RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 BAXQ07812 192 aa9.45□□□□□ -0.9
USP3-206ENST00000558157 SGCBQ16585 318 aa9.45□□□□□ -0.9
USP3-206ENST00000558157 ACSF3Q4G176 576 aaPredicted RBP9.45□□□□□ -0.9
USP3-206ENST00000558157 FNDC7Q5VTL7 733 aa9.45□□□□□ -0.9
USP3-206ENST00000558157 DNM1P34Q6PK57 102 aa9.45□□□□□ -0.9
USP3-206ENST00000558157 ZNF705AQ6ZN79 300 aaPredicted RBP9.45□□□□□ -0.9
USP3-206ENST00000558157 HIST2H2ABQ8IUE6 130 aaPredicted RBP9.45□□□□□ -0.9
USP3-206ENST00000558157 OR4C3Q8NH37 302 aa9.45□□□□□ -0.9
USP3-206ENST00000558157 ADAT3Q96EY9 351 aaPredicted RBP9.45□□□□□ -0.9
USP3-206ENST00000558157 BTF3L4Q96K17 158 aa9.45□□□□□ -0.9
USP3-206ENST00000558157 AGMATQ9BSE5 352 aa9.45□□□□□ -0.9
USP3-206ENST00000558157 VN1R1Q9GZP7 353 aa9.45□□□□□ -0.9
USP3-206ENST00000558157 PLEKHF2Q9H8W4 249 aa9.45□□□□□ -0.9
USP3-206ENST00000558157 GAB2Q9UQC2 676 aa9.45□□□□□ -0.9
USP3-206ENST00000558157 SEC16AO15027 2179 aa9.45□□□□□ -0.9
USP3-206ENST00000558157 MED19A0JLT2 244 aaPredicted RBP9.45□□□□□ -0.9
USP3-206ENST00000558157 XRCC2O43543 280 aa9.45□□□□□ -0.9
USP3-206ENST00000558157 TNFSF13O75888 250 aa9.45□□□□□ -0.9
USP3-206ENST00000558157 MT-CO3P00414 261 aa9.45□□□□□ -0.9
USP3-206ENST00000558157 UMODP07911 640 aa9.45□□□□□ -0.9
USP3-206ENST00000558157 MMP7P09237 267 aaPredicted RBP9.45□□□□□ -0.9
USP3-206ENST00000558157 IRF2P14316 349 aa9.45□□□□□ -0.9
USP3-206ENST00000558157 CTLA4P16410 223 aa9.45□□□□□ -0.9
USP3-206ENST00000558157 RAB11AP62491 216 aa9.45□□□□□ -0.9
USP3-206ENST00000558157 ACTL10Q5JWF8 245 aa9.45□□□□□ -0.9
USP3-206ENST00000558157 HES3Q5TGS1 186 aa9.45□□□□□ -0.9
USP3-206ENST00000558157 LIAT1Q6ZQX7 453 aa9.45□□□□□ -0.9
USP3-206ENST00000558157 GRINAQ7Z429 371 aa9.45□□□□□ -0.9
USP3-206ENST00000558157 CMTM1Q8IZ96 169 aa9.45□□□□□ -0.9
USP3-206ENST00000558157 LGI3Q8N145 548 aa9.45□□□□□ -0.9
USP3-206ENST00000558157 THOC3Q96J01 351 aaKnown RBP9.45□□□□□ -0.9
USP3-206ENST00000558157 OR5B12Q96R08 314 aa9.45□□□□□ -0.9
USP3-206ENST00000558157 DIRC2Q96SL1 478 aa9.45□□□□□ -0.9
USP3-206ENST00000558157 ZNF2Q9BSG1 426 aaPredicted RBP9.45□□□□□ -0.9
USP3-206ENST00000558157 GSX1Q9H4S2 264 aaPredicted RBP9.45□□□□□ -0.9
USP3-206ENST00000558157 C11orf1Q9H5F2 150 aa9.45□□□□□ -0.9
USP3-206ENST00000558157 MOB1AQ9H8S9 216 aa9.45□□□□□ -0.9
USP3-206ENST00000558157 Q9N2K0 584 aa9.45□□□□□ -0.9
USP3-206ENST00000558157 PNO1Q9NRX1 252 aaKnown RBP9.45□□□□□ -0.9
USP3-206ENST00000558157 FAM206AQ9NX38 181 aa9.45□□□□□ -0.9
USP3-206ENST00000558157 RCL1Q9Y2P8 373 aaKnown RBP9.45□□□□□ -0.9
USP3-206ENST00000558157 IGLV3-12A0A075B6K2 115 aa9.44□□□□□ -0.9
USP3-206ENST00000558157 TRAV36DV7A0A075B6V5 113 aa9.44□□□□□ -0.9
USP3-206ENST00000558157 A6NNC1 897 aa9.44□□□□□ -0.9
USP3-206ENST00000558157 FOXI3A8MTJ6 420 aaPredicted RBP9.44□□□□□ -0.9
USP3-206ENST00000558157 TSPAN2O60636 221 aa9.44□□□□□ -0.9
USP3-206ENST00000558157 AHSA1O95433 338 aa9.44□□□□□ -0.9
USP3-206ENST00000558157 DIRAS3O95661 229 aa9.44□□□□□ -0.9
USP3-206ENST00000558157 CDS2O95674 445 aa9.44□□□□□ -0.9
USP3-206ENST00000558157 TYMSP04818 313 aa9.44□□□□□ -0.9
USP3-206ENST00000558157 H2BFMP0C1H6 154 aa9.44□□□□□ -0.9
USP3-206ENST00000558157 BCL2P10415 239 aa9.44□□□□□ -0.9
USP3-206ENST00000558157 ZNF20P17024 532 aa9.44□□□□□ -0.9
USP3-206ENST00000558157 ACKR1Q16570 336 aa9.44□□□□□ -0.9
USP3-206ENST00000558157 NUFIP2Q7Z417 695 aaKnown RBP9.44□□□□□ -0.9
USP3-206ENST00000558157 RTN4RL2Q86UN3 420 aa9.44□□□□□ -0.9
USP3-206ENST00000558157 CISD2Q8N5K1 135 aaKnown RBP9.44□□□□□ -0.9
USP3-206ENST00000558157 OR4D5Q8NGN0 318 aa9.44□□□□□ -0.9
USP3-206ENST00000558157 RNF133Q8WVZ7 376 aa9.44□□□□□ -0.9
USP3-206ENST00000558157 LIN37Q96GY3 246 aaPredicted RBP9.44□□□□□ -0.9
USP3-206ENST00000558157 GAL3ST4Q96RP7 486 aa9.44□□□□□ -0.9
USP3-206ENST00000558157 ABHD14AQ9BUJ0 271 aa9.44□□□□□ -0.9
USP3-206ENST00000558157 AKIRIN1Q9H9L7 192 aaPredicted RBP9.44□□□□□ -0.9
USP3-206ENST00000558157 MSL2Q9HCI7 577 aa9.44□□□□□ -0.9
USP3-206ENST00000558157 B3GALT1Q9Y5Z6 326 aa9.44□□□□□ -0.9
USP3-206ENST00000558157 A0A1W2PN81 502 aa9.44□□□□□ -0.9
USP3-206ENST00000558157 C17orf105B2RV13 164 aa9.44□□□□□ -0.9
USP3-206ENST00000558157 ONECUT2O95948 504 aa9.44□□□□□ -0.9
USP3-206ENST00000558157 TTRP02766 147 aa9.44□□□□□ -0.9
USP3-206ENST00000558157 MMP9P14780 707 aa9.44□□□□□ -0.9
USP3-206ENST00000558157 CHRNA7P36544 502 aa9.44□□□□□ -0.9
USP3-206ENST00000558157 SLC6A8P48029 635 aa9.44□□□□□ -0.9
USP3-206ENST00000558157 PIGPP57054 158 aa9.44□□□□□ -0.9
USP3-206ENST00000558157 P2RY6Q15077 328 aa9.44□□□□□ -0.9
USP3-206ENST00000558157 ZNF880Q6PDB4 577 aa9.44□□□□□ -0.9
USP3-206ENST00000558157 KLHL24Q6TFL4 600 aa9.44□□□□□ -0.9
USP3-206ENST00000558157 SSX7Q7RTT5 188 aa9.44□□□□□ -0.9
USP3-206ENST00000558157 ASCL5Q7RTU5 278 aa9.44□□□□□ -0.9
USP3-206ENST00000558157 BCORP1Q8N888 145 aa9.44□□□□□ -0.9
USP3-206ENST00000558157 OR51G1Q8NGK1 321 aa9.44□□□□□ -0.9
USP3-206ENST00000558157 GPR119Q8TDV5 335 aa9.44□□□□□ -0.9
USP3-206ENST00000558157 DAZLQ92904 295 aaKnown RBP9.44□□□□□ -0.9
USP3-206ENST00000558157 OR2J1Q9GZK6 312 aa9.44□□□□□ -0.9
USP3-206ENST00000558157 NAT8Q9UHE5 227 aa9.44□□□□□ -0.9
USP3-206ENST00000558157 YLPM1P49750 1951 aaKnown RBP9.44□□□□□ -0.9
USP3-206ENST00000558157 SPAARA0A1B0GVQ0 90 aa9.43□□□□□ -0.9
USP3-206ENST00000558157 A0A1W2PNU3 283 aaPredicted RBP9.43□□□□□ -0.9
USP3-206ENST00000558157 ZNF878C9JN71 531 aa9.43□□□□□ -0.9
USP3-206ENST00000558157 K7EP13 123 aa9.43□□□□□ -0.9
USP3-206ENST00000558157 CLPSP04118 112 aa9.43□□□□□ -0.9
USP3-206ENST00000558157 ELLP55199 621 aaPredicted RBP9.43□□□□□ -0.9
USP3-206ENST00000558157 SRPXP78539 464 aa9.43□□□□□ -0.9
USP3-206ENST00000558157 OR5I1Q13606 314 aa9.43□□□□□ -0.9
USP3-206ENST00000558157 NSDHLQ15738 373 aa9.43□□□□□ -0.9
USP3-206ENST00000558157 LEMD1Q68G75 181 aa9.43□□□□□ -0.9
USP3-206ENST00000558157 OR51B6Q9H340 312 aa9.43□□□□□ -0.9
USP3-206ENST00000558157 PLK3Q9H4B4 646 aa9.43□□□□□ -0.9
USP3-206ENST00000558157 RNF150Q9ULK6 438 aa9.43□□□□□ -0.9
USP3-206ENST00000558157 LAMP3Q9UQV4 416 aa9.43□□□□□ -0.9
USP3-206ENST00000558157 ZNF292O60281 2723 aa9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms