RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 IL36GQ9NZH8 169 aa9.39□□□□□ -0.91
CCDC88C-208ENST00000554165 KIF25Q9UIL4 384 aa9.39□□□□□ -0.91
CCDC88C-208ENST00000554165 ST3GAL6Q9Y274 331 aa9.39□□□□□ -0.91
CCDC88C-208ENST00000554165 MRPS28Q9Y2Q9 187 aaKnown RBP9.39□□□□□ -0.91
CCDC88C-208ENST00000554165 POMT1Q9Y6A1 747 aa9.39□□□□□ -0.91
CCDC88C-208ENST00000554165 MEGF11A6BM72 1044 aa9.38□□□□□ -0.91
CCDC88C-208ENST00000554165 FAM90A8PA6NJQ4 464 aa9.38□□□□□ -0.91
CCDC88C-208ENST00000554165 OR7C1O76099 320 aaPredicted RBP9.38□□□□□ -0.91
CCDC88C-208ENST00000554165 RBP4P02753 201 aa9.38□□□□□ -0.91
CCDC88C-208ENST00000554165 CSN2P05814 226 aa9.38□□□□□ -0.91
CCDC88C-208ENST00000554165 CGB3P0DN86 165 aa9.38□□□□□ -0.91
CCDC88C-208ENST00000554165 CGB7P0DN87 165 aa9.38□□□□□ -0.91
CCDC88C-208ENST00000554165 HSPA13P48723 471 aa9.38□□□□□ -0.91
CCDC88C-208ENST00000554165 RAG2P55895 527 aa9.38□□□□□ -0.91
CCDC88C-208ENST00000554165 IL13RA2Q14627 380 aa9.38□□□□□ -0.91
CCDC88C-208ENST00000554165 C17orf58Q2M2W7 97 aa9.38□□□□□ -0.91
CCDC88C-208ENST00000554165 RSBN1Q5VWQ0 802 aaPredicted RBP9.38□□□□□ -0.91
CCDC88C-208ENST00000554165 ZNF626Q68DY1 528 aa9.38□□□□□ -0.91
CCDC88C-208ENST00000554165 TMEM91Q6ZNR0 172 aa9.38□□□□□ -0.91
CCDC88C-208ENST00000554165 CEACAM19Q7Z692 300 aa9.38□□□□□ -0.91
CCDC88C-208ENST00000554165 LRRTM1Q86UE6 522 aa9.38□□□□□ -0.91
CCDC88C-208ENST00000554165 SUMF2Q8NBJ7 301 aa9.38□□□□□ -0.91
CCDC88C-208ENST00000554165 TMEM104Q8NE00 496 aa9.38□□□□□ -0.91
CCDC88C-208ENST00000554165 OR11H6Q8NGC7 330 aa9.38□□□□□ -0.91
CCDC88C-208ENST00000554165 OR13A1Q8NGR1 328 aa9.38□□□□□ -0.91
CCDC88C-208ENST00000554165 DYRK2Q92630 601 aa9.38□□□□□ -0.91
CCDC88C-208ENST00000554165 CORO2AQ92828 525 aa9.38□□□□□ -0.91
CCDC88C-208ENST00000554165 FOXRED1Q96CU9 486 aaPredicted RBP9.38□□□□□ -0.91
CCDC88C-208ENST00000554165 CPNE2Q96FN4 548 aaPredicted RBP9.38□□□□□ -0.91
CCDC88C-208ENST00000554165 DPCDQ9BVM2 203 aaPredicted RBP9.38□□□□□ -0.91
CCDC88C-208ENST00000554165 TMEM133Q9H2Q1 129 aa9.38□□□□□ -0.91
CCDC88C-208ENST00000554165 DPAGT1Q9H3H5 408 aa9.38□□□□□ -0.91
CCDC88C-208ENST00000554165 KCNK15Q9H427 330 aa9.38□□□□□ -0.91
CCDC88C-208ENST00000554165 FOXJ3Q9UPW0 622 aa9.38□□□□□ -0.91
CCDC88C-208ENST00000554165 UBE2J1Q9Y385 318 aaPredicted RBP9.38□□□□□ -0.91
CCDC88C-208ENST00000554165 HILPDAQ9Y5L2 63 aa9.38□□□□□ -0.91
CCDC88C-208ENST00000554165 SESN1Q9Y6P5 492 aa9.38□□□□□ -0.91
CCDC88C-208ENST00000554165 MGAM2Q2M2H8 2515 aa9.38□□□□□ -0.91
CCDC88C-208ENST00000554165 MEIKINA0A087WXM9 373 aa9.37□□□□□ -0.91
CCDC88C-208ENST00000554165 TRGV10A0A0A0MS01 117 aa9.37□□□□□ -0.91
CCDC88C-208ENST00000554165 IGHV2-26A0A0B4J1V2 119 aa9.37□□□□□ -0.91
CCDC88C-208ENST00000554165 SC5DO75845 299 aa9.37□□□□□ -0.91
CCDC88C-208ENST00000554165 CLPXO76031 633 aa9.37□□□□□ -0.91
CCDC88C-208ENST00000554165 IGHV3-7P01780 117 aa9.37□□□□□ -0.91
CCDC88C-208ENST00000554165 CSTBP04080 98 aaKnown RBP9.37□□□□□ -0.91
CCDC88C-208ENST00000554165 CRYBA1P05813 215 aa9.37□□□□□ -0.91
CCDC88C-208ENST00000554165 GLP1RP43220 463 aa9.37□□□□□ -0.91
CCDC88C-208ENST00000554165 LGALS4P56470 323 aa9.37□□□□□ -0.91
CCDC88C-208ENST00000554165 KRTAP10-3P60369 221 aa9.37□□□□□ -0.91
CCDC88C-208ENST00000554165 TPBGQ13641 420 aa9.37□□□□□ -0.91
CCDC88C-208ENST00000554165 SSX2Q16385 188 aa9.37□□□□□ -0.91
CCDC88C-208ENST00000554165 FAM53AQ6NSI3 398 aaPredicted RBP9.37□□□□□ -0.91
CCDC88C-208ENST00000554165 PRSS48Q7RTY5 328 aa9.37□□□□□ -0.91
CCDC88C-208ENST00000554165 OR13D1Q8NGV5 346 aa9.37□□□□□ -0.91
CCDC88C-208ENST00000554165 RFESDQ8TAC1 157 aa9.37□□□□□ -0.91
CCDC88C-208ENST00000554165 UBALD1Q8TB05 177 aa9.37□□□□□ -0.91
CCDC88C-208ENST00000554165 UFD1Q92890 307 aa9.37□□□□□ -0.91
CCDC88C-208ENST00000554165 LEAP2Q969E1 77 aa9.37□□□□□ -0.91
CCDC88C-208ENST00000554165 S100A13Q99584 98 aa9.37□□□□□ -0.91
CCDC88C-208ENST00000554165 ZNF747Q9BV97 191 aa9.37□□□□□ -0.91
CCDC88C-208ENST00000554165 MEGF9Q9H1U4 602 aa9.37□□□□□ -0.91
CCDC88C-208ENST00000554165 VPREB3Q9UKI3 123 aa9.37□□□□□ -0.91
CCDC88C-208ENST00000554165 RAB26Q9ULW5 256 aa9.37□□□□□ -0.91
CCDC88C-208ENST00000554165 PKD1L1Q8TDX9 2849 aa9.37□□□□□ -0.91
CCDC88C-208ENST00000554165 CHST1O43916 411 aa9.36□□□□□ -0.91
CCDC88C-208ENST00000554165 GTF2F2P13984 249 aa9.36□□□□□ -0.91
CCDC88C-208ENST00000554165 LTC4SQ16873 150 aa9.36□□□□□ -0.91
CCDC88C-208ENST00000554165 LRRC75BQ2VPJ9 315 aa9.36□□□□□ -0.91
CCDC88C-208ENST00000554165 FBLN7Q53RD9 439 aa9.36□□□□□ -0.91
CCDC88C-208ENST00000554165 NHLRC3Q5JS37 347 aa9.36□□□□□ -0.91
CCDC88C-208ENST00000554165 RBM48Q5RL73 367 aaKnown RBP9.36□□□□□ -0.91
CCDC88C-208ENST00000554165 ATAD3CQ5T2N8 411 aa9.36□□□□□ -0.91
CCDC88C-208ENST00000554165 AWAT2Q6E213 333 aa9.36□□□□□ -0.91
CCDC88C-208ENST00000554165 OR10K2Q6IF99 312 aa9.36□□□□□ -0.91
CCDC88C-208ENST00000554165 CCBE1Q6UXH8 406 aaPredicted RBP9.36□□□□□ -0.91
CCDC88C-208ENST00000554165 HEPN1Q6WQI6 88 aa9.36□□□□□ -0.91
CCDC88C-208ENST00000554165 Q6ZSV7 163 aa9.36□□□□□ -0.91
CCDC88C-208ENST00000554165 ABHD12Q8N2K0 398 aa9.36□□□□□ -0.91
CCDC88C-208ENST00000554165 MS4A15Q8N5U1 240 aa9.36□□□□□ -0.91
CCDC88C-208ENST00000554165 MRGPRDQ8TDS7 321 aa9.36□□□□□ -0.91
CCDC88C-208ENST00000554165 FAM46BQ96A09 425 aa9.36□□□□□ -0.91
CCDC88C-208ENST00000554165 GFI1Q99684 422 aa9.36□□□□□ -0.91
CCDC88C-208ENST00000554165 MGLLQ99685 303 aa9.36□□□□□ -0.91
CCDC88C-208ENST00000554165 CLEC7AQ9BXN2 247 aa9.36□□□□□ -0.91
CCDC88C-208ENST00000554165 SLITRK2Q9H156 845 aa9.36□□□□□ -0.91
CCDC88C-208ENST00000554165 ZNF286AQ9HBT8 521 aa9.36□□□□□ -0.91
CCDC88C-208ENST00000554165 TAS2R3Q9NYW6 316 aa9.36□□□□□ -0.91
CCDC88C-208ENST00000554165 SIGLEC9Q9Y336 463 aa9.36□□□□□ -0.91
CCDC88C-208ENST00000554165 RRP15Q9Y3B9 282 aaKnown RBP9.36□□□□□ -0.91
CCDC88C-208ENST00000554165 KBTBD11-OT1A0A1B0GTJ5 212 aa9.35□□□□□ -0.91
CCDC88C-208ENST00000554165 FUOMA2VDF0 154 aa9.35□□□□□ -0.91
CCDC88C-208ENST00000554165 BTBD17A6NE02 478 aa9.35□□□□□ -0.91
CCDC88C-208ENST00000554165 CRTAPO75718 401 aaPredicted RBP9.35□□□□□ -0.91
CCDC88C-208ENST00000554165 NDUFA7O95182 113 aa9.35□□□□□ -0.91
CCDC88C-208ENST00000554165 UCHL1P09936 223 aa9.35□□□□□ -0.91
CCDC88C-208ENST00000554165 MGMTP16455 207 aa9.35□□□□□ -0.91
CCDC88C-208ENST00000554165 CPEP16870 476 aa9.35□□□□□ -0.91
CCDC88C-208ENST00000554165 SRMP19623 302 aa9.35□□□□□ -0.91
CCDC88C-208ENST00000554165 NFYBP25208 207 aa9.35□□□□□ -0.91
CCDC88C-208ENST00000554165 MAPK3P27361 379 aaPredicted RBP9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 85.7 ms