RNA–Protein interactions for RNA: ENST00000541259.1

DDX55-208, Transcript of DEAD-box helicase 55, human

TSL 3

Gene DDX55, Length 460 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX55-208	ENST00000541259	TMEM155	Q4W5P6	130 aa		7.76	□□□□□ -1.17
DDX55-208	ENST00000541259	PAN3	Q58A45	887 aa	Known RBP	7.76	□□□□□ -1.17
DDX55-208	ENST00000541259		Q5PR19	223 aa		7.76	□□□□□ -1.17
DDX55-208	ENST00000541259	TMEM69	Q5SWH9	247 aa		7.76	□□□□□ -1.17
DDX55-208	ENST00000541259	ZNF841	Q6ZN19	808 aa		7.76	□□□□□ -1.17
DDX55-208	ENST00000541259	DCDC5	Q6ZRR9	648 aa		7.76	□□□□□ -1.17
DDX55-208	ENST00000541259	MUC20	Q8N307	709 aa	Predicted RBP	7.76	□□□□□ -1.17
DDX55-208	ENST00000541259	TMEM185A	Q8NFB2	350 aa		7.76	□□□□□ -1.17
DDX55-208	ENST00000541259	OR4M2	Q8NGB6	313 aa		7.76	□□□□□ -1.17
DDX55-208	ENST00000541259	CLDND2	Q8NHS1	167 aa		7.76	□□□□□ -1.17
DDX55-208	ENST00000541259	ST8SIA4	Q92187	359 aa		7.76	□□□□□ -1.17
DDX55-208	ENST00000541259	GCDH	Q92947	438 aa	Predicted RBP	7.76	□□□□□ -1.17
DDX55-208	ENST00000541259	PHF21A	Q96BD5	680 aa		7.76	□□□□□ -1.17
DDX55-208	ENST00000541259	SNX22	Q96L94	193 aa		7.76	□□□□□ -1.17
DDX55-208	ENST00000541259	NEDD4L	Q96PU5	975 aa		7.76	□□□□□ -1.17
DDX55-208	ENST00000541259	SOST	Q9BQB4	213 aa		7.76	□□□□□ -1.17
DDX55-208	ENST00000541259	HDHD3	Q9BSH5	251 aa	Predicted RBP	7.76	□□□□□ -1.17
DDX55-208	ENST00000541259	ING3	Q9NXR8	418 aa		7.76	□□□□□ -1.17
DDX55-208	ENST00000541259	AK3	Q9UIJ7	227 aa		7.76	□□□□□ -1.17
DDX55-208	ENST00000541259	ADAM30	Q9UKF2	790 aa		7.76	□□□□□ -1.17
DDX55-208	ENST00000541259	ITPR3	Q14573	2671 aa		7.75	□□□□□ -1.17
DDX55-208	ENST00000541259	IGHV4-61	A0A0C4DH41	118 aa		7.75	□□□□□ -1.17
DDX55-208	ENST00000541259	MEX3A	A1L020	520 aa	Known RBP	7.75	□□□□□ -1.17
DDX55-208	ENST00000541259	MEIOC	A2RUB1	952 aa		7.75	□□□□□ -1.17
DDX55-208	ENST00000541259	TMEM235	A6NFC5	223 aa		7.75	□□□□□ -1.17
DDX55-208	ENST00000541259	FABP12	A6NFH5	140 aa		7.75	□□□□□ -1.17
DDX55-208	ENST00000541259	MCRIP1	C9JLW8	97 aa		7.75	□□□□□ -1.17
DDX55-208	ENST00000541259		F5H0A9	414 aa	Predicted RBP	7.75	□□□□□ -1.17
DDX55-208	ENST00000541259		K7N7A8	449 aa		7.75	□□□□□ -1.17
DDX55-208	ENST00000541259	NDUFS8	O00217	210 aa		7.75	□□□□□ -1.17
DDX55-208	ENST00000541259	MFNG	O00587	321 aa		7.75	□□□□□ -1.17
DDX55-208	ENST00000541259	DVL1	O14640	695 aa		7.75	□□□□□ -1.17
DDX55-208	ENST00000541259	NDUFA2	O43678	99 aa		7.75	□□□□□ -1.17
DDX55-208	ENST00000541259	EIF4EBP3	O60516	100 aa	Predicted RBP	7.75	□□□□□ -1.17
DDX55-208	ENST00000541259	TK1	P04183	234 aa		7.75	□□□□□ -1.17
DDX55-208	ENST00000541259	RPS2	P15880	293 aa	Known RBP	7.75	□□□□□ -1.17
DDX55-208	ENST00000541259	HIST1H1D	P16402	221 aa	Known RBP	7.75	□□□□□ -1.17
DDX55-208	ENST00000541259	IL2RG	P31785	369 aa		7.75	□□□□□ -1.17
DDX55-208	ENST00000541259	DSCR9	P59020	149 aa		7.75	□□□□□ -1.17
DDX55-208	ENST00000541259	LMO4	P61968	165 aa		7.75	□□□□□ -1.17
DDX55-208	ENST00000541259	AES	Q08117	197 aa		7.75	□□□□□ -1.17
DDX55-208	ENST00000541259	ATXN7L3	Q14CW9	347 aa	Predicted RBP	7.75	□□□□□ -1.17
DDX55-208	ENST00000541259	GRK1	Q15835	563 aa		7.75	□□□□□ -1.17
DDX55-208	ENST00000541259	KCNJ8	Q15842	424 aa		7.75	□□□□□ -1.17
DDX55-208	ENST00000541259	FAM189A2	Q15884	450 aa		7.75	□□□□□ -1.17
DDX55-208	ENST00000541259	SLC36A1	Q7Z2H8	476 aa		7.75	□□□□□ -1.17
DDX55-208	ENST00000541259	SNX29P2	Q8IUI4	249 aa		7.75	□□□□□ -1.17
DDX55-208	ENST00000541259	MFSD4A	Q8N468	514 aa		7.75	□□□□□ -1.17
DDX55-208	ENST00000541259	ZNF561	Q8N587	486 aa		7.75	□□□□□ -1.17
DDX55-208	ENST00000541259	SPIC	Q8N5J4	248 aa		7.75	□□□□□ -1.17
DDX55-208	ENST00000541259	TPRX1	Q8N7U7	411 aa		7.75	□□□□□ -1.17
DDX55-208	ENST00000541259	COQ2	Q96H96	371 aa		7.75	□□□□□ -1.17
DDX55-208	ENST00000541259	MED30	Q96HR3	178 aa		7.75	□□□□□ -1.17
DDX55-208	ENST00000541259	ABHD1	Q96SE0	405 aa		7.75	□□□□□ -1.17
DDX55-208	ENST00000541259	DNTTIP1	Q9H147	329 aa		7.75	□□□□□ -1.17
DDX55-208	ENST00000541259	AUNIP	Q9H7T9	357 aa		7.75	□□□□□ -1.17
DDX55-208	ENST00000541259	PATZ1	Q9HBE1	687 aa	Known RBP	7.75	□□□□□ -1.17
DDX55-208	ENST00000541259	SPACA1	Q9HBV2	294 aa		7.75	□□□□□ -1.17
DDX55-208	ENST00000541259	KAAG1	Q9UBP8	84 aa		7.75	□□□□□ -1.17
DDX55-208	ENST00000541259	MIOX	Q9UGB7	285 aa		7.75	□□□□□ -1.17
DDX55-208	ENST00000541259	HSF4	Q9ULV5	492 aa		7.75	□□□□□ -1.17
DDX55-208	ENST00000541259	PCDHB10	Q9UN67	800 aa		7.75	□□□□□ -1.17
DDX55-208	ENST00000541259		V9GYH0	126 aa		7.75	□□□□□ -1.17
DDX55-208	ENST00000541259	SETX	Q7Z333	2677 aa	Known RBP	7.74	□□□□□ -1.17
DDX55-208	ENST00000541259		A0A096LNT2	108 aa		7.74	□□□□□ -1.17
DDX55-208	ENST00000541259		A0A0A6YYH2	397 aa		7.74	□□□□□ -1.17
DDX55-208	ENST00000541259	TRAV39	A0A0B4J263	110 aa		7.74	□□□□□ -1.17
DDX55-208	ENST00000541259		A6NJ64	397 aa		7.74	□□□□□ -1.17
DDX55-208	ENST00000541259	NDUFB3	O43676	98 aa		7.74	□□□□□ -1.17
DDX55-208	ENST00000541259	SSX5	O60225	188 aa		7.74	□□□□□ -1.17
DDX55-208	ENST00000541259	SCGN	O76038	276 aa		7.74	□□□□□ -1.17
DDX55-208	ENST00000541259	IGHV2-5	P01817	119 aa		7.74	□□□□□ -1.17
DDX55-208	ENST00000541259	NDUFB7	P17568	137 aa		7.74	□□□□□ -1.17
DDX55-208	ENST00000541259	TALDO1	P37837	337 aa		7.74	□□□□□ -1.17
DDX55-208	ENST00000541259	GLIPR1	P48060	266 aa		7.74	□□□□□ -1.17
DDX55-208	ENST00000541259	LSAMP	Q13449	338 aa		7.74	□□□□□ -1.17
DDX55-208	ENST00000541259	IL18	Q14116	193 aa		7.74	□□□□□ -1.17
DDX55-208	ENST00000541259	EDDM3A	Q14507	147 aa		7.74	□□□□□ -1.17
DDX55-208	ENST00000541259	ZNF79	Q15937	498 aa		7.74	□□□□□ -1.17
DDX55-208	ENST00000541259	RNASE12	Q5GAN4	147 aa	Known RBP	7.74	□□□□□ -1.17
DDX55-208	ENST00000541259	RSBN1	Q5VWQ0	802 aa	Predicted RBP	7.74	□□□□□ -1.17
DDX55-208	ENST00000541259	PRSS57	Q6UWY2	283 aa		7.74	□□□□□ -1.17
DDX55-208	ENST00000541259	FAM131A	Q6UXB0	335 aa		7.74	□□□□□ -1.17
DDX55-208	ENST00000541259		Q6ZPA2	131 aa		7.74	□□□□□ -1.17
DDX55-208	ENST00000541259	C5orf24	Q7Z6I8	188 aa		7.74	□□□□□ -1.17
DDX55-208	ENST00000541259	OR8H2	Q8N162	312 aa		7.74	□□□□□ -1.17
DDX55-208	ENST00000541259	WFDC11	Q8NEX6	87 aa		7.74	□□□□□ -1.17
DDX55-208	ENST00000541259	NEK7	Q8TDX7	302 aa		7.74	□□□□□ -1.17
DDX55-208	ENST00000541259	NUDCD2	Q8WVJ2	157 aa		7.74	□□□□□ -1.17
DDX55-208	ENST00000541259	NEIL1	Q96FI4	390 aa	Predicted RBP	7.74	□□□□□ -1.17
DDX55-208	ENST00000541259		Q96MF0	132 aa		7.74	□□□□□ -1.17
DDX55-208	ENST00000541259	FOXC2	Q99958	501 aa		7.74	□□□□□ -1.17
DDX55-208	ENST00000541259	NUDT16L1	Q9BRJ7	211 aa	Known RBP	7.74	□□□□□ -1.17
DDX55-208	ENST00000541259	DCTN5	Q9BTE1	182 aa		7.74	□□□□□ -1.17
DDX55-208	ENST00000541259	AKIP1	Q9NQ31	210 aa		7.74	□□□□□ -1.17
DDX55-208	ENST00000541259	EXOSC5	Q9NQT4	235 aa	Known RBP eCLIP	7.74	□□□□□ -1.17
DDX55-208	ENST00000541259	ETAA1	Q9NY74	926 aa		7.74	□□□□□ -1.17
DDX55-208	ENST00000541259	SLC25A10	Q9UBX3	287 aa	Predicted RBP	7.74	□□□□□ -1.17
DDX55-208	ENST00000541259	ITGB1BP2	Q9UKP3	347 aa		7.74	□□□□□ -1.17
DDX55-208	ENST00000541259	PRPF8	Q6P2Q9	2335 aa	Known RBP eCLIP	7.74	□□□□□ -1.17	1e-9	■■■■■ 29.7

Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms