RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 C16orf82Q7Z2V1 217 aa12.5□□□□□ -0.41
LIMS1-215ENST00000544547 CMTM2Q8TAZ6 248 aa12.5□□□□□ -0.41
LIMS1-215ENST00000544547 CYTL1Q9NRR1 136 aa12.5□□□□□ -0.41
LIMS1-215ENST00000544547 FOLR2P14207 255 aa12.5□□□□□ -0.41
LIMS1-215ENST00000544547 FOXF1Q12946 379 aa12.5□□□□□ -0.41
LIMS1-215ENST00000544547 RAB24Q969Q5 203 aa12.5□□□□□ -0.41
LIMS1-215ENST00000544547 MYOZ1Q9NP98 299 aaPredicted RBP12.5□□□□□ -0.41
LIMS1-215ENST00000544547 APOA2P02652 100 aa12.5□□□□□ -0.41
LIMS1-215ENST00000544547 ASAH2BP0C7U1 165 aa12.5□□□□□ -0.41
LIMS1-215ENST00000544547 OR3A1P47881 315 aa12.5□□□□□ -0.41
LIMS1-215ENST00000544547 RPP30P78346 268 aaKnown RBP12.5□□□□□ -0.41
LIMS1-215ENST00000544547 UNC119Q13432 240 aa12.5□□□□□ -0.41
LIMS1-215ENST00000544547 Q6ZN92 141 aa12.5□□□□□ -0.41
LIMS1-215ENST00000544547 YRDCQ86U90 279 aaKnown RBP12.5□□□□□ -0.41
LIMS1-215ENST00000544547 GTF3AQ92664 365 aaKnown RBP12.5□□□□□ -0.41
LIMS1-215ENST00000544547 UHRF2Q96PU4 802 aa12.5□□□□□ -0.41
LIMS1-215ENST00000544547 ABHD14AQ9BUJ0 271 aa12.5□□□□□ -0.41
LIMS1-215ENST00000544547 FAM166BA8MTA8 275 aa12.49□□□□□ -0.41
LIMS1-215ENST00000544547 B4DEV8 164 aa12.49□□□□□ -0.41
LIMS1-215ENST00000544547 CD5P06127 495 aa12.49□□□□□ -0.41
LIMS1-215ENST00000544547 CCL11P51671 97 aa12.49□□□□□ -0.41
LIMS1-215ENST00000544547 FAM3BP58499 235 aaPredicted RBP12.49□□□□□ -0.41
LIMS1-215ENST00000544547 RBPJQ06330 500 aa12.49□□□□□ -0.41
LIMS1-215ENST00000544547 TEX30Q5JUR7 227 aa12.49□□□□□ -0.41
LIMS1-215ENST00000544547 TMEM178AQ8NBL3 297 aa12.49□□□□□ -0.41
LIMS1-215ENST00000544547 RSG1Q9BU20 258 aa12.49□□□□□ -0.41
LIMS1-215ENST00000544547 RNF150Q9ULK6 438 aa12.49□□□□□ -0.41
LIMS1-215ENST00000544547 KIAA1324LA8MWY0 1029 aaPredicted RBP12.49□□□□□ -0.41
LIMS1-215ENST00000544547 F6UZH7 168 aa12.49□□□□□ -0.41
LIMS1-215ENST00000544547 KLRC4-KLRK1H3BQV0 150 aa12.49□□□□□ -0.41
LIMS1-215ENST00000544547 NRASP01111 189 aa12.49□□□□□ -0.41
LIMS1-215ENST00000544547 SOD3P08294 240 aa12.49□□□□□ -0.41
LIMS1-215ENST00000544547 FAM157CP0CG43 387 aa12.49□□□□□ -0.41
LIMS1-215ENST00000544547 C1orf100Q5SVJ3 147 aa12.49□□□□□ -0.41
LIMS1-215ENST00000544547 Q9N2K0 584 aa12.49□□□□□ -0.41
LIMS1-215ENST00000544547 KLF2Q9Y5W3 355 aaPredicted RBP12.49□□□□□ -0.41
LIMS1-215ENST00000544547 CLEC18AA5D8T8 446 aa12.49□□□□□ -0.41
LIMS1-215ENST00000544547 MYBPHQ13203 477 aa12.49□□□□□ -0.41
LIMS1-215ENST00000544547 SHISA5Q8N114 240 aa12.49□□□□□ -0.41
LIMS1-215ENST00000544547 OSR2Q8N2R0 312 aa12.49□□□□□ -0.41
LIMS1-215ENST00000544547 CLEC18CQ8NCF0 446 aa12.49□□□□□ -0.41
LIMS1-215ENST00000544547 OR10J5Q8NHC4 309 aa12.49□□□□□ -0.41
LIMS1-215ENST00000544547 PTX4Q96A99 478 aa12.49□□□□□ -0.41
LIMS1-215ENST00000544547 UBE2ZQ9H832 354 aaPredicted RBP12.49□□□□□ -0.41
LIMS1-215ENST00000544547 TUBA4BQ9H853 241 aa12.49□□□□□ -0.41
LIMS1-215ENST00000544547 NAT8Q9UHE5 227 aa12.49□□□□□ -0.41
LIMS1-215ENST00000544547 SPTAN1Q13813 2472 aaKnown RBP12.49□□□□□ -0.41
LIMS1-215ENST00000544547 IGKV1D-42A0A075B6H8 117 aa12.49□□□□□ -0.41
LIMS1-215ENST00000544547 FUT3P21217 361 aa12.49□□□□□ -0.41
LIMS1-215ENST00000544547 CCKARP32238 428 aa12.49□□□□□ -0.41
LIMS1-215ENST00000544547 ZXDAP98168 799 aa12.49□□□□□ -0.41
LIMS1-215ENST00000544547 EXT1Q16394 746 aa12.49□□□□□ -0.41
LIMS1-215ENST00000544547 TECTBQ96PL2 329 aa12.49□□□□□ -0.41
LIMS1-215ENST00000544547 C12orf49Q9H741 205 aa12.49□□□□□ -0.41
LIMS1-215ENST00000544547 TMEM9BQ9NQ34 198 aa12.49□□□□□ -0.41
LIMS1-215ENST00000544547 OR10J1P30954 320 aa12.48□□□□□ -0.41
LIMS1-215ENST00000544547 APOBEC1P41238 236 aaKnown RBP12.48□□□□□ -0.41
LIMS1-215ENST00000544547 GLIPR1P48060 266 aa12.48□□□□□ -0.41
LIMS1-215ENST00000544547 TMEM252Q8N6L7 170 aa12.48□□□□□ -0.41
LIMS1-215ENST00000544547 DMBX1Q8NFW5 382 aa12.48□□□□□ -0.41
LIMS1-215ENST00000544547 ZNF596Q8TC21 504 aa12.48□□□□□ -0.41
LIMS1-215ENST00000544547 ACTR3CQ9C0K3 210 aaPredicted RBP12.48□□□□□ -0.41
LIMS1-215ENST00000544547 FAM234AQ9H0X4 552 aa12.48□□□□□ -0.41
LIMS1-215ENST00000544547 A0A1W2PPC4 97 aa12.48□□□□□ -0.41
LIMS1-215ENST00000544547 DHRS7CA6NNS2 312 aa12.48□□□□□ -0.41
LIMS1-215ENST00000544547 CTSBP07858 339 aa12.48□□□□□ -0.41
LIMS1-215ENST00000544547 CXCL1P09341 107 aa12.48□□□□□ -0.41
LIMS1-215ENST00000544547 RANP62826 216 aaKnown RBP12.48□□□□□ -0.41
LIMS1-215ENST00000544547 CXorf66Q5JRM2 361 aaPredicted RBP12.48□□□□□ -0.41
LIMS1-215ENST00000544547 ADGRG7Q96K78 797 aa12.48□□□□□ -0.41
LIMS1-215ENST00000544547 TDRD6O60522 2096 aaKnown RBP12.48□□□□□ -0.41
LIMS1-215ENST00000544547 DOCK8Q8NF50 2099 aa12.48□□□□□ -0.41
LIMS1-215ENST00000544547 CYB5R3P00387 301 aaPredicted RBP12.48□□□□□ -0.41
LIMS1-215ENST00000544547 RPS4Y1P22090 263 aaKnown RBP12.48□□□□□ -0.41
LIMS1-215ENST00000544547 DTYMKP23919 212 aa12.48□□□□□ -0.41
LIMS1-215ENST00000544547 HEPN1Q6WQI6 88 aa12.48□□□□□ -0.41
LIMS1-215ENST00000544547 TWSG1Q9GZX9 223 aa12.48□□□□□ -0.41
LIMS1-215ENST00000544547 NGBQ9NPG2 151 aa12.48□□□□□ -0.41
LIMS1-215ENST00000544547 M0QZK8 103 aa12.47□□□□□ -0.41
LIMS1-215ENST00000544547 GGCTO75223 188 aaKnown RBP12.47□□□□□ -0.41
LIMS1-215ENST00000544547 FSTP19883 344 aa12.47□□□□□ -0.41
LIMS1-215ENST00000544547 IL11P20809 199 aa12.47□□□□□ -0.41
LIMS1-215ENST00000544547 C9orf50Q5SZB4 431 aa12.47□□□□□ -0.41
LIMS1-215ENST00000544547 VAMP5O95183 116 aa12.47□□□□□ -0.41
LIMS1-215ENST00000544547 EDDM3BP56851 147 aa12.47□□□□□ -0.41
LIMS1-215ENST00000544547 STARD6P59095 220 aa12.47□□□□□ -0.41
LIMS1-215ENST00000544547 ZNF468Q5VIY5 522 aaPredicted RBP12.47□□□□□ -0.41
LIMS1-215ENST00000544547 TDHQ8IZJ6 230 aa12.47□□□□□ -0.41
LIMS1-215ENST00000544547 WBP1LQ9NX94 342 aa12.47□□□□□ -0.41
LIMS1-215ENST00000544547 MYF5P13349 255 aa12.47□□□□□ -0.41
LIMS1-215ENST00000544547 CAPZBP47756 277 aa12.47□□□□□ -0.41
LIMS1-215ENST00000544547 AMTP48728 403 aa12.47□□□□□ -0.41
LIMS1-215ENST00000544547 GNG10P50151 68 aa12.47□□□□□ -0.41
LIMS1-215ENST00000544547 CCL20P78556 96 aa12.47□□□□□ -0.41
LIMS1-215ENST00000544547 TBC1D26Q86UD7 250 aa12.47□□□□□ -0.41
LIMS1-215ENST00000544547 ZNF808Q8N4W9 903 aaPredicted RBP12.47□□□□□ -0.41
LIMS1-215ENST00000544547 APH1AQ96BI3 265 aa12.47□□□□□ -0.41
LIMS1-215ENST00000544547 PMS2P1A4D2B8 440 aa12.47□□□□□ -0.41
LIMS1-215ENST00000544547 C17orf112F2Z3M2 114 aa12.47□□□□□ -0.41
LIMS1-215ENST00000544547 GCGP01275 180 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms