RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 ZNF581Q9P0T4 197 aa11.96□□□□□ -0.49
USP28-204ENST00000537642 ERGIC3Q9Y282 383 aa11.96□□□□□ -0.49
USP28-204ENST00000537642 MGAM2Q2M2H8 2515 aa11.95□□□□□ -0.5
USP28-204ENST00000537642 PTGES3LE9PB15 166 aa11.95□□□□□ -0.5
USP28-204ENST00000537642 PIN1P1O15428 100 aa11.95□□□□□ -0.5
USP28-204ENST00000537642 CDK2P24941 298 aa11.95□□□□□ -0.5
USP28-204ENST00000537642 RAB13P51153 203 aa11.95□□□□□ -0.5
USP28-204ENST00000537642 FAM189A2Q15884 450 aa11.95□□□□□ -0.5
USP28-204ENST00000537642 C17orf58Q2M2W7 97 aa11.95□□□□□ -0.5
USP28-204ENST00000537642 NHLRC3Q5JS37 347 aa11.95□□□□□ -0.5
USP28-204ENST00000537642 SLC35E4Q6ICL7 350 aa11.95□□□□□ -0.5
USP28-204ENST00000537642 HEPN1Q6WQI6 88 aa11.95□□□□□ -0.5
USP28-204ENST00000537642 DERL3Q96Q80 235 aa11.95□□□□□ -0.5
USP28-204ENST00000537642 CITED1Q99966 193 aa11.95□□□□□ -0.5
USP28-204ENST00000537642 PAK1IP1Q9NWT1 392 aaPredicted RBP11.95□□□□□ -0.5
USP28-204ENST00000537642 CKLFQ9UBR5 152 aa11.95□□□□□ -0.5
USP28-204ENST00000537642 ST3GAL6Q9Y274 331 aa11.95□□□□□ -0.5
USP28-204ENST00000537642 A0A1W2PP11 408 aa11.94□□□□□ -0.5
USP28-204ENST00000537642 CHST1O43916 411 aa11.94□□□□□ -0.5
USP28-204ENST00000537642 JUNBP17275 347 aaPredicted RBP11.94□□□□□ -0.5
USP28-204ENST00000537642 SERPINA2P20848 420 aa11.94□□□□□ -0.5
USP28-204ENST00000537642 RBM11P57052 281 aaKnown RBP11.94□□□□□ -0.5
USP28-204ENST00000537642 BDH1Q02338 343 aa11.94□□□□□ -0.5
USP28-204ENST00000537642 MINOS1Q5TGZ0 78 aa11.94□□□□□ -0.5
USP28-204ENST00000537642 OR52W1Q6IF63 320 aa11.94□□□□□ -0.5
USP28-204ENST00000537642 BRICD5Q6PL45 260 aa11.94□□□□□ -0.5
USP28-204ENST00000537642 ABHD12Q8N2K0 398 aa11.94□□□□□ -0.5
USP28-204ENST00000537642 OSR2Q8N2R0 312 aa11.94□□□□□ -0.5
USP28-204ENST00000537642 OR4P4Q8NGL7 312 aa11.94□□□□□ -0.5
USP28-204ENST00000537642 PLPPR1Q8TBJ4 325 aa11.94□□□□□ -0.5
USP28-204ENST00000537642 OR5M11Q96RB7 305 aa11.94□□□□□ -0.5
USP28-204ENST00000537642 MND1Q9BWT6 205 aa11.94□□□□□ -0.5
USP28-204ENST00000537642 CDCA4Q9BXL8 241 aa11.94□□□□□ -0.5
USP28-204ENST00000537642 OR6C3Q9NZP0 311 aa11.94□□□□□ -0.5
USP28-204ENST00000537642 KIF25Q9UIL4 384 aa11.94□□□□□ -0.5
USP28-204ENST00000537642 FOXJ3Q9UPW0 622 aa11.94□□□□□ -0.5
USP28-204ENST00000537642 LSM2Q9Y333 95 aaKnown RBP11.94□□□□□ -0.5
USP28-204ENST00000537642 HILPDAQ9Y5L2 63 aa11.94□□□□□ -0.5
USP28-204ENST00000537642 MINOS1-NBL1R4GNA1 71 aa11.94□□□□□ -0.5
USP28-204ENST00000537642 FAM172BPA6NC97 362 aa11.93□□□□□ -0.5
USP28-204ENST00000537642 ZNF729A6NN14 1252 aaPredicted RBP11.93□□□□□ -0.5
USP28-204ENST00000537642 GEMIN2O14893 280 aaKnown RBP11.93□□□□□ -0.5
USP28-204ENST00000537642 CSTBP04080 98 aaKnown RBP11.93□□□□□ -0.5
USP28-204ENST00000537642 CGB3P0DN86 165 aa11.93□□□□□ -0.5
USP28-204ENST00000537642 CGB7P0DN87 165 aa11.93□□□□□ -0.5
USP28-204ENST00000537642 MYF6P23409 242 aa11.93□□□□□ -0.5
USP28-204ENST00000537642 CD34P28906 385 aa11.93□□□□□ -0.5
USP28-204ENST00000537642 SLC35A2P78381 396 aa11.93□□□□□ -0.5
USP28-204ENST00000537642 PAX5Q02548 391 aa11.93□□□□□ -0.5
USP28-204ENST00000537642 IRF3Q14653 427 aa11.93□□□□□ -0.5
USP28-204ENST00000537642 SLC22A6Q4U2R8 563 aa11.93□□□□□ -0.5
USP28-204ENST00000537642 UTF1Q5T230 341 aa11.93□□□□□ -0.5
USP28-204ENST00000537642 RSBN1Q5VWQ0 802 aaPredicted RBP11.93□□□□□ -0.5
USP28-204ENST00000537642 CCBE1Q6UXH8 406 aaPredicted RBP11.93□□□□□ -0.5
USP28-204ENST00000537642 LIAT1Q6ZQX7 453 aa11.93□□□□□ -0.5
USP28-204ENST00000537642 RTN4RL2Q86UN3 420 aa11.93□□□□□ -0.5
USP28-204ENST00000537642 SUMF2Q8NBJ7 301 aa11.93□□□□□ -0.5
USP28-204ENST00000537642 OR13A1Q8NGR1 328 aa11.93□□□□□ -0.5
USP28-204ENST00000537642 NDNFQ8TB73 568 aa11.93□□□□□ -0.5
USP28-204ENST00000537642 MYDGFQ969H8 173 aa11.93□□□□□ -0.5
USP28-204ENST00000537642 MUL1Q969V5 352 aa11.93□□□□□ -0.5
USP28-204ENST00000537642 S100A13Q99584 98 aa11.93□□□□□ -0.5
USP28-204ENST00000537642 DPCDQ9BVM2 203 aaPredicted RBP11.93□□□□□ -0.5
USP28-204ENST00000537642 NCOR1P1Q9H4R4 102 aa11.93□□□□□ -0.5
USP28-204ENST00000537642 IFT22Q9H7X7 185 aa11.93□□□□□ -0.5
USP28-204ENST00000537642 ZNF286AQ9HBT8 521 aa11.93□□□□□ -0.5
USP28-204ENST00000537642 RAB18Q9NP72 206 aa11.93□□□□□ -0.5
USP28-204ENST00000537642 ABCB10Q9NRK6 738 aa11.93□□□□□ -0.5
USP28-204ENST00000537642 SCN3BQ9NY72 215 aa11.93□□□□□ -0.5
USP28-204ENST00000537642 FBLN5Q9UBX5 448 aa11.93□□□□□ -0.5
USP28-204ENST00000537642 TCF19Q9Y242 345 aa11.93□□□□□ -0.5
USP28-204ENST00000537642 WNK1Q9H4A3 2382 aa11.93□□□□□ -0.5
USP28-204ENST00000537642 PKD1L1Q8TDX9 2849 aa11.93□□□□□ -0.5
USP28-204ENST00000537642 MEIKINA0A087WXM9 373 aa11.92□□□□□ -0.5
USP28-204ENST00000537642 KBTBD11-OT1A0A1B0GTJ5 212 aa11.92□□□□□ -0.5
USP28-204ENST00000537642 A6NDX4 124 aa11.92□□□□□ -0.5
USP28-204ENST00000537642 ZNF780AO75290 641 aaPredicted RBP11.92□□□□□ -0.5
USP28-204ENST00000537642 OR7C1O76099 320 aaPredicted RBP11.92□□□□□ -0.5
USP28-204ENST00000537642 IGLV1-47P01700 117 aa11.92□□□□□ -0.5
USP28-204ENST00000537642 MAS1P04201 325 aa11.92□□□□□ -0.5
USP28-204ENST00000537642 HTR1DP28221 377 aa11.92□□□□□ -0.5
USP28-204ENST00000537642 GABRA5P31644 462 aa11.92□□□□□ -0.5
USP28-204ENST00000537642 GLP1RP43220 463 aa11.92□□□□□ -0.5
USP28-204ENST00000537642 KIR2DS4P43632 304 aa11.92□□□□□ -0.5
USP28-204ENST00000537642 KCNJ3P48549 501 aa11.92□□□□□ -0.5
USP28-204ENST00000537642 DYNLT3P51808 116 aa11.92□□□□□ -0.5
USP28-204ENST00000537642 INSL4Q14641 139 aa11.92□□□□□ -0.5
USP28-204ENST00000537642 SPHARQ15513 63 aa11.92□□□□□ -0.5
USP28-204ENST00000537642 LYPD6Q86Y78 171 aa11.92□□□□□ -0.5
USP28-204ENST00000537642 JAGN1Q8N5M9 183 aa11.92□□□□□ -0.5
USP28-204ENST00000537642 OR4D6Q8NGJ1 314 aa11.92□□□□□ -0.5
USP28-204ENST00000537642 ANKRD60Q9BZ19 345 aa11.92□□□□□ -0.5
USP28-204ENST00000537642 BARHL1Q9BZE3 327 aa11.92□□□□□ -0.5
USP28-204ENST00000537642 RANBP3Q9H6Z4 567 aaPredicted RBP11.92□□□□□ -0.5
USP28-204ENST00000537642 MRPS28Q9Y2Q9 187 aaKnown RBP11.92□□□□□ -0.5
USP28-204ENST00000537642 SIGLEC9Q9Y336 463 aa11.92□□□□□ -0.5
USP28-204ENST00000537642 A0A087X0M5 115 aa11.91□□□□□ -0.5
USP28-204ENST00000537642 A0A1B0GX30 115 aa11.91□□□□□ -0.5
USP28-204ENST00000537642 H0YHG0 523 aa11.91□□□□□ -0.5
USP28-204ENST00000537642 GTF2F2P13984 249 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms