RNA–Protein interactions for RNA: ENST00000545707.5

LDLR-204, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,429 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-204ENST00000545707 ACER2Q5QJU3 275 aa13.57□□□□□ -0.24
LDLR-204ENST00000545707 SELENOHQ8IZQ5 122 aaKnown RBP13.57□□□□□ -0.24
LDLR-204ENST00000545707 NEK7Q8TDX7 302 aa13.57□□□□□ -0.24
LDLR-204ENST00000545707 ZNF488Q96MN9 340 aa13.57□□□□□ -0.24
LDLR-204ENST00000545707 C1QTNF5Q9BXJ0 243 aa13.57□□□□□ -0.24
LDLR-204ENST00000545707 SLC35B3Q9H1N7 401 aa13.57□□□□□ -0.24
LDLR-204ENST00000545707 CCL28Q9NRJ3 127 aa13.57□□□□□ -0.24
LDLR-204ENST00000545707 GLRX2Q9NS18 164 aa13.57□□□□□ -0.24
LDLR-204ENST00000545707 AHCTF1Q8WYP5 2266 aa13.57□□□□□ -0.24
LDLR-204ENST00000545707 C5orf49A4QMS7 147 aa13.56□□□□□ -0.24
LDLR-204ENST00000545707 C5orf52A6NGY3 159 aa13.56□□□□□ -0.24
LDLR-204ENST00000545707 MT-ND4LP03901 98 aa13.56□□□□□ -0.24
LDLR-204ENST00000545707 IFNA4P05014 189 aa13.56□□□□□ -0.24
LDLR-204ENST00000545707 CELA3AP09093 270 aa13.56□□□□□ -0.24
LDLR-204ENST00000545707 SULT1A1P50225 295 aa13.56□□□□□ -0.24
LDLR-204ENST00000545707 CTAG1AP78358 180 aa13.56□□□□□ -0.24
LDLR-204ENST00000545707 RUNX1Q01196 453 aa13.56□□□□□ -0.24
LDLR-204ENST00000545707 PRDX4Q13162 271 aa13.56□□□□□ -0.24
LDLR-204ENST00000545707 LILRB1Q8NHL6 650 aaPredicted RBP13.56□□□□□ -0.24
LDLR-204ENST00000545707 C11orf1Q9H5F2 150 aa13.56□□□□□ -0.24
LDLR-204ENST00000545707 ATXN7O15265 892 aaPredicted RBP13.56□□□□□ -0.24
LDLR-204ENST00000545707 FBP1P09467 338 aa13.56□□□□□ -0.24
LDLR-204ENST00000545707 ZNF14P17017 642 aaPredicted RBP13.56□□□□□ -0.24
LDLR-204ENST00000545707 EPHA1P21709 976 aa13.56□□□□□ -0.24
LDLR-204ENST00000545707 LMO1P25800 156 aa13.56□□□□□ -0.24
LDLR-204ENST00000545707 TRIM61Q5EBN2 209 aa13.56□□□□□ -0.24
LDLR-204ENST00000545707 ODF3L1Q8IXM7 274 aa13.56□□□□□ -0.24
LDLR-204ENST00000545707 COMMD1Q8N668 190 aa13.56□□□□□ -0.24
LDLR-204ENST00000545707 ZNF565Q8N9K5 539 aa13.56□□□□□ -0.24
LDLR-204ENST00000545707 OR5C1Q8NGR4 320 aa13.56□□□□□ -0.24
LDLR-204ENST00000545707 MTCH1Q9NZJ7 389 aa13.56□□□□□ -0.24
LDLR-204ENST00000545707 ZNF391Q9UJN7 358 aa13.56□□□□□ -0.24
LDLR-204ENST00000545707 NOSIPQ9Y314 301 aaKnown RBP13.56□□□□□ -0.24
LDLR-204ENST00000545707 URB1O60287 2271 aaKnown RBP13.56□□□□□ -0.24
LDLR-204ENST00000545707 IGKV1-6A0A0C4DH72 117 aa13.55□□□□□ -0.24
LDLR-204ENST00000545707 MRPL33O75394 65 aaKnown RBP13.55□□□□□ -0.24
LDLR-204ENST00000545707 NGFP01138 241 aa13.55□□□□□ -0.24
LDLR-204ENST00000545707 RIPPLY2Q5TAB7 128 aa13.55□□□□□ -0.24
LDLR-204ENST00000545707 TMEM252Q8N6L7 170 aa13.55□□□□□ -0.24
LDLR-204ENST00000545707 HES7Q9BYE0 225 aa13.55□□□□□ -0.24
LDLR-204ENST00000545707 IFT22Q9H7X7 185 aa13.55□□□□□ -0.24
LDLR-204ENST00000545707 CALHM2Q9HA72 323 aa13.55□□□□□ -0.24
LDLR-204ENST00000545707 Q9N2K0 584 aa13.55□□□□□ -0.24
LDLR-204ENST00000545707 TCFL5Q9UL49 500 aa13.55□□□□□ -0.24
LDLR-204ENST00000545707 STRAPQ9Y3F4 350 aaKnown RBP13.55□□□□□ -0.24
LDLR-204ENST00000545707 R4GN57 208 aa13.55□□□□□ -0.24
LDLR-204ENST00000545707 SLC22A20A6NK97 555 aa13.55□□□□□ -0.24
LDLR-204ENST00000545707 SYNGR1O43759 233 aa13.55□□□□□ -0.24
LDLR-204ENST00000545707 CYTIPO60759 359 aa13.55□□□□□ -0.24
LDLR-204ENST00000545707 TK1P04183 234 aa13.55□□□□□ -0.24
LDLR-204ENST00000545707 RAB5AP20339 215 aa13.55□□□□□ -0.24
LDLR-204ENST00000545707 AGAP20933 346 aa13.55□□□□□ -0.24
LDLR-204ENST00000545707 DYNLT3P51808 116 aa13.55□□□□□ -0.24
LDLR-204ENST00000545707 FABP9Q0Z7S8 132 aa13.55□□□□□ -0.24
LDLR-204ENST00000545707 HAGHQ16775 308 aa13.55□□□□□ -0.24
LDLR-204ENST00000545707 IZUMO4Q1ZYL8 232 aa13.55□□□□□ -0.24
LDLR-204ENST00000545707 SPSB4Q96A44 273 aa13.55□□□□□ -0.24
LDLR-204ENST00000545707 OR51B6Q9H340 312 aa13.55□□□□□ -0.24
LDLR-204ENST00000545707 CDS2O95674 445 aa13.54□□□□□ -0.24
LDLR-204ENST00000545707 PAX6P26367 422 aa13.54□□□□□ -0.24
LDLR-204ENST00000545707 RAB5CP51148 216 aa13.54□□□□□ -0.24
LDLR-204ENST00000545707 C20orf204Q6ZNR8 217 aa13.54□□□□□ -0.24
LDLR-204ENST00000545707 TIPARPQ7Z3E1 657 aaKnown RBP13.54□□□□□ -0.24
LDLR-204ENST00000545707 ZNF561Q8N587 486 aa13.54□□□□□ -0.24
LDLR-204ENST00000545707 PBDC1Q9BVG4 233 aa13.54□□□□□ -0.24
LDLR-204ENST00000545707 PRDM6Q9NQX0 595 aa13.54□□□□□ -0.24
LDLR-204ENST00000545707 PLSCR2Q9NRY7 297 aa13.54□□□□□ -0.24
LDLR-204ENST00000545707 DOCK7Q96N67 2140 aa13.54□□□□□ -0.24
LDLR-204ENST00000545707 ZNF732B4DXR9 585 aa13.54□□□□□ -0.24
LDLR-204ENST00000545707 H3BP45 60 aa13.54□□□□□ -0.24
LDLR-204ENST00000545707 ZNF806P0C7X5 589 aa13.54□□□□□ -0.24
LDLR-204ENST00000545707 NQO2P16083 231 aa13.54□□□□□ -0.24
LDLR-204ENST00000545707 CYB561P49447 251 aa13.54□□□□□ -0.24
LDLR-204ENST00000545707 GFRA1P56159 465 aa13.54□□□□□ -0.24
LDLR-204ENST00000545707 ZNF154Q13106 437 aa13.54□□□□□ -0.24
LDLR-204ENST00000545707 SOHLH1Q5JUK2 328 aa13.54□□□□□ -0.24
LDLR-204ENST00000545707 SPSB3Q6PJ21 355 aa13.54□□□□□ -0.24
LDLR-204ENST00000545707 TUSC5Q8IXB3 177 aa13.54□□□□□ -0.24
LDLR-204ENST00000545707 TMEM56Q96MV1 263 aa13.54□□□□□ -0.24
LDLR-204ENST00000545707 REPIN1Q9BWE0 567 aaKnown RBP13.54□□□□□ -0.24
LDLR-204ENST00000545707 PRDM14Q9GZV8 571 aa13.54□□□□□ -0.24
LDLR-204ENST00000545707 ZNF552Q9H707 407 aaPredicted RBP13.54□□□□□ -0.24
LDLR-204ENST00000545707 TMEM56-RWDD3S4R434 201 aa13.54□□□□□ -0.24
LDLR-204ENST00000545707 ZNF727A8MUV8 499 aa13.53□□□□□ -0.24
LDLR-204ENST00000545707 HS3ST1O14792 307 aa13.53□□□□□ -0.24
LDLR-204ENST00000545707 CHST1O43916 411 aa13.53□□□□□ -0.24
LDLR-204ENST00000545707 LILRA1O75019 489 aa13.53□□□□□ -0.24
LDLR-204ENST00000545707 B2MP61769 119 aa13.53□□□□□ -0.24
LDLR-204ENST00000545707 VAMP2P63027 116 aa13.53□□□□□ -0.24
LDLR-204ENST00000545707 FOXO1Q12778 655 aa13.53□□□□□ -0.24
LDLR-204ENST00000545707 LPAL2Q16609 132 aa13.53□□□□□ -0.24
LDLR-204ENST00000545707 SUMF2Q8NBJ7 301 aa13.53□□□□□ -0.24
LDLR-204ENST00000545707 CPNE4Q96A23 557 aaPredicted RBP13.53□□□□□ -0.24
LDLR-204ENST00000545707 PLEKHF2Q9H8W4 249 aa13.53□□□□□ -0.24
LDLR-204ENST00000545707 ZDBF2Q9HCK1 2354 aa13.53□□□□□ -0.24
LDLR-204ENST00000545707 TRAV39A0A0B4J263 110 aa13.53□□□□□ -0.24
LDLR-204ENST00000545707 PRSS44E7EML9 344 aa13.53□□□□□ -0.24
LDLR-204ENST00000545707 NAPSAO96009 420 aa13.53□□□□□ -0.24
LDLR-204ENST00000545707 RNF212Q495C1 297 aa13.53□□□□□ -0.24
LDLR-204ENST00000545707 COLCA1Q6ZS62 124 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms