RNA–Protein interactions for RNA: ENST00000555116.5

SHMT2-217, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,885 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-217ENST00000555116 TOX4O94842 621 aa11.7□□□□□ -0.54
SHMT2-217ENST00000555116 PTBP1P26599 531 aaKnown RBP eCLIP11.7□□□□□ -0.54
SHMT2-217ENST00000555116 SCN1BQ07699 218 aa11.7□□□□□ -0.54
SHMT2-217ENST00000555116 METTL11BQ5VVY1 283 aa11.7□□□□□ -0.54
SHMT2-217ENST00000555116 KIR3DL3Q8N743 410 aa11.7□□□□□ -0.54
SHMT2-217ENST00000555116 ASCC1Q8N9N2 400 aaKnown RBP11.7□□□□□ -0.54
SHMT2-217ENST00000555116 SNX22Q96L94 193 aa11.7□□□□□ -0.54
SHMT2-217ENST00000555116 PCGF1Q9BSM1 259 aa11.7□□□□□ -0.54
SHMT2-217ENST00000555116 C19orf12Q9NSK7 152 aa11.7□□□□□ -0.54
SHMT2-217ENST00000555116 ONECUT1Q9UBC0 465 aa11.7□□□□□ -0.54
SHMT2-217ENST00000555116 ZNF69Q9UC07 566 aa11.7□□□□□ -0.54
SHMT2-217ENST00000555116 ADAM30Q9UKF2 790 aa11.7□□□□□ -0.54
SHMT2-217ENST00000555116 IGHV3OR16-10A0A075B7F0 116 aa11.69□□□□□ -0.54
SHMT2-217ENST00000555116 TRAV40A0A0B4J280 105 aa11.69□□□□□ -0.54
SHMT2-217ENST00000555116 MAS1P04201 325 aa11.69□□□□□ -0.54
SHMT2-217ENST00000555116 ELK1P19419 428 aa11.69□□□□□ -0.54
SHMT2-217ENST00000555116 RAB3BP20337 219 aa11.69□□□□□ -0.54
SHMT2-217ENST00000555116 SCGB2A2Q13296 93 aa11.69□□□□□ -0.54
SHMT2-217ENST00000555116 MADCAM1Q13477 382 aa11.69□□□□□ -0.54
SHMT2-217ENST00000555116 Q6P435 159 aa11.69□□□□□ -0.54
SHMT2-217ENST00000555116 CDH26Q8IXH8 852 aa11.69□□□□□ -0.54
SHMT2-217ENST00000555116 Q8N7P7 452 aa11.69□□□□□ -0.54
SHMT2-217ENST00000555116 PHYHIPQ92561 330 aa11.69□□□□□ -0.54
SHMT2-217ENST00000555116 IL36GQ9NZH8 169 aa11.69□□□□□ -0.54
SHMT2-217ENST00000555116 SH2D1BO14796 132 aa11.68□□□□□ -0.54
SHMT2-217ENST00000555116 PSPNO60542 156 aa11.68□□□□□ -0.54
SHMT2-217ENST00000555116 LMO1P25800 156 aa11.68□□□□□ -0.54
SHMT2-217ENST00000555116 P2RY14Q15391 338 aa11.68□□□□□ -0.54
SHMT2-217ENST00000555116 LRRTM1Q86UE6 522 aa11.68□□□□□ -0.54
SHMT2-217ENST00000555116 FAM185AQ8N0U4 392 aa11.68□□□□□ -0.54
SHMT2-217ENST00000555116 BCL6BQ8N143 479 aaPredicted RBP11.68□□□□□ -0.54
SHMT2-217ENST00000555116 OR4M1Q8NGD0 313 aa11.68□□□□□ -0.54
SHMT2-217ENST00000555116 OR51T1Q8NGJ9 327 aa11.68□□□□□ -0.54
SHMT2-217ENST00000555116 OR10K1Q8NGX5 313 aa11.68□□□□□ -0.54
SHMT2-217ENST00000555116 GLS2Q9UI32 602 aa11.68□□□□□ -0.54
SHMT2-217ENST00000555116 ING4Q9UNL4 249 aa11.68□□□□□ -0.54
SHMT2-217ENST00000555116 M0R1W7 72 aa11.68□□□□□ -0.54
SHMT2-217ENST00000555116 SIRPB1O00241 398 aa11.68□□□□□ -0.54
SHMT2-217ENST00000555116 OR2H2O95918 312 aa11.68□□□□□ -0.54
SHMT2-217ENST00000555116 OR3A1P47881 315 aa11.68□□□□□ -0.54
SHMT2-217ENST00000555116 RFX2P48378 723 aa11.68□□□□□ -0.54
SHMT2-217ENST00000555116 RPL31P62899 125 aaKnown RBP11.68□□□□□ -0.54
SHMT2-217ENST00000555116 ASAH1Q13510 395 aa11.68□□□□□ -0.54
SHMT2-217ENST00000555116 RSU1Q15404 277 aa11.68□□□□□ -0.54
SHMT2-217ENST00000555116 HSD17B12Q53GQ0 312 aa11.68□□□□□ -0.54
SHMT2-217ENST00000555116 TMEM200BQ69YZ2 307 aa11.68□□□□□ -0.54
SHMT2-217ENST00000555116 C1orf122Q6ZSJ8 110 aa11.68□□□□□ -0.54
SHMT2-217ENST00000555116 VMO1Q7Z5L0 202 aa11.68□□□□□ -0.54
SHMT2-217ENST00000555116 NRARPQ7Z6K4 114 aa11.68□□□□□ -0.54
SHMT2-217ENST00000555116 CMTM4Q8IZR5 234 aa11.68□□□□□ -0.54
SHMT2-217ENST00000555116 OR4S1Q8NGB4 309 aa11.68□□□□□ -0.54
SHMT2-217ENST00000555116 OR5D13Q8NGL4 314 aa11.68□□□□□ -0.54
SHMT2-217ENST00000555116 C22orf15Q8WYQ4 148 aa11.68□□□□□ -0.54
SHMT2-217ENST00000555116 SLC6A7Q99884 636 aa11.68□□□□□ -0.54
SHMT2-217ENST00000555116 CENPVL3A0A0U1RRI6 287 aa11.67□□□□□ -0.54
SHMT2-217ENST00000555116 MEGF11A6BM72 1044 aa11.67□□□□□ -0.54
SHMT2-217ENST00000555116 NOTOA8MTQ0 251 aa11.67□□□□□ -0.54
SHMT2-217ENST00000555116 FAM25AB3EWG3 89 aa11.67□□□□□ -0.54
SHMT2-217ENST00000555116 FAM25CB3EWG5 89 aa11.67□□□□□ -0.54
SHMT2-217ENST00000555116 FAM25GB3EWG6 89 aa11.67□□□□□ -0.54
SHMT2-217ENST00000555116 HTR3BO95264 441 aa11.67□□□□□ -0.54
SHMT2-217ENST00000555116 SLC2A2P11168 524 aaPredicted RBP11.67□□□□□ -0.54
SHMT2-217ENST00000555116 SRMP19623 302 aa11.67□□□□□ -0.54
SHMT2-217ENST00000555116 GABRR1P24046 479 aa11.67□□□□□ -0.54
SHMT2-217ENST00000555116 IL18Q14116 193 aa11.67□□□□□ -0.54
SHMT2-217ENST00000555116 PDCD1Q15116 288 aa11.67□□□□□ -0.54
SHMT2-217ENST00000555116 C9orf139Q6ZV77 190 aa11.67□□□□□ -0.54
SHMT2-217ENST00000555116 Q8N402 240 aa11.67□□□□□ -0.54
SHMT2-217ENST00000555116 JAGN1Q8N5M9 183 aa11.67□□□□□ -0.54
SHMT2-217ENST00000555116 NKAIN3Q8N8D7 197 aa11.67□□□□□ -0.54
SHMT2-217ENST00000555116 SAMD12Q8N8I0 201 aa11.67□□□□□ -0.54
SHMT2-217ENST00000555116 CHST6Q9GZX3 395 aa11.67□□□□□ -0.54
SHMT2-217ENST00000555116 METTL9Q9H1A3 318 aa11.67□□□□□ -0.54
SHMT2-217ENST00000555116 TCF7L1Q9HCS4 588 aa11.67□□□□□ -0.54
SHMT2-217ENST00000555116 SOX21Q9Y651 276 aaPredicted RBP11.67□□□□□ -0.54
SHMT2-217ENST00000555116 LINC00854A0A1B0GVQ3 168 aa11.66□□□□□ -0.54
SHMT2-217ENST00000555116 SLC33A1O00400 549 aaPredicted RBP11.66□□□□□ -0.54
SHMT2-217ENST00000555116 PAHP00439 452 aa11.66□□□□□ -0.54
SHMT2-217ENST00000555116 HLA-DQB1P01920 261 aa11.66□□□□□ -0.54
SHMT2-217ENST00000555116 CD37P11049 281 aa11.66□□□□□ -0.54
SHMT2-217ENST00000555116 FPR2P25090 351 aa11.66□□□□□ -0.54
SHMT2-217ENST00000555116 ZNF273Q14593 569 aa11.66□□□□□ -0.54
SHMT2-217ENST00000555116 IL13RA2Q14627 380 aa11.66□□□□□ -0.54
SHMT2-217ENST00000555116 GRK1Q15835 563 aa11.66□□□□□ -0.54
SHMT2-217ENST00000555116 PIGYQ3MUY2 71 aa11.66□□□□□ -0.54
SHMT2-217ENST00000555116 GPR157Q5UAW9 335 aa11.66□□□□□ -0.54
SHMT2-217ENST00000555116 BPIFB2Q8N4F0 458 aa11.66□□□□□ -0.54
SHMT2-217ENST00000555116 OR4D6Q8NGJ1 314 aa11.66□□□□□ -0.54
SHMT2-217ENST00000555116 TNFRSF14Q92956 283 aa11.66□□□□□ -0.54
SHMT2-217ENST00000555116 LHX4Q969G2 390 aa11.66□□□□□ -0.54
SHMT2-217ENST00000555116 C1orf147Q96MC9 270 aaPredicted RBP11.66□□□□□ -0.54
SHMT2-217ENST00000555116 SIRT7Q9NRC8 400 aa11.66□□□□□ -0.54
SHMT2-217ENST00000555116 EXTL2Q9UBQ6 330 aa11.66□□□□□ -0.54
SHMT2-217ENST00000555116 MRPS28Q9Y2Q9 187 aaKnown RBP11.66□□□□□ -0.54
SHMT2-217ENST00000555116 MGST3O14880 152 aa11.66□□□□□ -0.54
SHMT2-217ENST00000555116 DEGS1O15121 323 aa11.66□□□□□ -0.54
SHMT2-217ENST00000555116 TCF21O43680 179 aa11.66□□□□□ -0.54
SHMT2-217ENST00000555116 EIF4EP06730 217 aaKnown RBP11.66□□□□□ -0.54
SHMT2-217ENST00000555116 ZNF44P15621 663 aa11.66□□□□□ -0.54
SHMT2-217ENST00000555116 EIF2B2P49770 351 aaKnown RBP11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms