RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 HOGA1Q86XE5 327 aa13.03□□□□□ -0.32
CUX1-214ENST00000550008 MRPS24Q96EL2 167 aaKnown RBP13.03□□□□□ -0.32
CUX1-214ENST00000550008 PIK3IP1Q96FE7 263 aa13.03□□□□□ -0.32
CUX1-214ENST00000550008 OR5B21A6NL26 309 aa13.03□□□□□ -0.32
CUX1-214ENST00000550008 ACTL6AO96019 429 aa13.03□□□□□ -0.32
CUX1-214ENST00000550008 PHYHD1Q5SRE7 291 aa13.03□□□□□ -0.32
CUX1-214ENST00000550008 NUFIP2Q7Z417 695 aaKnown RBP13.03□□□□□ -0.32
CUX1-214ENST00000550008 EGLN1Q9GZT9 426 aa13.03□□□□□ -0.32
CUX1-214ENST00000550008 OR2D2Q9H210 308 aa13.03□□□□□ -0.32
CUX1-214ENST00000550008 MUC6Q6W4X9 2439 aa13.03□□□□□ -0.32
CUX1-214ENST00000550008 IGLV3-12A0A075B6K2 115 aa13.02□□□□□ -0.32
CUX1-214ENST00000550008 MT-CO2P00403 227 aa13.02□□□□□ -0.32
CUX1-214ENST00000550008 OPN1MWP04001 364 aa13.02□□□□□ -0.32
CUX1-214ENST00000550008 OPN1MW2P0DN77 364 aa13.02□□□□□ -0.32
CUX1-214ENST00000550008 OPN1MW3P0DN78 364 aa13.02□□□□□ -0.32
CUX1-214ENST00000550008 FDX2Q6P4F2 183 aa13.02□□□□□ -0.32
CUX1-214ENST00000550008 RPUSD4Q96CM3 377 aaKnown RBP13.02□□□□□ -0.32
CUX1-214ENST00000550008 GFI1Q99684 422 aa13.02□□□□□ -0.32
CUX1-214ENST00000550008 TMED3Q9Y3Q3 217 aa13.02□□□□□ -0.32
CUX1-214ENST00000550008 USF3Q68DE3 2245 aa13.02□□□□□ -0.32
CUX1-214ENST00000550008 DENND4CQ5VZ89 1909 aa13.02□□□□□ -0.32
CUX1-214ENST00000550008 NKX6-3A6NJ46 265 aa13.02□□□□□ -0.32
CUX1-214ENST00000550008 RPS23P62266 143 aaKnown RBP13.02□□□□□ -0.32
CUX1-214ENST00000550008 ARSJQ5FYB0 599 aaPredicted RBP13.02□□□□□ -0.32
CUX1-214ENST00000550008 ZNF826PQ6ZT77 177 aa13.02□□□□□ -0.32
CUX1-214ENST00000550008 C17orf82Q86X59 251 aaPredicted RBP13.02□□□□□ -0.32
CUX1-214ENST00000550008 OR2C3Q8N628 320 aa13.02□□□□□ -0.32
CUX1-214ENST00000550008 ZNF319Q9P2F9 582 aa13.02□□□□□ -0.32
CUX1-214ENST00000550008 MPC1Q9Y5U8 109 aa13.02□□□□□ -0.32
CUX1-214ENST00000550008 HEATR1Q9H583 2144 aaKnown RBP13.02□□□□□ -0.33
CUX1-214ENST00000550008 UBE2L5PA0A1B0GUS4 154 aa13.02□□□□□ -0.33
CUX1-214ENST00000550008 DHRS7CA6NNS2 312 aa13.02□□□□□ -0.33
CUX1-214ENST00000550008 AQP7O14520 342 aa13.02□□□□□ -0.33
CUX1-214ENST00000550008 OR8U8P0C7N1 319 aa13.02□□□□□ -0.33
CUX1-214ENST00000550008 ZBTB25P24278 435 aa13.02□□□□□ -0.33
CUX1-214ENST00000550008 ENDOGQ14249 297 aaKnown RBP13.02□□□□□ -0.33
CUX1-214ENST00000550008 OR10P1Q8NGE3 313 aa13.02□□□□□ -0.33
CUX1-214ENST00000550008 CLDN16Q9Y5I7 305 aa13.02□□□□□ -0.33
CUX1-214ENST00000550008 FCGR3BO75015 233 aa13.02□□□□□ -0.33
CUX1-214ENST00000550008 CST4P01036 141 aa13.02□□□□□ -0.33
CUX1-214ENST00000550008 FCGR3AP08637 254 aa13.02□□□□□ -0.33
CUX1-214ENST00000550008 RD3LP0DJH9 198 aa13.02□□□□□ -0.33
CUX1-214ENST00000550008 RCC1P18754 421 aaPredicted RBP13.02□□□□□ -0.33
CUX1-214ENST00000550008 CISD2Q8N5K1 135 aaKnown RBP13.02□□□□□ -0.33
CUX1-214ENST00000550008 NANPQ8TBE9 248 aa13.02□□□□□ -0.33
CUX1-214ENST00000550008 CCL17Q92583 94 aa13.02□□□□□ -0.33
CUX1-214ENST00000550008 NKX2-6A6NCS4 301 aa13.01□□□□□ -0.33
CUX1-214ENST00000550008 CDRT15L2A8MXV6 281 aa13.01□□□□□ -0.33
CUX1-214ENST00000550008 LPAR6P43657 344 aa13.01□□□□□ -0.33
CUX1-214ENST00000550008 ZP1P60852 638 aa13.01□□□□□ -0.33
CUX1-214ENST00000550008 C22orf15Q8WYQ4 148 aa13.01□□□□□ -0.33
CUX1-214ENST00000550008 WNT5BQ9H1J7 359 aa13.01□□□□□ -0.33
CUX1-214ENST00000550008 SMCO4Q9NRQ5 59 aa13.01□□□□□ -0.33
CUX1-214ENST00000550008 OR5AC2Q9NZP5 309 aa13.01□□□□□ -0.33
CUX1-214ENST00000550008 KLF7O75840 302 aaPredicted RBP13.01□□□□□ -0.33
CUX1-214ENST00000550008 CLPSP04118 112 aa13.01□□□□□ -0.33
CUX1-214ENST00000550008 PTX4Q96A99 478 aa13.01□□□□□ -0.33
CUX1-214ENST00000550008 GPR137Q96N19 417 aa13.01□□□□□ -0.33
CUX1-214ENST00000550008 SCTP09683 121 aa13.01□□□□□ -0.33
CUX1-214ENST00000550008 ACKR3P25106 362 aa13.01□□□□□ -0.33
CUX1-214ENST00000550008 RBM11P57052 281 aaKnown RBP13.01□□□□□ -0.33
CUX1-214ENST00000550008 PINX1Q96BK5 328 aaKnown RBP13.01□□□□□ -0.33
CUX1-214ENST00000550008 RNASEK-C17orf49H0YIS7 233 aa13□□□□□ -0.33
CUX1-214ENST00000550008 GPR37O15354 613 aa13□□□□□ -0.33
CUX1-214ENST00000550008 BTCP35070 178 aa13□□□□□ -0.33
CUX1-214ENST00000550008 HES1Q14469 280 aa13□□□□□ -0.33
CUX1-214ENST00000550008 FAHD2BQ6P2I3 314 aaPredicted RBP13□□□□□ -0.33
CUX1-214ENST00000550008 ZNF441Q8N8Z8 693 aa13□□□□□ -0.33
CUX1-214ENST00000550008 AQP3Q92482 292 aa13□□□□□ -0.33
CUX1-214ENST00000550008 FAHD2AQ96GK7 314 aa13□□□□□ -0.33
CUX1-214ENST00000550008 S1PR3Q99500 378 aa13□□□□□ -0.33
CUX1-214ENST00000550008 DHODHQ02127 395 aa13□□□□□ -0.33
CUX1-214ENST00000550008 NECAP1Q8NC96 275 aa13□□□□□ -0.33
CUX1-214ENST00000550008 ASB13Q8WXK3 278 aa13□□□□□ -0.33
CUX1-214ENST00000550008 RAB39BQ96DA2 213 aa13□□□□□ -0.33
CUX1-214ENST00000550008 GNPNAT1Q96EK6 184 aaPredicted RBP13□□□□□ -0.33
CUX1-214ENST00000550008 NPDC1Q9NQX5 325 aaPredicted RBP13□□□□□ -0.33
CUX1-214ENST00000550008 STRAPQ9Y3F4 350 aaKnown RBP13□□□□□ -0.33
CUX1-214ENST00000550008 KPTNQ9Y664 436 aa13□□□□□ -0.33
CUX1-214ENST00000550008 HNF1AP20823 631 aa13□□□□□ -0.33
CUX1-214ENST00000550008 AESQ08117 197 aa13□□□□□ -0.33
CUX1-214ENST00000550008 PLAC9Q5JTB6 97 aa13□□□□□ -0.33
CUX1-214ENST00000550008 RBMS3Q6XE24 437 aaKnown RBP13□□□□□ -0.33
CUX1-214ENST00000550008 LIAT1Q6ZQX7 453 aa13□□□□□ -0.33
CUX1-214ENST00000550008 LYG1Q8N1E2 194 aa13□□□□□ -0.33
CUX1-214ENST00000550008 ZNF524Q96C55 264 aa13□□□□□ -0.33
CUX1-214ENST00000550008 SPG11Q96JI7 2443 aa13□□□□□ -0.33
CUX1-214ENST00000550008 IGHMP01871 453 aa12.99□□□□□ -0.33
CUX1-214ENST00000550008 CRYABP02511 175 aaKnown RBP12.99□□□□□ -0.33
CUX1-214ENST00000550008 CEBPDP49716 269 aaPredicted RBP12.99□□□□□ -0.33
CUX1-214ENST00000550008 EIF2S3LQ2VIR3 472 aaKnown RBP12.99□□□□□ -0.33
CUX1-214ENST00000550008 PDZD11Q5EBL8 140 aa12.99□□□□□ -0.33
CUX1-214ENST00000550008 SLC26A1Q9H2B4 701 aa12.99□□□□□ -0.33
CUX1-214ENST00000550008 AMDHD2Q9Y303 409 aa12.99□□□□□ -0.33
CUX1-214ENST00000550008 NOTCH3Q9UM47 2321 aa12.99□□□□□ -0.33
CUX1-214ENST00000550008 TMEM14DPA8MWL7 114 aa12.99□□□□□ -0.33
CUX1-214ENST00000550008 MRGPRFQ96AM1 343 aa12.99□□□□□ -0.33
CUX1-214ENST00000550008 C10orf35Q96D05 121 aa12.99□□□□□ -0.33
CUX1-214ENST00000550008 ALX4Q9H161 411 aaPredicted RBP12.99□□□□□ -0.33
CUX1-214ENST00000550008 GPR132Q9UNW8 380 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms