RNA–Protein interactions for RNA: ENST00000556767.1

CCDC88C-212, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 676 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-212ENST00000556767 MCRIP1C9JLW8 97 aa9.39□□□□□ -0.91
CCDC88C-212ENST00000556767 TCF21O43680 179 aa9.39□□□□□ -0.91
CCDC88C-212ENST00000556767 CSN2P05814 226 aa9.39□□□□□ -0.91
CCDC88C-212ENST00000556767 PRTN3P24158 256 aa9.39□□□□□ -0.91
CCDC88C-212ENST00000556767 RANBP1P43487 201 aa9.39□□□□□ -0.91
CCDC88C-212ENST00000556767 KCNJ3P48549 501 aa9.39□□□□□ -0.91
CCDC88C-212ENST00000556767 SRSF2Q01130 221 aaKnown RBP9.39□□□□□ -0.91
CCDC88C-212ENST00000556767 GUCA2AQ02747 115 aa9.39□□□□□ -0.91
CCDC88C-212ENST00000556767 RBM39Q14498 530 aaKnown RBP9.39□□□□□ -0.91
CCDC88C-212ENST00000556767 TIMM50Q3ZCQ8 353 aa9.39□□□□□ -0.91
CCDC88C-212ENST00000556767 RAB12Q6IQ22 244 aa9.39□□□□□ -0.91
CCDC88C-212ENST00000556767 TCF23Q7RTU1 214 aa9.39□□□□□ -0.91
CCDC88C-212ENST00000556767 SIGLECL1Q8N7X8 197 aa9.39□□□□□ -0.91
CCDC88C-212ENST00000556767 OR51D1Q8NGF3 324 aa9.39□□□□□ -0.91
CCDC88C-212ENST00000556767 ZDHHC16Q969W1 377 aa9.39□□□□□ -0.91
CCDC88C-212ENST00000556767 SLC25A28Q96A46 364 aa9.39□□□□□ -0.91
CCDC88C-212ENST00000556767 FAM3DQ96BQ1 224 aa9.39□□□□□ -0.91
CCDC88C-212ENST00000556767 COQ2Q96H96 371 aa9.39□□□□□ -0.91
CCDC88C-212ENST00000556767 SUCNR1Q9BXA5 334 aa9.39□□□□□ -0.91
CCDC88C-212ENST00000556767 HEXA-AS1Q9H8Q6 139 aa9.39□□□□□ -0.91
CCDC88C-212ENST00000556767 SPACA1Q9HBV2 294 aa9.39□□□□□ -0.91
CCDC88C-212ENST00000556767 KIF25Q9UIL4 384 aa9.39□□□□□ -0.91
CCDC88C-212ENST00000556767 UBE2J1Q9Y385 318 aaPredicted RBP9.39□□□□□ -0.91
CCDC88C-212ENST00000556767 PEX16Q9Y5Y5 336 aa9.39□□□□□ -0.91
CCDC88C-212ENST00000556767 LINC00312Q9Y6C7 94 aa9.39□□□□□ -0.91
CCDC88C-212ENST00000556767 NAV3Q8IVL0 2385 aa9.38□□□□□ -0.91
CCDC88C-212ENST00000556767 TMEM30CPA0ZSE6 113 aa9.38□□□□□ -0.91
CCDC88C-212ENST00000556767 FAM90A10PA6NDY2 464 aa9.38□□□□□ -0.91
CCDC88C-212ENST00000556767 FAM90A18PA6NE21 464 aa9.38□□□□□ -0.91
CCDC88C-212ENST00000556767 FAM90A16PA6NEW6 464 aa9.38□□□□□ -0.91
CCDC88C-212ENST00000556767 FAM90A20PA6NIJ5 464 aa9.38□□□□□ -0.91
CCDC88C-212ENST00000556767 FAM90A8PA6NJQ4 464 aa9.38□□□□□ -0.91
CCDC88C-212ENST00000556767 FAM90A7PA6NKC0 464 aa9.38□□□□□ -0.91
CCDC88C-212ENST00000556767 C17orf98A8MV24 154 aa9.38□□□□□ -0.91
CCDC88C-212ENST00000556767 FAM90A22PA8MWA6 464 aa9.38□□□□□ -0.91
CCDC88C-212ENST00000556767 FAM90A12PA8MX19 464 aa9.38□□□□□ -0.91
CCDC88C-212ENST00000556767 FAM90A5PA8MXJ8 464 aa9.38□□□□□ -0.91
CCDC88C-212ENST00000556767 FAM90A23PA8MXZ1 464 aa9.38□□□□□ -0.91
CCDC88C-212ENST00000556767 RNASEK-C17orf49H0YIS7 233 aa9.38□□□□□ -0.91
CCDC88C-212ENST00000556767 H3BUI4 141 aa9.38□□□□□ -0.91
CCDC88C-212ENST00000556767 AIREO43918 545 aa9.38□□□□□ -0.91
CCDC88C-212ENST00000556767 FAM90A15PP0C7V4 464 aa9.38□□□□□ -0.91
CCDC88C-212ENST00000556767 FAM90A13PP0C7W8 464 aa9.38□□□□□ -0.91
CCDC88C-212ENST00000556767 FAM90A14PP0C7W9 464 aa9.38□□□□□ -0.91
CCDC88C-212ENST00000556767 FAM90A24PP0C7X0 464 aa9.38□□□□□ -0.91
CCDC88C-212ENST00000556767 CD37P11049 281 aa9.38□□□□□ -0.91
CCDC88C-212ENST00000556767 JUNBP17275 347 aaPredicted RBP9.38□□□□□ -0.91
CCDC88C-212ENST00000556767 GLP1RP43220 463 aa9.38□□□□□ -0.91
CCDC88C-212ENST00000556767 DLX6P56179 175 aa9.38□□□□□ -0.91
CCDC88C-212ENST00000556767 BPIFB3P59826 476 aa9.38□□□□□ -0.91
CCDC88C-212ENST00000556767 RPS27AP62979 156 aaKnown RBP9.38□□□□□ -0.91
CCDC88C-212ENST00000556767 MXD1Q05195 221 aa9.38□□□□□ -0.91
CCDC88C-212ENST00000556767 UNC119Q13432 240 aa9.38□□□□□ -0.91
CCDC88C-212ENST00000556767 C2orf76Q3KRA6 126 aa9.38□□□□□ -0.91
CCDC88C-212ENST00000556767 OR2W3Q7Z3T1 314 aa9.38□□□□□ -0.91
CCDC88C-212ENST00000556767 PNKDQ8N490 385 aa9.38□□□□□ -0.91
CCDC88C-212ENST00000556767 PLPPR1Q8TBJ4 325 aa9.38□□□□□ -0.91
CCDC88C-212ENST00000556767 Q96M66 194 aa9.38□□□□□ -0.91
CCDC88C-212ENST00000556767 NEDD4LQ96PU5 975 aa9.38□□□□□ -0.91
CCDC88C-212ENST00000556767 URM1Q9BTM9 101 aaKnown RBP9.38□□□□□ -0.91
CCDC88C-212ENST00000556767 CENPOQ9BU64 300 aa9.38□□□□□ -0.91
CCDC88C-212ENST00000556767 GAL3ST2Q9H3Q3 398 aa9.38□□□□□ -0.91
CCDC88C-212ENST00000556767 RNF167Q9H6Y7 350 aa9.38□□□□□ -0.91
CCDC88C-212ENST00000556767 IFT22Q9H7X7 185 aa9.38□□□□□ -0.91
CCDC88C-212ENST00000556767 ETAA1Q9NY74 926 aa9.38□□□□□ -0.91
CCDC88C-212ENST00000556767 OR6C3Q9NZP0 311 aa9.38□□□□□ -0.91
CCDC88C-212ENST00000556767 STEAP1Q9UHE8 339 aa9.38□□□□□ -0.91
CCDC88C-212ENST00000556767 FAM96BQ9Y3D0 163 aa9.38□□□□□ -0.91
CCDC88C-212ENST00000556767 TRAV39A0A0B4J263 110 aa9.37□□□□□ -0.91
CCDC88C-212ENST00000556767 MDFIC2A0A1B0GVS7 189 aa9.37□□□□□ -0.91
CCDC88C-212ENST00000556767 UBE2QL1A1L167 161 aa9.37□□□□□ -0.91
CCDC88C-212ENST00000556767 TRIM64CA6NLI5 447 aa9.37□□□□□ -0.91
CCDC88C-212ENST00000556767 IFITM5A6NNB3 132 aa9.37□□□□□ -0.91
CCDC88C-212ENST00000556767 TMEM14DPA8MWL7 114 aa9.37□□□□□ -0.91
CCDC88C-212ENST00000556767 NPFFO15130 113 aa9.37□□□□□ -0.91
CCDC88C-212ENST00000556767 SMIM18P0DKX4 95 aa9.37□□□□□ -0.91
CCDC88C-212ENST00000556767 IGHV1-8P0DP01 117 aa9.37□□□□□ -0.91
CCDC88C-212ENST00000556767 FUT3P21217 361 aa9.37□□□□□ -0.91
CCDC88C-212ENST00000556767 SDC2P34741 201 aa9.37□□□□□ -0.91
CCDC88C-212ENST00000556767 LSM3P62310 102 aaKnown RBP9.37□□□□□ -0.91
CCDC88C-212ENST00000556767 DEFB112Q30KQ8 113 aa9.37□□□□□ -0.91
CCDC88C-212ENST00000556767 PRAMEF5Q5TYX0 476 aa9.37□□□□□ -0.91
CCDC88C-212ENST00000556767 RSBN1Q5VWQ0 802 aaPredicted RBP9.37□□□□□ -0.91
CCDC88C-212ENST00000556767 SLC35E4Q6ICL7 350 aa9.37□□□□□ -0.91
CCDC88C-212ENST00000556767 TPRA1Q86W33 373 aa9.37□□□□□ -0.91
CCDC88C-212ENST00000556767 C11orf42Q8N5U0 333 aa9.37□□□□□ -0.91
CCDC88C-212ENST00000556767 ZNF565Q8N9K5 539 aa9.37□□□□□ -0.91
CCDC88C-212ENST00000556767 MRGPRDQ8TDS7 321 aa9.37□□□□□ -0.91
CCDC88C-212ENST00000556767 CCDC107Q8WV48 283 aa9.37□□□□□ -0.91
CCDC88C-212ENST00000556767 TNFRSF14Q92956 283 aa9.37□□□□□ -0.91
CCDC88C-212ENST00000556767 YIPF6Q96EC8 236 aa9.37□□□□□ -0.91
CCDC88C-212ENST00000556767 JMJD8Q96S16 334 aa9.37□□□□□ -0.91
CCDC88C-212ENST00000556767 NICN1Q9BSH3 213 aa9.37□□□□□ -0.91
CCDC88C-212ENST00000556767 MRPS26Q9BYN8 205 aaKnown RBP9.37□□□□□ -0.91
CCDC88C-212ENST00000556767 SETD2Q9BYW2 2564 aaPredicted RBP9.36□□□□□ -0.91
CCDC88C-212ENST00000556767 A0A0B4J203 849 aa9.36□□□□□ -0.91
CCDC88C-212ENST00000556767 A0A0U1RQK1 487 aa9.36□□□□□ -0.91
CCDC88C-212ENST00000556767 TMEM272A0A1B0GTI8 110 aa9.36□□□□□ -0.91
CCDC88C-212ENST00000556767 MEIOCA2RUB1 952 aa9.36□□□□□ -0.91
CCDC88C-212ENST00000556767 ZNF729A6NN14 1252 aaPredicted RBP9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 57 ms