RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 ATXN7O15265 892 aaPredicted RBP6.44□□□□□ -1.38
LIMA1-213ENST00000552720 CST7O76096 145 aa6.44□□□□□ -1.38
LIMA1-213ENST00000552720 TMEM50AO95807 157 aa6.44□□□□□ -1.38
LIMA1-213ENST00000552720 HLA-HP01893 362 aa6.44□□□□□ -1.38
LIMA1-213ENST00000552720 EPHA1P21709 976 aa6.44□□□□□ -1.38
LIMA1-213ENST00000552720 PTAFRP25105 342 aa6.44□□□□□ -1.38
LIMA1-213ENST00000552720 LMO1P25800 156 aa6.44□□□□□ -1.38
LIMA1-213ENST00000552720 HAAOP46952 286 aa6.44□□□□□ -1.38
LIMA1-213ENST00000552720 GPM6AP51674 278 aa6.44□□□□□ -1.38
LIMA1-213ENST00000552720 UCP2P55851 309 aa6.44□□□□□ -1.38
LIMA1-213ENST00000552720 RUNX1Q01196 453 aa6.44□□□□□ -1.38
LIMA1-213ENST00000552720 ZFP36L1Q07352 338 aaKnown RBP6.44□□□□□ -1.38
LIMA1-213ENST00000552720 GPR157Q5UAW9 335 aa6.44□□□□□ -1.38
LIMA1-213ENST00000552720 SPINK14Q6IE38 97 aa6.44□□□□□ -1.38
LIMA1-213ENST00000552720 GAPTQ8N292 157 aa6.44□□□□□ -1.38
LIMA1-213ENST00000552720 OR2C3Q8N628 320 aa6.44□□□□□ -1.38
LIMA1-213ENST00000552720 TMEM217Q8N7C4 229 aa6.44□□□□□ -1.38
LIMA1-213ENST00000552720 C15orf54Q8N8G6 183 aa6.44□□□□□ -1.38
LIMA1-213ENST00000552720 OR2V1Q8NHB1 315 aa6.44□□□□□ -1.38
LIMA1-213ENST00000552720 LILRB1Q8NHL6 650 aaPredicted RBP6.44□□□□□ -1.38
LIMA1-213ENST00000552720 ZNF488Q96MN9 340 aa6.44□□□□□ -1.38
LIMA1-213ENST00000552720 C11orf1Q9H5F2 150 aa6.44□□□□□ -1.38
LIMA1-213ENST00000552720 PARPBPQ9NWS1 579 aa6.44□□□□□ -1.38
LIMA1-213ENST00000552720 POMT1Q9Y6A1 747 aa6.44□□□□□ -1.38
LIMA1-213ENST00000552720 KMT2EQ8IZD2 1858 aa6.44□□□□□ -1.38
LIMA1-213ENST00000552720 PRR14LQ5THK1 2151 aa6.44□□□□□ -1.38
LIMA1-213ENST00000552720 IGKV1-6A0A0C4DH72 117 aa6.43□□□□□ -1.38
LIMA1-213ENST00000552720 TRDCB7Z8K6 153 aa6.43□□□□□ -1.38
LIMA1-213ENST00000552720 RPL36A-HNRNPH2H7BZ11 118 aa6.43□□□□□ -1.38
LIMA1-213ENST00000552720 K7N7A8 449 aa6.43□□□□□ -1.38
LIMA1-213ENST00000552720 HSD17B6O14756 317 aa6.43□□□□□ -1.38
LIMA1-213ENST00000552720 ADAM20O43506 726 aa6.43□□□□□ -1.38
LIMA1-213ENST00000552720 CYC1P08574 325 aa6.43□□□□□ -1.38
LIMA1-213ENST00000552720 FBP1P09467 338 aa6.43□□□□□ -1.38
LIMA1-213ENST00000552720 ATP6V0CP27449 155 aa6.43□□□□□ -1.38
LIMA1-213ENST00000552720 OR2B8PP59922 312 aa6.43□□□□□ -1.38
LIMA1-213ENST00000552720 RAB5BP61020 215 aa6.43□□□□□ -1.38
LIMA1-213ENST00000552720 CTAG1AP78358 180 aa6.43□□□□□ -1.38
LIMA1-213ENST00000552720 TMEM211Q6ICI0 200 aa6.43□□□□□ -1.38
LIMA1-213ENST00000552720 TIPARPQ7Z3E1 657 aaKnown RBP6.43□□□□□ -1.38
LIMA1-213ENST00000552720 ZNF100Q8IYN0 542 aa6.43□□□□□ -1.38
LIMA1-213ENST00000552720 NANPQ8TBE9 248 aa6.43□□□□□ -1.38
LIMA1-213ENST00000552720 SGCZQ96LD1 299 aa6.43□□□□□ -1.38
LIMA1-213ENST00000552720 HES7Q9BYE0 225 aa6.43□□□□□ -1.38
LIMA1-213ENST00000552720 EGLN1Q9GZT9 426 aa6.43□□□□□ -1.38
LIMA1-213ENST00000552720 TMEM222Q9H0R3 208 aa6.43□□□□□ -1.38
LIMA1-213ENST00000552720 OR51B6Q9H340 312 aa6.43□□□□□ -1.38
LIMA1-213ENST00000552720 PRDM6Q9NQX0 595 aa6.43□□□□□ -1.38
LIMA1-213ENST00000552720 CCL28Q9NRJ3 127 aa6.43□□□□□ -1.38
LIMA1-213ENST00000552720 GLRX2Q9NS18 164 aa6.43□□□□□ -1.38
LIMA1-213ENST00000552720 IL36GQ9NZH8 169 aa6.43□□□□□ -1.38
LIMA1-213ENST00000552720 MTCH1Q9NZJ7 389 aa6.43□□□□□ -1.38
LIMA1-213ENST00000552720 UBE2J1Q9Y385 318 aaPredicted RBP6.43□□□□□ -1.38
LIMA1-213ENST00000552720 TMED3Q9Y3Q3 217 aa6.43□□□□□ -1.38
LIMA1-213ENST00000552720 CACNA1DQ01668 2161 aa6.43□□□□□ -1.38
LIMA1-213ENST00000552720 C1orf196B1AJZ1 125 aa6.43□□□□□ -1.38
LIMA1-213ENST00000552720 PROB1E7EW31 1015 aa6.43□□□□□ -1.38
LIMA1-213ENST00000552720 SYNGR1O43759 233 aa6.43□□□□□ -1.38
LIMA1-213ENST00000552720 LILRA1O75019 489 aa6.43□□□□□ -1.38
LIMA1-213ENST00000552720 NGFP01138 241 aa6.43□□□□□ -1.38
LIMA1-213ENST00000552720 FOLR2P14207 255 aa6.43□□□□□ -1.38
LIMA1-213ENST00000552720 NKX2-1P43699 371 aaPredicted RBP6.43□□□□□ -1.38
LIMA1-213ENST00000552720 SULT1A1P50225 295 aa6.43□□□□□ -1.38
LIMA1-213ENST00000552720 CEBPGP53567 150 aa6.43□□□□□ -1.38
LIMA1-213ENST00000552720 UCP3P55916 312 aa6.43□□□□□ -1.38
LIMA1-213ENST00000552720 ARF1P84077 181 aaKnown RBP6.43□□□□□ -1.38
LIMA1-213ENST00000552720 PRDX4Q13162 271 aa6.43□□□□□ -1.38
LIMA1-213ENST00000552720 GNMTQ14749 295 aa6.43□□□□□ -1.38
LIMA1-213ENST00000552720 IZUMO4Q1ZYL8 232 aa6.43□□□□□ -1.38
LIMA1-213ENST00000552720 EIF2S3LQ2VIR3 472 aaKnown RBP6.43□□□□□ -1.38
LIMA1-213ENST00000552720 ACER2Q5QJU3 275 aa6.43□□□□□ -1.38
LIMA1-213ENST00000552720 ADAM5Q6NVV9 412 aa6.43□□□□□ -1.38
LIMA1-213ENST00000552720 C20orf204Q6ZNR8 217 aa6.43□□□□□ -1.38
LIMA1-213ENST00000552720 DPPA2Q7Z7J5 298 aa6.43□□□□□ -1.38
LIMA1-213ENST00000552720 ZNF695Q8IW36 515 aa6.43□□□□□ -1.38
LIMA1-213ENST00000552720 SELENOHQ8IZQ5 122 aaKnown RBP6.43□□□□□ -1.38
LIMA1-213ENST00000552720 TMEM105Q8N8V8 129 aa6.43□□□□□ -1.38
LIMA1-213ENST00000552720 CCDC71LQ8N9Z2 235 aa6.43□□□□□ -1.38
LIMA1-213ENST00000552720 OR2G3Q8NGZ4 309 aa6.43□□□□□ -1.38
LIMA1-213ENST00000552720 NEK7Q8TDX7 302 aa6.43□□□□□ -1.38
LIMA1-213ENST00000552720 KCNE4Q8WWG9 221 aa6.43□□□□□ -1.38
LIMA1-213ENST00000552720 C1QTNF5Q9BXJ0 243 aa6.43□□□□□ -1.38
LIMA1-213ENST00000552720 PUS1Q9Y606 427 aaKnown RBP eCLIP6.43□□□□□ -1.38
LIMA1-213ENST00000552720 GPR179Q6PRD1 2367 aa6.42□□□□□ -1.38
LIMA1-213ENST00000552720 C5orf49A4QMS7 147 aa6.42□□□□□ -1.38
LIMA1-213ENST00000552720 C5orf52A6NGY3 159 aa6.42□□□□□ -1.38
LIMA1-213ENST00000552720 SLC22A20A6NK97 555 aa6.42□□□□□ -1.38
LIMA1-213ENST00000552720 H3BP45 60 aa6.42□□□□□ -1.38
LIMA1-213ENST00000552720 DNPH1O43598 174 aa6.42□□□□□ -1.38
LIMA1-213ENST00000552720 CYTIPO60759 359 aa6.42□□□□□ -1.38
LIMA1-213ENST00000552720 GFRA1P56159 465 aa6.42□□□□□ -1.38
LIMA1-213ENST00000552720 LPAL2Q16609 132 aa6.42□□□□□ -1.38
LIMA1-213ENST00000552720 HAGHQ16775 308 aa6.42□□□□□ -1.38
LIMA1-213ENST00000552720 SPSB3Q6PJ21 355 aa6.42□□□□□ -1.38
LIMA1-213ENST00000552720 MYPOPQ86VE0 399 aaPredicted RBP6.42□□□□□ -1.38
LIMA1-213ENST00000552720 TUSC5Q8IXB3 177 aa6.42□□□□□ -1.38
LIMA1-213ENST00000552720 TMEM252Q8N6L7 170 aa6.42□□□□□ -1.38
LIMA1-213ENST00000552720 OR5C1Q8NGR4 320 aa6.42□□□□□ -1.38
LIMA1-213ENST00000552720 SPSB4Q96A44 273 aa6.42□□□□□ -1.38
LIMA1-213ENST00000552720 ZNF552Q9H707 407 aaPredicted RBP6.42□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms