RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 ZNF154Q13106 437 aa12.93□□□□□ -0.34
USP28-214ENST00000545540 GNMTQ14749 295 aa12.93□□□□□ -0.34
USP28-214ENST00000545540 EXT1Q16394 746 aa12.93□□□□□ -0.34
USP28-214ENST00000545540 ZNF239Q16600 458 aaKnown RBP12.93□□□□□ -0.34
USP28-214ENST00000545540 ACER2Q5QJU3 275 aa12.93□□□□□ -0.34
USP28-214ENST00000545540 ZNF343Q6P1L6 599 aa12.93□□□□□ -0.34
USP28-214ENST00000545540 LHFPL2Q6ZUX7 228 aa12.93□□□□□ -0.34
USP28-214ENST00000545540 OR5C1Q8NGR4 320 aa12.93□□□□□ -0.34
USP28-214ENST00000545540 ZNF552Q9H707 407 aaPredicted RBP12.93□□□□□ -0.34
USP28-214ENST00000545540 DMXL2Q8TDJ6 3036 aa12.93□□□□□ -0.34
USP28-214ENST00000545540 TTC28Q96AY4 2481 aa12.93□□□□□ -0.34
USP28-214ENST00000545540 OR6C6A6NF89 314 aa12.93□□□□□ -0.34
USP28-214ENST00000545540 RRP8O43159 456 aaKnown RBP12.93□□□□□ -0.34
USP28-214ENST00000545540 FUT3P21217 361 aa12.93□□□□□ -0.34
USP28-214ENST00000545540 ATP6V0CP27449 155 aa12.93□□□□□ -0.34
USP28-214ENST00000545540 EIF2S3LQ2VIR3 472 aaKnown RBP12.93□□□□□ -0.34
USP28-214ENST00000545540 C12orf49Q9H741 205 aa12.93□□□□□ -0.34
USP28-214ENST00000545540 KCNJ16Q9NPI9 418 aa12.93□□□□□ -0.34
USP28-214ENST00000545540 LUZP4Q9P127 313 aa12.93□□□□□ -0.34
USP28-214ENST00000545540 NOSIPQ9Y314 301 aaKnown RBP12.93□□□□□ -0.34
USP28-214ENST00000545540 STARD10Q9Y365 291 aa12.93□□□□□ -0.34
USP28-214ENST00000545540 ROS1P08922 2347 aa12.93□□□□□ -0.34
USP28-214ENST00000545540 APOC1P02654 83 aa12.93□□□□□ -0.34
USP28-214ENST00000545540 ZNF16P17020 682 aaPredicted RBP12.93□□□□□ -0.34
USP28-214ENST00000545540 IL11RAQ14626 422 aa12.93□□□□□ -0.34
USP28-214ENST00000545540 HERPUD1Q15011 391 aa12.93□□□□□ -0.34
USP28-214ENST00000545540 HPSE2Q8WWQ2 592 aa12.93□□□□□ -0.34
USP28-214ENST00000545540 GLRX2Q9NS18 164 aa12.93□□□□□ -0.34
USP28-214ENST00000545540 USF3Q68DE3 2245 aa12.92□□□□□ -0.34
USP28-214ENST00000545540 C1orf196B1AJZ1 125 aa12.92□□□□□ -0.34
USP28-214ENST00000545540 ZNF732B4DXR9 585 aa12.92□□□□□ -0.34
USP28-214ENST00000545540 GPR137BO60478 399 aa12.92□□□□□ -0.34
USP28-214ENST00000545540 MRPL33O75394 65 aaKnown RBP12.92□□□□□ -0.34
USP28-214ENST00000545540 NKX2-1P43699 371 aaPredicted RBP12.92□□□□□ -0.34
USP28-214ENST00000545540 ZXDAP98168 799 aa12.92□□□□□ -0.34
USP28-214ENST00000545540 OR2C3Q8N628 320 aa12.92□□□□□ -0.34
USP28-214ENST00000545540 ZNF565Q8N9K5 539 aa12.92□□□□□ -0.34
USP28-214ENST00000545540 OR2V1Q8NHB1 315 aa12.92□□□□□ -0.34
USP28-214ENST00000545540 MOB3AQ96BX8 217 aa12.92□□□□□ -0.34
USP28-214ENST00000545540 SCRT1Q9BWW7 348 aa12.92□□□□□ -0.34
USP28-214ENST00000545540 PLEKHA2Q9HB19 425 aa12.92□□□□□ -0.34
USP28-214ENST00000545540 H7C1Q1 480 aa12.92□□□□□ -0.34
USP28-214ENST00000545540 CST2P09228 141 aa12.92□□□□□ -0.34
USP28-214ENST00000545540 P2RY1P47900 373 aa12.92□□□□□ -0.34
USP28-214ENST00000545540 FUT6P51993 359 aa12.92□□□□□ -0.34
USP28-214ENST00000545540 RPS16P62249 146 aaKnown RBP12.92□□□□□ -0.34
USP28-214ENST00000545540 PRDX4Q13162 271 aa12.92□□□□□ -0.34
USP28-214ENST00000545540 PMS2CLQ68D20 193 aa12.92□□□□□ -0.34
USP28-214ENST00000545540 FOXL2NBQ6ZUU3 175 aa12.92□□□□□ -0.34
USP28-214ENST00000545540 PPP1R32Q7Z5V6 425 aa12.92□□□□□ -0.34
USP28-214ENST00000545540 SIGLEC12Q96PQ1 595 aa12.92□□□□□ -0.34
USP28-214ENST00000545540 SYT3Q9BQG1 590 aa12.92□□□□□ -0.34
USP28-214ENST00000545540 WDR54Q9H977 334 aa12.92□□□□□ -0.34
USP28-214ENST00000545540 MTCH1Q9NZJ7 389 aa12.92□□□□□ -0.34
USP28-214ENST00000545540 LIPGQ9Y5X9 500 aa12.92□□□□□ -0.34
USP28-214ENST00000545540 WRBO00258 174 aa12.91□□□□□ -0.34
USP28-214ENST00000545540 SULT1A1P50225 295 aa12.91□□□□□ -0.34
USP28-214ENST00000545540 RAB5BP61020 215 aa12.91□□□□□ -0.34
USP28-214ENST00000545540 FAM53AQ6NSI3 398 aaPredicted RBP12.91□□□□□ -0.34
USP28-214ENST00000545540 DMXL1Q9Y485 3027 aa12.91□□□□□ -0.34
USP28-214ENST00000545540 CADP27708 2225 aa12.91□□□□□ -0.34
USP28-214ENST00000545540 A0A0G2JRQ6 117 aa12.91□□□□□ -0.34
USP28-214ENST00000545540 ZNF816-ZNF321PA0A0X1KG74 233 aa12.91□□□□□ -0.34
USP28-214ENST00000545540 PROB1E7EW31 1015 aa12.91□□□□□ -0.34
USP28-214ENST00000545540 H0YL77 283 aa12.91□□□□□ -0.34
USP28-214ENST00000545540 CHST1O43916 411 aa12.91□□□□□ -0.34
USP28-214ENST00000545540 GAPDHP04406 335 aaKnown RBP12.91□□□□□ -0.34
USP28-214ENST00000545540 PTAFRP25105 342 aa12.91□□□□□ -0.34
USP28-214ENST00000545540 DYNLT3P51808 116 aa12.91□□□□□ -0.34
USP28-214ENST00000545540 TMEM267Q0VDI3 215 aaPredicted RBP12.91□□□□□ -0.34
USP28-214ENST00000545540 ARL6IP1Q15041 203 aa12.91□□□□□ -0.34
USP28-214ENST00000545540 THOC3Q96J01 351 aaKnown RBP12.91□□□□□ -0.34
USP28-214ENST00000545540 SH2D2AQ9NP31 389 aa12.91□□□□□ -0.34
USP28-214ENST00000545540 LRFN1Q9P244 771 aa12.91□□□□□ -0.34
USP28-214ENST00000545540 HSF4Q9ULV5 492 aa12.91□□□□□ -0.34
USP28-214ENST00000545540 ATMQ13315 3056 aa12.91□□□□□ -0.34
USP28-214ENST00000545540 IGKV1-6A0A0C4DH72 117 aa12.91□□□□□ -0.34
USP28-214ENST00000545540 CPT1CQ8TCG5 803 aa12.91□□□□□ -0.34
USP28-214ENST00000545540 BOD1Q96IK1 185 aa12.91□□□□□ -0.34
USP28-214ENST00000545540 TCFL5Q9UL49 500 aa12.91□□□□□ -0.34
USP28-214ENST00000545540 TRBV23-1A0A0A0MS06 115 aa12.9□□□□□ -0.34
USP28-214ENST00000545540 DTYMKP23919 212 aa12.9□□□□□ -0.34
USP28-214ENST00000545540 SRD5A2P31213 254 aa12.9□□□□□ -0.34
USP28-214ENST00000545540 PDZD11Q5EBL8 140 aa12.9□□□□□ -0.34
USP28-214ENST00000545540 DPPA2Q7Z7J5 298 aa12.9□□□□□ -0.34
USP28-214ENST00000545540 CLDN23Q96B33 292 aa12.9□□□□□ -0.34
USP28-214ENST00000545540 GALNT14Q96FL9 552 aa12.9□□□□□ -0.34
USP28-214ENST00000545540 NIT2Q9NQR4 276 aa12.9□□□□□ -0.34
USP28-214ENST00000545540 DECR2Q9NUI1 292 aa12.9□□□□□ -0.34
USP28-214ENST00000545540 RHBDL1O75783 438 aa12.9□□□□□ -0.34
USP28-214ENST00000545540 CYB561P49447 251 aa12.9□□□□□ -0.34
USP28-214ENST00000545540 M1APQ8TC57 530 aa12.9□□□□□ -0.34
USP28-214ENST00000545540 KLF2Q9Y5W3 355 aaPredicted RBP12.9□□□□□ -0.34
USP28-214ENST00000545540 KPTNQ9Y664 436 aa12.9□□□□□ -0.34
USP28-214ENST00000545540 CNOT4O95628 575 aaKnown RBP12.9□□□□□ -0.35
USP28-214ENST00000545540 TFF1P04155 84 aa12.9□□□□□ -0.35
USP28-214ENST00000545540 MAGEA5P43359 124 aa12.9□□□□□ -0.35
USP28-214ENST00000545540 VAMP2P63027 116 aa12.9□□□□□ -0.35
USP28-214ENST00000545540 OR1K1Q8NGR3 316 aa12.9□□□□□ -0.35
USP28-214ENST00000545540 LILRB1Q8NHL6 650 aaPredicted RBP12.9□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms