
CUX1-216ENST00000558469 MFNGO00587 321 aa7.97□□□□□ -1.13
CUX1-216ENST00000558469 MGST3O14880 152 aa7.97□□□□□ -1.13
CUX1-216ENST00000558469 PHF1O43189 567 aaPredicted RBP7.97□□□□□ -1.13
CUX1-216ENST00000558469 CSN2P05814 226 aa7.97□□□□□ -1.13
CUX1-216ENST00000558469 GSTP1P09211 210 aaKnown RBP7.97□□□□□ -1.13
CUX1-216ENST00000558469 PTHLHP12272 177 aa7.97□□□□□ -1.13
CUX1-216ENST00000558469 HIST1H1DP16402 221 aaKnown RBP7.97□□□□□ -1.13
CUX1-216ENST00000558469 MNDAP41218 407 aa7.97□□□□□ -1.13
CUX1-216ENST00000558469 GLIPR1P48060 266 aa7.97□□□□□ -1.13
CUX1-216ENST00000558469 NPY4RP50391 375 aa7.97□□□□□ -1.13
CUX1-216ENST00000558469 EDDM3BP56851 147 aa7.97□□□□□ -1.13
CUX1-216ENST00000558469 ARFRP1Q13795 201 aa7.97□□□□□ -1.13
CUX1-216ENST00000558469 IL18Q14116 193 aa7.97□□□□□ -1.13
CUX1-216ENST00000558469 ARL6IP1Q15041 203 aa7.97□□□□□ -1.13
CUX1-216ENST00000558469 ZNF260Q3ZCT1 412 aa7.97□□□□□ -1.13
CUX1-216ENST00000558469 ESCO2Q56NI9 601 aa7.97□□□□□ -1.13
CUX1-216ENST00000558469 KRBOX4Q5JUW0 171 aa7.97□□□□□ -1.13
CUX1-216ENST00000558469 WDR25Q64LD2 544 aaPredicted RBP7.97□□□□□ -1.13
CUX1-216ENST00000558469 FAM131AQ6UXB0 335 aa7.97□□□□□ -1.13
CUX1-216ENST00000558469 TPRX1Q8N7U7 411 aa7.97□□□□□ -1.13
CUX1-216ENST00000558469 MAPK1IP1LQ8NDC0 245 aa7.97□□□□□ -1.13
CUX1-216ENST00000558469 OR4M2Q8NGB6 313 aa7.97□□□□□ -1.13
CUX1-216ENST00000558469 COQ2Q96H96 371 aa7.97□□□□□ -1.13
CUX1-216ENST00000558469 SSBP3Q9BWW4 388 aaPredicted RBP7.97□□□□□ -1.13
CUX1-216ENST00000558469 AUNIPQ9H7T9 357 aa7.97□□□□□ -1.13
CUX1-216ENST00000558469 AKAP9Q99996 3911 aa7.97□□□□□ -1.13
CUX1-216ENST00000558469 A0A096LNT2 108 aa7.96□□□□□ -1.14
CUX1-216ENST00000558469 SERPINE3A8MV23 424 aa7.96□□□□□ -1.14
CUX1-216ENST00000558469 HLA-DQB1P01920 261 aa7.96□□□□□ -1.14
CUX1-216ENST00000558469 CD3GP09693 182 aa7.96□□□□□ -1.14
CUX1-216ENST00000558469 KCNJ3P48549 501 aa7.96□□□□□ -1.14
CUX1-216ENST00000558469 LCN2P80188 198 aa7.96□□□□□ -1.14
CUX1-216ENST00000558469 MRPS15P82914 257 aaKnown RBP7.96□□□□□ -1.14
CUX1-216ENST00000558469 LOXL1Q08397 574 aaPredicted RBP7.96□□□□□ -1.14
CUX1-216ENST00000558469 SPANXN2Q5MJ10 180 aa7.96□□□□□ -1.14
CUX1-216ENST00000558469 HACD4Q5VWC8 232 aa7.96□□□□□ -1.14
CUX1-216ENST00000558469 RSBN1Q5VWQ0 802 aaPredicted RBP7.96□□□□□ -1.14
CUX1-216ENST00000558469 SLC35E4Q6ICL7 350 aa7.96□□□□□ -1.14
CUX1-216ENST00000558469 BAIAP2L2Q6UXY1 529 aa7.96□□□□□ -1.14
CUX1-216ENST00000558469 ZNF497Q6ZNH5 498 aa7.96□□□□□ -1.14
CUX1-216ENST00000558469 BTN2A1Q7KYR7 527 aa7.96□□□□□ -1.14
CUX1-216ENST00000558469 CCDC190Q86UF4 302 aa7.96□□□□□ -1.14
CUX1-216ENST00000558469 SNX29P2Q8IUI4 249 aa7.96□□□□□ -1.14
CUX1-216ENST00000558469 CCDC107Q8WV48 283 aa7.96□□□□□ -1.14
CUX1-216ENST00000558469 GCDHQ92947 438 aaPredicted RBP7.96□□□□□ -1.14
CUX1-216ENST00000558469 CMSS1Q9BQ75 279 aaKnown RBP7.96□□□□□ -1.14
CUX1-216ENST00000558469 HDHD3Q9BSH5 251 aaPredicted RBP7.96□□□□□ -1.14
CUX1-216ENST00000558469 CHMP1AQ9HD42 196 aaPredicted RBP7.96□□□□□ -1.14
CUX1-216ENST00000558469 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP7.96□□□□□ -1.143e-6■■□□□ 13.5
CUX1-216ENST00000558469 KIF25Q9UIL4 384 aa7.96□□□□□ -1.14
CUX1-216ENST00000558469 MYO9AB2RTY4 2548 aa7.96□□□□□ -1.14
CUX1-216ENST00000558469 MED13LQ71F56 2210 aa7.95□□□□□ -1.14
CUX1-216ENST00000558469 WNK2Q9Y3S1 2297 aa7.95□□□□□ -1.14
CUX1-216ENST00000558469 LOC105371242A0A075B767 164 aa7.95□□□□□ -1.14
CUX1-216ENST00000558469 MEIKINA0A087WXM9 373 aa7.95□□□□□ -1.14
CUX1-216ENST00000558469 TRAV39A0A0B4J263 110 aa7.95□□□□□ -1.14
CUX1-216ENST00000558469 A0A1W2PQ09 198 aa7.95□□□□□ -1.14
CUX1-216ENST00000558469 TMEM30CPA0ZSE6 113 aa7.95□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms