RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 ZNF596Q8TC21 504 aa12.95□□□□□ -0.34
CCDC88C-209ENST00000554872 METTL9Q9H1A3 318 aa12.95□□□□□ -0.34
CCDC88C-209ENST00000554872 PCDHB16Q9NRJ7 776 aa12.95□□□□□ -0.34
CCDC88C-209ENST00000554872 FOXJ3Q9UPW0 622 aa12.95□□□□□ -0.34
CCDC88C-209ENST00000554872 KBTBD11-OT1A0A1B0GTJ5 212 aa12.94□□□□□ -0.34
CCDC88C-209ENST00000554872 MEX3AA1L020 520 aaKnown RBP12.94□□□□□ -0.34
CCDC88C-209ENST00000554872 A6NDX4 124 aa12.94□□□□□ -0.34
CCDC88C-209ENST00000554872 FAM90A22PA8MWA6 464 aa12.94□□□□□ -0.34
CCDC88C-209ENST00000554872 MYL12BO14950 172 aa12.94□□□□□ -0.34
CCDC88C-209ENST00000554872 CHST1O43916 411 aa12.94□□□□□ -0.34
CCDC88C-209ENST00000554872 MMP23AO75900 390 aa12.94□□□□□ -0.34
CCDC88C-209ENST00000554872 CDK2P24941 298 aa12.94□□□□□ -0.34
CCDC88C-209ENST00000554872 HTR1DP28221 377 aa12.94□□□□□ -0.34
CCDC88C-209ENST00000554872 C21orf33P30042 268 aaPredicted RBP12.94□□□□□ -0.34
CCDC88C-209ENST00000554872 RBM11P57052 281 aaKnown RBP12.94□□□□□ -0.34
CCDC88C-209ENST00000554872 GABPB1Q06547 395 aaPredicted RBP12.94□□□□□ -0.34
CCDC88C-209ENST00000554872 DYNC1I2Q13409 638 aaKnown RBP12.94□□□□□ -0.34
CCDC88C-209ENST00000554872 SSX2Q16385 188 aa12.94□□□□□ -0.34
CCDC88C-209ENST00000554872 MPV17LQ2QL34 196 aa12.94□□□□□ -0.34
CCDC88C-209ENST00000554872 PAN3Q58A45 887 aaKnown RBP12.94□□□□□ -0.34
CCDC88C-209ENST00000554872 SATL1Q86VE3 508 aa12.94□□□□□ -0.34
CCDC88C-209ENST00000554872 ZNF565Q8N9K5 539 aa12.94□□□□□ -0.34
CCDC88C-209ENST00000554872 OR4D6Q8NGJ1 314 aa12.94□□□□□ -0.34
CCDC88C-209ENST00000554872 OR13C5Q8NGS8 318 aa12.94□□□□□ -0.34
CCDC88C-209ENST00000554872 CREB3L1Q96BA8 519 aa12.94□□□□□ -0.34
CCDC88C-209ENST00000554872 MRPS24Q96EL2 167 aaKnown RBP12.94□□□□□ -0.34
CCDC88C-209ENST00000554872 FAM192AQ9GZU8 254 aa12.94□□□□□ -0.34
CCDC88C-209ENST00000554872 ABCB10Q9NRK6 738 aa12.94□□□□□ -0.34
CCDC88C-209ENST00000554872 TRAV8-7A0A075B6U6 113 aa12.93□□□□□ -0.34
CCDC88C-209ENST00000554872 ANKRD65E5RJM6 399 aa12.93□□□□□ -0.34
CCDC88C-209ENST00000554872 M0QZ24 198 aa12.93□□□□□ -0.34
CCDC88C-209ENST00000554872 CDK1P06493 297 aa12.93□□□□□ -0.34
CCDC88C-209ENST00000554872 MAPK3P27361 379 aaPredicted RBP12.93□□□□□ -0.34
CCDC88C-209ENST00000554872 SCN1BQ07699 218 aa12.93□□□□□ -0.34
CCDC88C-209ENST00000554872 SRSF4Q08170 494 aaKnown RBP12.93□□□□□ -0.34
CCDC88C-209ENST00000554872 GPR176Q14439 515 aa12.93□□□□□ -0.34
CCDC88C-209ENST00000554872 ATXN7L3Q14CW9 347 aaPredicted RBP12.93□□□□□ -0.34
CCDC88C-209ENST00000554872 FAM189A2Q15884 450 aa12.93□□□□□ -0.34
CCDC88C-209ENST00000554872 LY6EQ16553 131 aa12.93□□□□□ -0.34
CCDC88C-209ENST00000554872 C17orf58Q2M2W7 97 aa12.93□□□□□ -0.34
CCDC88C-209ENST00000554872 PIGYQ3MUY2 71 aa12.93□□□□□ -0.34
CCDC88C-209ENST00000554872 PRAMEF5Q5TYX0 476 aa12.93□□□□□ -0.34
CCDC88C-209ENST00000554872 RSBN1Q5VWQ0 802 aaPredicted RBP12.93□□□□□ -0.34
CCDC88C-209ENST00000554872 LYPD6Q86Y78 171 aa12.93□□□□□ -0.34
CCDC88C-209ENST00000554872 ABHD12Q8N2K0 398 aa12.93□□□□□ -0.34
CCDC88C-209ENST00000554872 OSR2Q8N2R0 312 aa12.93□□□□□ -0.34
CCDC88C-209ENST00000554872 BPIFB6Q8NFQ5 453 aa12.93□□□□□ -0.34
CCDC88C-209ENST00000554872 OR10A7Q8NGE5 316 aa12.93□□□□□ -0.34
CCDC88C-209ENST00000554872 DERL3Q96Q80 235 aa12.93□□□□□ -0.34
CCDC88C-209ENST00000554872 ZNF184Q99676 751 aaPredicted RBP12.93□□□□□ -0.34
CCDC88C-209ENST00000554872 MND1Q9BWT6 205 aa12.93□□□□□ -0.34
CCDC88C-209ENST00000554872 BARHL1Q9BZE3 327 aa12.93□□□□□ -0.34
CCDC88C-209ENST00000554872 PPIL3Q9H2H8 161 aaKnown RBP12.93□□□□□ -0.34
CCDC88C-209ENST00000554872 DPM3Q9P2X0 92 aa12.93□□□□□ -0.34
CCDC88C-209ENST00000554872 NKX1-2Q9UD57 310 aaPredicted RBP12.93□□□□□ -0.34
CCDC88C-209ENST00000554872 ERGIC3Q9Y282 383 aa12.93□□□□□ -0.34
CCDC88C-209ENST00000554872 OOSP1A8MZH6 123 aa12.92□□□□□ -0.34
CCDC88C-209ENST00000554872 NPIPB11E5RHQ5 1161 aa12.92□□□□□ -0.34
CCDC88C-209ENST00000554872 IL1AP01583 271 aa12.92□□□□□ -0.34
CCDC88C-209ENST00000554872 CSTBP04080 98 aaKnown RBP12.92□□□□□ -0.34
CCDC88C-209ENST00000554872 CELP19835 753 aa12.92□□□□□ -0.34
CCDC88C-209ENST00000554872 PAX6P26367 422 aa12.92□□□□□ -0.34
CCDC88C-209ENST00000554872 DOC2BQ14184 412 aa12.92□□□□□ -0.34
CCDC88C-209ENST00000554872 C6orf141Q5SZD1 244 aa12.92□□□□□ -0.34
CCDC88C-209ENST00000554872 CCBE1Q6UXH8 406 aaPredicted RBP12.92□□□□□ -0.34
CCDC88C-209ENST00000554872 SLC16A12Q6ZSM3 486 aa12.92□□□□□ -0.34
CCDC88C-209ENST00000554872 C16orf82Q7Z2V1 217 aa12.92□□□□□ -0.34
CCDC88C-209ENST00000554872 NKAIN3Q8N8D7 197 aa12.92□□□□□ -0.34
CCDC88C-209ENST00000554872 ZFP41Q8N8Y5 198 aa12.92□□□□□ -0.34
CCDC88C-209ENST00000554872 OR10K1Q8NGX5 313 aa12.92□□□□□ -0.34
CCDC88C-209ENST00000554872 OR2T6Q8NHC8 308 aa12.92□□□□□ -0.34
CCDC88C-209ENST00000554872 NDNFQ8TB73 568 aa12.92□□□□□ -0.34
CCDC88C-209ENST00000554872 NRG4Q8WWG1 115 aa12.92□□□□□ -0.34
CCDC88C-209ENST00000554872 OR14A2Q96R54 314 aa12.92□□□□□ -0.34
CCDC88C-209ENST00000554872 TCF7L1Q9HCS4 588 aa12.92□□□□□ -0.34
CCDC88C-209ENST00000554872 ST3GAL6Q9Y274 331 aa12.92□□□□□ -0.34
CCDC88C-209ENST00000554872 MAGEA13PA6NCF6 341 aa12.91□□□□□ -0.34
CCDC88C-209ENST00000554872 CDRT1O95170 752 aa12.91□□□□□ -0.34
CCDC88C-209ENST00000554872 HTR3BO95264 441 aa12.91□□□□□ -0.34
CCDC88C-209ENST00000554872 GTF2F2P13984 249 aa12.91□□□□□ -0.34
CCDC88C-209ENST00000554872 GDNFP39905 211 aa12.91□□□□□ -0.34
CCDC88C-209ENST00000554872 CEACAM3P40198 252 aa12.91□□□□□ -0.34
CCDC88C-209ENST00000554872 ARHGDIBP52566 201 aa12.91□□□□□ -0.34
CCDC88C-209ENST00000554872 HLA-DRB5Q30154 266 aa12.91□□□□□ -0.34
CCDC88C-209ENST00000554872 MS4A15Q8N5U1 240 aa12.91□□□□□ -0.34
CCDC88C-209ENST00000554872 SUMF2Q8NBJ7 301 aa12.91□□□□□ -0.34
CCDC88C-209ENST00000554872 CFHR4Q92496 578 aa12.91□□□□□ -0.34
CCDC88C-209ENST00000554872 MYDGFQ969H8 173 aa12.91□□□□□ -0.34
CCDC88C-209ENST00000554872 KIRREL1Q96J84 757 aa12.91□□□□□ -0.34
CCDC88C-209ENST00000554872 NR1H4Q96RI1 486 aaPredicted RBP12.91□□□□□ -0.34
CCDC88C-209ENST00000554872 S100A13Q99584 98 aa12.91□□□□□ -0.34
CCDC88C-209ENST00000554872 UQCC2Q9BRT2 126 aa12.91□□□□□ -0.34
CCDC88C-209ENST00000554872 DPCDQ9BVM2 203 aaPredicted RBP12.91□□□□□ -0.34
CCDC88C-209ENST00000554872 ANKRD60Q9BZ19 345 aa12.91□□□□□ -0.34
CCDC88C-209ENST00000554872 MMP27Q9H306 513 aa12.91□□□□□ -0.34
CCDC88C-209ENST00000554872 ZNF702PQ9H963 129 aa12.91□□□□□ -0.34
CCDC88C-209ENST00000554872 ZNF286AQ9HBT8 521 aa12.91□□□□□ -0.34
CCDC88C-209ENST00000554872 SPACA1Q9HBV2 294 aa12.91□□□□□ -0.34
CCDC88C-209ENST00000554872 CALYQ9NYX4 217 aa12.91□□□□□ -0.34
CCDC88C-209ENST00000554872 RCC2Q9P258 522 aaKnown RBP12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms