RNA–Protein interactions for RNA: ENST00000539559.6

TMEM260-203, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 2,680 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-203ENST00000539559 ZNF266Q14584 549 aa17.48■□□□□ 0.39
TMEM260-203ENST00000539559 IZUMO4Q1ZYL8 232 aa17.48■□□□□ 0.39
TMEM260-203ENST00000539559 C4orf17Q53FE4 359 aa17.48■□□□□ 0.39
TMEM260-203ENST00000539559 ZNF600Q6ZNG1 722 aa17.48■□□□□ 0.39
TMEM260-203ENST00000539559 ZNF818PQ6ZRF7 136 aa17.48■□□□□ 0.39
TMEM260-203ENST00000539559 SLC25A26Q70HW3 274 aa17.48■□□□□ 0.39
TMEM260-203ENST00000539559 CCDC71LQ8N9Z2 235 aa17.48■□□□□ 0.39
TMEM260-203ENST00000539559 OR1F12Q8NHA8 337 aa17.48■□□□□ 0.39
TMEM260-203ENST00000539559 GPR61Q9BZJ8 451 aa17.48■□□□□ 0.39
TMEM260-203ENST00000539559 TMEM222Q9H0R3 208 aa17.48■□□□□ 0.39
TMEM260-203ENST00000539559 WSB1Q9Y6I7 421 aa17.48■□□□□ 0.39
TMEM260-203ENST00000539559 U3KQA8 63 aa17.48■□□□□ 0.39
TMEM260-203ENST00000539559 COL6A3P12111 3177 aa17.48■□□□□ 0.39
TMEM260-203ENST00000539559 IGKV1D-13A0A0B4J2D9 117 aa17.47■□□□□ 0.39
TMEM260-203ENST00000539559 PDCD6O75340 191 aa17.47■□□□□ 0.39
TMEM260-203ENST00000539559 SCAF4O95104 1147 aaKnown RBP17.47■□□□□ 0.39
TMEM260-203ENST00000539559 SCTP09683 121 aa17.47■□□□□ 0.39
TMEM260-203ENST00000539559 IGKV1-13P0DP09 117 aa17.47■□□□□ 0.39
TMEM260-203ENST00000539559 CCL7P80098 99 aa17.47■□□□□ 0.39
TMEM260-203ENST00000539559 FAM27BQ5VT28 67 aa17.47■□□□□ 0.39
TMEM260-203ENST00000539559 FOXL2NBQ6ZUU3 175 aa17.47■□□□□ 0.39
TMEM260-203ENST00000539559 ZNF610Q8N9Z0 462 aa17.47■□□□□ 0.39
TMEM260-203ENST00000539559 IL36RNQ9UBH0 155 aa17.47■□□□□ 0.39
TMEM260-203ENST00000539559 RARRES3Q9UL19 164 aa17.47■□□□□ 0.39
TMEM260-203ENST00000539559 PI4KAP42356 2102 aa17.47■□□□□ 0.39
TMEM260-203ENST00000539559 A0A1W2PQM1 296 aa17.47■□□□□ 0.39
TMEM260-203ENST00000539559 YKT6O15498 198 aa17.47■□□□□ 0.39
TMEM260-203ENST00000539559 HIST1H2BKO60814 126 aa17.47■□□□□ 0.39
TMEM260-203ENST00000539559 PITX3O75364 302 aa17.47■□□□□ 0.39
TMEM260-203ENST00000539559 HIST1H2BJP06899 126 aa17.47■□□□□ 0.39
TMEM260-203ENST00000539559 SOD3P08294 240 aa17.47■□□□□ 0.39
TMEM260-203ENST00000539559 MDKP21741 143 aaPredicted RBP17.47■□□□□ 0.39
TMEM260-203ENST00000539559 HIST1H2BOP23527 126 aa17.47■□□□□ 0.39
TMEM260-203ENST00000539559 S100A2P29034 98 aa17.47■□□□□ 0.39
TMEM260-203ENST00000539559 HIST1H2BBP33778 126 aa17.47■□□□□ 0.39
TMEM260-203ENST00000539559 PLA2G5P39877 138 aa17.47■□□□□ 0.39
TMEM260-203ENST00000539559 HIST1H2BDP58876 126 aa17.47■□□□□ 0.39
TMEM260-203ENST00000539559 HIST1H2BCP62807 126 aa17.47■□□□□ 0.39
TMEM260-203ENST00000539559 HIST2H2BEQ16778 126 aa17.47■□□□□ 0.39
TMEM260-203ENST00000539559 HIST2H2BFQ5QNW6 126 aaPredicted RBP17.47■□□□□ 0.39
TMEM260-203ENST00000539559 GAPTQ8N292 157 aa17.47■□□□□ 0.39
TMEM260-203ENST00000539559 HIST1H2BHQ93079 126 aa17.47■□□□□ 0.39
TMEM260-203ENST00000539559 C10orf35Q96D05 121 aa17.47■□□□□ 0.39
TMEM260-203ENST00000539559 HIST1H2BNQ99877 126 aa17.47■□□□□ 0.39
TMEM260-203ENST00000539559 HIST1H2BMQ99879 126 aa17.47■□□□□ 0.39
TMEM260-203ENST00000539559 PLEKHF2Q9H8W4 249 aa17.47■□□□□ 0.39
TMEM260-203ENST00000539559 DKKL1Q9UK85 242 aa17.47■□□□□ 0.39
TMEM260-203ENST00000539559 SLC34A2O95436 690 aa17.46■□□□□ 0.39
TMEM260-203ENST00000539559 NR2C1P13056 603 aa17.46■□□□□ 0.39
TMEM260-203ENST00000539559 LHFPL2Q6ZUX7 228 aa17.46■□□□□ 0.39
TMEM260-203ENST00000539559 SELENOHQ8IZQ5 122 aaKnown RBP17.46■□□□□ 0.39
TMEM260-203ENST00000539559 GAR1Q9NY12 217 aaKnown RBP17.46■□□□□ 0.39
TMEM260-203ENST00000539559 DMRT1Q9Y5R6 373 aa17.46■□□□□ 0.39
TMEM260-203ENST00000539559 IGHV3-9P01782 118 aa17.46■□□□□ 0.39
TMEM260-203ENST00000539559 RAB35Q15286 201 aa17.46■□□□□ 0.39
TMEM260-203ENST00000539559 DPPA2Q7Z7J5 298 aa17.46■□□□□ 0.39
TMEM260-203ENST00000539559 ZNF100Q8IYN0 542 aa17.46■□□□□ 0.39
TMEM260-203ENST00000539559 CALHM2Q9HA72 323 aa17.46■□□□□ 0.39
TMEM260-203ENST00000539559 PROK2Q9HC23 129 aa17.46■□□□□ 0.39
TMEM260-203ENST00000539559 LYRM2Q9NU23 88 aaPredicted RBP17.46■□□□□ 0.39
TMEM260-203ENST00000539559 A0A1B0GW64 132 aa17.45■□□□□ 0.38
TMEM260-203ENST00000539559 TP53I11O14683 189 aa17.45■□□□□ 0.38
TMEM260-203ENST00000539559 CHST1O43916 411 aa17.45■□□□□ 0.38
TMEM260-203ENST00000539559 RBM11P57052 281 aaKnown RBP17.45■□□□□ 0.38
TMEM260-203ENST00000539559 RPL23AP62750 156 aaKnown RBP17.45■□□□□ 0.38
TMEM260-203ENST00000539559 ZNF385CQ66K41 422 aaPredicted RBP17.45■□□□□ 0.38
TMEM260-203ENST00000539559 FAM180AQ6UWF9 173 aa17.45■□□□□ 0.38
TMEM260-203ENST00000539559 C1orf210Q8IVY1 113 aa17.45■□□□□ 0.38
TMEM260-203ENST00000539559 KIAA1456Q9P272 454 aa17.45■□□□□ 0.38
TMEM260-203ENST00000539559 MRPS34P82930 218 aaKnown RBP17.45■□□□□ 0.38
TMEM260-203ENST00000539559 PSG4Q00888 419 aa17.45■□□□□ 0.38
TMEM260-203ENST00000539559 ZNF611Q8N823 705 aa17.45■□□□□ 0.38
TMEM260-203ENST00000539559 CPNE4Q96A23 557 aaPredicted RBP17.45■□□□□ 0.38
TMEM260-203ENST00000539559 OCIAD1Q9NX40 245 aa17.45■□□□□ 0.38
TMEM260-203ENST00000539559 UCP3P55916 312 aa17.44■□□□□ 0.38
TMEM260-203ENST00000539559 TLE1Q04724 770 aa17.44■□□□□ 0.38
TMEM260-203ENST00000539559 AKR1C8PQ5T2L2 129 aa17.44■□□□□ 0.38
TMEM260-203ENST00000539559 SLC23A3Q6PIS1 610 aa17.44■□□□□ 0.38
TMEM260-203ENST00000539559 YRDCQ86U90 279 aaKnown RBP17.44■□□□□ 0.38
TMEM260-203ENST00000539559 CCL28Q9NRJ3 127 aa17.44■□□□□ 0.38
TMEM260-203ENST00000539559 CRIM1Q9NZV1 1036 aa17.44■□□□□ 0.38
TMEM260-203ENST00000539559 GNG13Q9P2W3 67 aa17.44■□□□□ 0.38
TMEM260-203ENST00000539559 IGHV5-10-1A0A0J9YXX1 117 aa17.44■□□□□ 0.38
TMEM260-203ENST00000539559 ZNF729A6NN14 1252 aaPredicted RBP17.44■□□□□ 0.38
TMEM260-203ENST00000539559 CDS2O95674 445 aa17.44■□□□□ 0.38
TMEM260-203ENST00000539559 HLA-HP01893 362 aa17.44■□□□□ 0.38
TMEM260-203ENST00000539559 LIFP15018 202 aa17.44■□□□□ 0.38
TMEM260-203ENST00000539559 GPX4P36969 197 aaPredicted RBP17.44■□□□□ 0.38
TMEM260-203ENST00000539559 HAAOP46952 286 aa17.44■□□□□ 0.38
TMEM260-203ENST00000539559 RPS18P62269 152 aaKnown RBP17.44■□□□□ 0.38
TMEM260-203ENST00000539559 CMTM1Q8IZ96 169 aa17.44■□□□□ 0.38
TMEM260-203ENST00000539559 NIPSNAP3BQ9BS92 247 aa17.44■□□□□ 0.38
TMEM260-203ENST00000539559 TNRC6BQ9UPQ9 1833 aaKnown RBP17.44■□□□□ 0.38
TMEM260-203ENST00000539559 FUT3P21217 361 aa17.44■□□□□ 0.38
TMEM260-203ENST00000539559 ASCL4Q6XD76 172 aa17.44■□□□□ 0.38
TMEM260-203ENST00000539559 CLDND2Q8NHS1 167 aa17.44■□□□□ 0.38
TMEM260-203ENST00000539559 EXTL1Q92935 676 aa17.44■□□□□ 0.38
TMEM260-203ENST00000539559 CXorf65A6NEN9 183 aa17.43■□□□□ 0.38
TMEM260-203ENST00000539559 HSPA12AO43301 675 aa17.43■□□□□ 0.38
TMEM260-203ENST00000539559 TMEM267Q0VDI3 215 aaPredicted RBP17.43■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms