RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 RAB11BQ15907 218 aa11.13□□□□□ -0.63
SHMT2-228ENST00000557302 ATAD3CQ5T2N8 411 aa11.13□□□□□ -0.63
SHMT2-228ENST00000557302 TCF23Q7RTU1 214 aa11.13□□□□□ -0.63
SHMT2-228ENST00000557302 SIGLECL1Q8N7X8 197 aa11.13□□□□□ -0.63
SHMT2-228ENST00000557302 FAM46BQ96A09 425 aa11.13□□□□□ -0.63
SHMT2-228ENST00000557302 COQ2Q96H96 371 aa11.13□□□□□ -0.63
SHMT2-228ENST00000557302 JMJD8Q96S16 334 aa11.13□□□□□ -0.63
SHMT2-228ENST00000557302 BARHL1Q9BZE3 327 aa11.13□□□□□ -0.63
SHMT2-228ENST00000557302 HEXA-AS1Q9H8Q6 139 aa11.13□□□□□ -0.63
SHMT2-228ENST00000557302 SPACA1Q9HBV2 294 aa11.13□□□□□ -0.63
SHMT2-228ENST00000557302 ZNF581Q9P0T4 197 aa11.13□□□□□ -0.63
SHMT2-228ENST00000557302 SSR3Q9UNL2 185 aa11.13□□□□□ -0.63
SHMT2-228ENST00000557302 UBE2J1Q9Y385 318 aaPredicted RBP11.13□□□□□ -0.63
SHMT2-228ENST00000557302 SOX21Q9Y651 276 aaPredicted RBP11.13□□□□□ -0.63
SHMT2-228ENST00000557302 V9GY05 133 aa11.13□□□□□ -0.63
SHMT2-228ENST00000557302 FBN3Q75N90 2809 aa11.13□□□□□ -0.63
SHMT2-228ENST00000557302 FAM90A10PA6NDY2 464 aa11.12□□□□□ -0.63
SHMT2-228ENST00000557302 FAM90A18PA6NE21 464 aa11.12□□□□□ -0.63
SHMT2-228ENST00000557302 FAM90A16PA6NEW6 464 aa11.12□□□□□ -0.63
SHMT2-228ENST00000557302 FAM90A20PA6NIJ5 464 aa11.12□□□□□ -0.63
SHMT2-228ENST00000557302 FAM90A8PA6NJQ4 464 aa11.12□□□□□ -0.63
SHMT2-228ENST00000557302 FAM90A7PA6NKC0 464 aa11.12□□□□□ -0.63
SHMT2-228ENST00000557302 FAM90A22PA8MWA6 464 aa11.12□□□□□ -0.63
SHMT2-228ENST00000557302 FAM90A12PA8MX19 464 aa11.12□□□□□ -0.63
SHMT2-228ENST00000557302 FAM90A5PA8MXJ8 464 aa11.12□□□□□ -0.63
SHMT2-228ENST00000557302 FAM90A23PA8MXZ1 464 aa11.12□□□□□ -0.63
SHMT2-228ENST00000557302 BPNT1O95861 308 aa11.12□□□□□ -0.63
SHMT2-228ENST00000557302 MPIG6BO95866 241 aa11.12□□□□□ -0.63
SHMT2-228ENST00000557302 FAM90A15PP0C7V4 464 aa11.12□□□□□ -0.63
SHMT2-228ENST00000557302 FAM90A13PP0C7W8 464 aa11.12□□□□□ -0.63
SHMT2-228ENST00000557302 FAM90A14PP0C7W9 464 aa11.12□□□□□ -0.63
SHMT2-228ENST00000557302 FAM90A24PP0C7X0 464 aa11.12□□□□□ -0.63
SHMT2-228ENST00000557302 VSIG8P0DPA2 414 aa11.12□□□□□ -0.63
SHMT2-228ENST00000557302 CD36P16671 472 aa11.12□□□□□ -0.63
SHMT2-228ENST00000557302 FGF9P31371 208 aaPredicted RBP11.12□□□□□ -0.63
SHMT2-228ENST00000557302 RANBP1P43487 201 aa11.12□□□□□ -0.63
SHMT2-228ENST00000557302 UBE2E1P51965 193 aa11.12□□□□□ -0.63
SHMT2-228ENST00000557302 P2RY14Q15391 338 aa11.12□□□□□ -0.63
SHMT2-228ENST00000557302 TUSC1Q2TAM9 212 aa11.12□□□□□ -0.63
SHMT2-228ENST00000557302 ZNF782Q6ZMW2 699 aaPredicted RBP11.12□□□□□ -0.63
SHMT2-228ENST00000557302 C11orf42Q8N5U0 333 aa11.12□□□□□ -0.63
SHMT2-228ENST00000557302 KCNG3Q8TAE7 436 aa11.12□□□□□ -0.63
SHMT2-228ENST00000557302 NEK7Q8TDX7 302 aa11.12□□□□□ -0.63
SHMT2-228ENST00000557302 SLC25A28Q96A46 364 aa11.12□□□□□ -0.63
SHMT2-228ENST00000557302 Q96M66 194 aa11.12□□□□□ -0.63
SHMT2-228ENST00000557302 TMEM59Q9BXS4 323 aa11.12□□□□□ -0.63
SHMT2-228ENST00000557302 GAL3ST2Q9H3Q3 398 aa11.12□□□□□ -0.63
SHMT2-228ENST00000557302 TXNL4BQ9NX01 149 aaKnown RBP11.12□□□□□ -0.63
SHMT2-228ENST00000557302 OR6C3Q9NZP0 311 aa11.12□□□□□ -0.63
SHMT2-228ENST00000557302 MEIKINA0A087WXM9 373 aa11.11□□□□□ -0.63
SHMT2-228ENST00000557302 A0A1W2PRD5 423 aa11.11□□□□□ -0.63
SHMT2-228ENST00000557302 A0A1W2PRF3 423 aa11.11□□□□□ -0.63
SHMT2-228ENST00000557302 A0A1W2PRM7 423 aa11.11□□□□□ -0.63
SHMT2-228ENST00000557302 SHISA3A0PJX4 238 aa11.11□□□□□ -0.63
SHMT2-228ENST00000557302 H3BUI4 141 aa11.11□□□□□ -0.63
SHMT2-228ENST00000557302 NPFFO15130 113 aa11.11□□□□□ -0.63
SHMT2-228ENST00000557302 CLPXO76031 633 aa11.11□□□□□ -0.63
SHMT2-228ENST00000557302 ARSBP15848 533 aa11.11□□□□□ -0.63
SHMT2-228ENST00000557302 RAB3BP20337 219 aa11.11□□□□□ -0.63
SHMT2-228ENST00000557302 COX7A1P24310 79 aa11.11□□□□□ -0.63
SHMT2-228ENST00000557302 RPS27AP62979 156 aaKnown RBP11.11□□□□□ -0.63
SHMT2-228ENST00000557302 SRSF2Q01130 221 aaKnown RBP11.11□□□□□ -0.63
SHMT2-228ENST00000557302 PAX5Q02548 391 aa11.11□□□□□ -0.63
SHMT2-228ENST00000557302 DEFB112Q30KQ8 113 aa11.11□□□□□ -0.63
SHMT2-228ENST00000557302 OR10K2Q6IF99 312 aa11.11□□□□□ -0.63
SHMT2-228ENST00000557302 PLPPR1Q8TBJ4 325 aa11.11□□□□□ -0.63
SHMT2-228ENST00000557302 CORO2AQ92828 525 aa11.11□□□□□ -0.63
SHMT2-228ENST00000557302 ZDHHC16Q969W1 377 aa11.11□□□□□ -0.63
SHMT2-228ENST00000557302 ZNF48Q96MX3 618 aaPredicted RBP11.11□□□□□ -0.63
SHMT2-228ENST00000557302 OR51E2Q9H255 320 aa11.11□□□□□ -0.63
SHMT2-228ENST00000557302 NCOR1P1Q9H4R4 102 aa11.11□□□□□ -0.63
SHMT2-228ENST00000557302 TAS2R3Q9NYW6 316 aa11.11□□□□□ -0.63
SHMT2-228ENST00000557302 RCC2Q9P258 522 aaKnown RBP11.11□□□□□ -0.63
SHMT2-228ENST00000557302 KIF25Q9UIL4 384 aa11.11□□□□□ -0.63
SHMT2-228ENST00000557302 MDFIC2A0A1B0GVS7 189 aa11.1□□□□□ -0.63
SHMT2-228ENST00000557302 TRIM64CA6NLI5 447 aa11.1□□□□□ -0.63
SHMT2-228ENST00000557302 TMEM14DPA8MWL7 114 aa11.1□□□□□ -0.63
SHMT2-228ENST00000557302 MCRIP1C9JLW8 97 aa11.1□□□□□ -0.63
SHMT2-228ENST00000557302 VENTXO95231 258 aa11.1□□□□□ -0.63
SHMT2-228ENST00000557302 IGHV1-8P0DP01 117 aa11.1□□□□□ -0.63
SHMT2-228ENST00000557302 FUT3P21217 361 aa11.1□□□□□ -0.63
SHMT2-228ENST00000557302 GADD45AP24522 165 aa11.1□□□□□ -0.63
SHMT2-228ENST00000557302 GLP1RP43220 463 aa11.1□□□□□ -0.63
SHMT2-228ENST00000557302 OR10A3P58181 314 aa11.1□□□□□ -0.63
SHMT2-228ENST00000557302 BAMBIQ13145 260 aa11.1□□□□□ -0.63
SHMT2-228ENST00000557302 UNC119Q13432 240 aa11.1□□□□□ -0.63
SHMT2-228ENST00000557302 RBM39Q14498 530 aaKnown RBP11.1□□□□□ -0.63
SHMT2-228ENST00000557302 HES5Q5TA89 166 aa11.1□□□□□ -0.63
SHMT2-228ENST00000557302 RSBN1Q5VWQ0 802 aaPredicted RBP11.1□□□□□ -0.63
SHMT2-228ENST00000557302 RAB12Q6IQ22 244 aa11.1□□□□□ -0.63
SHMT2-228ENST00000557302 HCP5Q6MZN7 132 aa11.1□□□□□ -0.63
SHMT2-228ENST00000557302 OR2W3Q7Z3T1 314 aa11.1□□□□□ -0.63
SHMT2-228ENST00000557302 PNKDQ8N490 385 aa11.1□□□□□ -0.63
SHMT2-228ENST00000557302 OR13D1Q8NGV5 346 aa11.1□□□□□ -0.63
SHMT2-228ENST00000557302 FAM3DQ96BQ1 224 aa11.1□□□□□ -0.63
SHMT2-228ENST00000557302 KCTD7Q96MP8 289 aa11.1□□□□□ -0.63
SHMT2-228ENST00000557302 CHCHD6Q9BRQ6 235 aa11.1□□□□□ -0.63
SHMT2-228ENST00000557302 KCNK15Q9H427 330 aa11.1□□□□□ -0.63
SHMT2-228ENST00000557302 FAM96BQ9Y3D0 163 aa11.1□□□□□ -0.63
SHMT2-228ENST00000557302 PEX16Q9Y5Y5 336 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms