RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 RAP2BP61225 183 aa10.11□□□□□ -0.79
CLIP1-208ENST00000537004 TAGLNQ01995 201 aaKnown RBP10.11□□□□□ -0.79
CLIP1-208ENST00000537004 C2orf68Q2NKX9 166 aa10.11□□□□□ -0.79
CLIP1-208ENST00000537004 PRSS57Q6UWY2 283 aa10.11□□□□□ -0.79
CLIP1-208ENST00000537004 SLC25A42Q86VD7 318 aa10.11□□□□□ -0.79
CLIP1-208ENST00000537004 TERB2Q8NHR7 220 aa10.11□□□□□ -0.79
CLIP1-208ENST00000537004 MAFIPQ8WZ33 124 aa10.11□□□□□ -0.79
CLIP1-208ENST00000537004 C18orf12Q96KH6 178 aa10.11□□□□□ -0.79
CLIP1-208ENST00000537004 FAAP24Q9BTP7 215 aa10.11□□□□□ -0.79
CLIP1-208ENST00000537004 ST3GAL6Q9Y274 331 aa10.11□□□□□ -0.79
CLIP1-208ENST00000537004 SONP18583 2426 aaKnown RBP10.11□□□□□ -0.79
CLIP1-208ENST00000537004 GOSR2O14653 212 aa10.11□□□□□ -0.79
CLIP1-208ENST00000537004 LY6HO94772 140 aa10.11□□□□□ -0.79
CLIP1-208ENST00000537004 HLA-AP01891 365 aaKnown RBP10.11□□□□□ -0.79
CLIP1-208ENST00000537004 HOXB1P14653 301 aaPredicted RBP10.11□□□□□ -0.79
CLIP1-208ENST00000537004 CHATP28329 748 aa10.11□□□□□ -0.79
CLIP1-208ENST00000537004 HAAOP46952 286 aa10.11□□□□□ -0.79
CLIP1-208ENST00000537004 RBM11P57052 281 aaKnown RBP10.11□□□□□ -0.79
CLIP1-208ENST00000537004 H2BFSP57053 126 aa10.11□□□□□ -0.79
CLIP1-208ENST00000537004 TSPAN5P62079 268 aa10.11□□□□□ -0.79
CLIP1-208ENST00000537004 DHRS2Q13268 280 aa10.11□□□□□ -0.79
CLIP1-208ENST00000537004 MST1LQ2TV78 715 aa10.11□□□□□ -0.79
CLIP1-208ENST00000537004 SPATA46Q5T0L3 261 aa10.11□□□□□ -0.79
CLIP1-208ENST00000537004 OR10AD1Q8NGE0 317 aa10.11□□□□□ -0.79
CLIP1-208ENST00000537004 HDHD3Q9BSH5 251 aaPredicted RBP10.11□□□□□ -0.79
CLIP1-208ENST00000537004 FN3KRPQ9HA64 309 aa10.11□□□□□ -0.79
CLIP1-208ENST00000537004 CDH20Q9HBT6 801 aa10.11□□□□□ -0.79
CLIP1-208ENST00000537004 CBLN4Q9NTU7 201 aa10.11□□□□□ -0.79
CLIP1-208ENST00000537004 IGHV2OR16-5A0A0B4J2B6 119 aa10.1□□□□□ -0.79
CLIP1-208ENST00000537004 ANKRD30BLA7E2S9 258 aa10.1□□□□□ -0.79
CLIP1-208ENST00000537004 ZNF732B4DXR9 585 aa10.1□□□□□ -0.79
CLIP1-208ENST00000537004 LILRA1O75019 489 aa10.1□□□□□ -0.79
CLIP1-208ENST00000537004 APOBEC3AP31941 199 aaPredicted RBP10.1□□□□□ -0.79
CLIP1-208ENST00000537004 NPBWR2P48146 333 aa10.1□□□□□ -0.79
CLIP1-208ENST00000537004 CLEC12BQ2HXU8 276 aa10.1□□□□□ -0.79
CLIP1-208ENST00000537004 CHRFAM7AQ494W8 412 aa10.1□□□□□ -0.79
CLIP1-208ENST00000537004 C12orf45Q8N5I9 185 aaPredicted RBP10.1□□□□□ -0.79
CLIP1-208ENST00000537004 OR5AP2Q8NGF4 316 aa10.1□□□□□ -0.79
CLIP1-208ENST00000537004 OR5A2Q8NGI9 324 aa10.1□□□□□ -0.79
CLIP1-208ENST00000537004 MARCH1Q8TCQ1 289 aa10.1□□□□□ -0.79
CLIP1-208ENST00000537004 HIST1H2AAQ96QV6 131 aa10.1□□□□□ -0.79
CLIP1-208ENST00000537004 SULT4A1Q9BR01 284 aa10.1□□□□□ -0.79
CLIP1-208ENST00000537004 AK3Q9UIJ7 227 aa10.1□□□□□ -0.79
CLIP1-208ENST00000537004 JMJD1CQ15652 2540 aa10.1□□□□□ -0.79
CLIP1-208ENST00000537004 FN1P02751 2386 aaKnown RBP10.1□□□□□ -0.79
CLIP1-208ENST00000537004 LEUTXA8MZ59 168 aa10.09□□□□□ -0.79
CLIP1-208ENST00000537004 J3QW42 95 aa10.09□□□□□ -0.79
CLIP1-208ENST00000537004 SLC22A5O76082 557 aa10.09□□□□□ -0.79
CLIP1-208ENST00000537004 SIX6O95475 246 aa10.09□□□□□ -0.79
CLIP1-208ENST00000537004 ZBTB25P24278 435 aa10.09□□□□□ -0.79
CLIP1-208ENST00000537004 PPP1R1AQ13522 171 aa10.09□□□□□ -0.79
CLIP1-208ENST00000537004 ADIPOQQ15848 244 aa10.09□□□□□ -0.79
CLIP1-208ENST00000537004 OR2T2Q6IF00 324 aa10.09□□□□□ -0.79
CLIP1-208ENST00000537004 FAHD2BQ6P2I3 314 aaPredicted RBP10.09□□□□□ -0.79
CLIP1-208ENST00000537004 C11orf88Q6PI97 169 aa10.09□□□□□ -0.79
CLIP1-208ENST00000537004 TMEM17Q86X19 198 aa10.09□□□□□ -0.79
CLIP1-208ENST00000537004 SAXO1Q8IYX7 474 aa10.09□□□□□ -0.79
CLIP1-208ENST00000537004 BATF2Q8N1L9 274 aa10.09□□□□□ -0.79
CLIP1-208ENST00000537004 FAM169BQ8N8A8 192 aa10.09□□□□□ -0.79
CLIP1-208ENST00000537004 Q8NFD4 153 aa10.09□□□□□ -0.79
CLIP1-208ENST00000537004 OR5P3Q8WZ94 311 aa10.09□□□□□ -0.79
CLIP1-208ENST00000537004 SLAMF9Q96A28 289 aa10.09□□□□□ -0.79
CLIP1-208ENST00000537004 WDR89Q96FK6 387 aaPredicted RBP10.09□□□□□ -0.79
CLIP1-208ENST00000537004 FAHD2AQ96GK7 314 aa10.09□□□□□ -0.79
CLIP1-208ENST00000537004 EHFQ9NZC4 300 aa10.09□□□□□ -0.79
CLIP1-208ENST00000537004 MPC1Q9Y5U8 109 aa10.09□□□□□ -0.79
CLIP1-208ENST00000537004 IGKV1D-8A0A087WSZ0 117 aa10.09□□□□□ -0.79
CLIP1-208ENST00000537004 CEACAM18A8MTB9 384 aa10.09□□□□□ -0.79
CLIP1-208ENST00000537004 SDCBPO00560 298 aaPredicted RBP10.09□□□□□ -0.79
CLIP1-208ENST00000537004 OR4A8P0C604 315 aa10.09□□□□□ -0.79
CLIP1-208ENST00000537004 ZNF35P13682 527 aa10.09□□□□□ -0.79
CLIP1-208ENST00000537004 CTRB1P17538 263 aa10.09□□□□□ -0.79
CLIP1-208ENST00000537004 BCL3P20749 454 aa10.09□□□□□ -0.79
CLIP1-208ENST00000537004 NPY4RP50391 375 aa10.09□□□□□ -0.79
CLIP1-208ENST00000537004 MPPED2Q15777 294 aa10.09□□□□□ -0.79
CLIP1-208ENST00000537004 MSMPQ1L6U9 139 aa10.09□□□□□ -0.79
CLIP1-208ENST00000537004 DCAF12L2Q5VW00 463 aa10.09□□□□□ -0.79
CLIP1-208ENST00000537004 CTRB2Q6GPI1 263 aa10.09□□□□□ -0.79
CLIP1-208ENST00000537004 BRICD5Q6PL45 260 aa10.09□□□□□ -0.79
CLIP1-208ENST00000537004 FBXW12Q6X9E4 464 aa10.09□□□□□ -0.79
CLIP1-208ENST00000537004 LYG2Q86SG7 212 aa10.09□□□□□ -0.79
CLIP1-208ENST00000537004 ADAD2Q8NCV1 583 aaKnown RBP10.09□□□□□ -0.79
CLIP1-208ENST00000537004 OR13G1Q8NGZ3 307 aa10.09□□□□□ -0.79
CLIP1-208ENST00000537004 CMSS1Q9BQ75 279 aaKnown RBP10.09□□□□□ -0.79
CLIP1-208ENST00000537004 PPA2Q9H2U2 334 aa10.09□□□□□ -0.79
CLIP1-208ENST00000537004 OPN4Q9UHM6 478 aa10.09□□□□□ -0.79
CLIP1-208ENST00000537004 CHD3Q12873 2000 aaKnown RBP10.09□□□□□ -0.79
CLIP1-208ENST00000537004 RNF223E7ERA6 249 aa10.08□□□□□ -0.8
CLIP1-208ENST00000537004 F5H5P2 479 aa10.08□□□□□ -0.8
CLIP1-208ENST00000537004 PDCD6O75340 191 aa10.08□□□□□ -0.8
CLIP1-208ENST00000537004 FOSL1P15407 271 aa10.08□□□□□ -0.8
CLIP1-208ENST00000537004 AKR1C4P17516 323 aa10.08□□□□□ -0.8
CLIP1-208ENST00000537004 CD34P28906 385 aa10.08□□□□□ -0.8
CLIP1-208ENST00000537004 SERPINF1P36955 418 aa10.08□□□□□ -0.8
CLIP1-208ENST00000537004 PPP1CBP62140 327 aa10.08□□□□□ -0.8
CLIP1-208ENST00000537004 IKZF1Q13422 519 aa10.08□□□□□ -0.8
CLIP1-208ENST00000537004 PDCD1Q15116 288 aa10.08□□□□□ -0.8
CLIP1-208ENST00000537004 SWI5Q1ZZU3 235 aa10.08□□□□□ -0.8
CLIP1-208ENST00000537004 C3orf36Q3SXR2 165 aa10.08□□□□□ -0.8
CLIP1-208ENST00000537004 ELP2Q6IA86 826 aa10.08□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms