RNA–Protein interactions for RNA: ENST00000533242.1

NEDD8-207, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 1 (best)

Gene NEDD8, Length 2,300 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-207ENST00000533242 NPY4RP50391 375 aa6.96□□□□□ -1.3
NEDD8-207ENST00000533242 IL13RA1P78552 427 aa6.96□□□□□ -1.3
NEDD8-207ENST00000533242 NAAAQ02083 359 aa6.96□□□□□ -1.3
NEDD8-207ENST00000533242 MEF2DQ14814 521 aa6.96□□□□□ -1.3
NEDD8-207ENST00000533242 KISS1Q15726 138 aa6.96□□□□□ -1.3
NEDD8-207ENST00000533242 TUSC1Q2TAM9 212 aa6.96□□□□□ -1.3
NEDD8-207ENST00000533242 HIKESHIQ53FT3 197 aa6.96□□□□□ -1.3
NEDD8-207ENST00000533242 C10orf128Q5T292 105 aa6.96□□□□□ -1.3
NEDD8-207ENST00000533242 KCTD9Q7L273 389 aa6.96□□□□□ -1.3
NEDD8-207ENST00000533242 DOK3Q7L591 496 aa6.96□□□□□ -1.3
NEDD8-207ENST00000533242 HOGA1Q86XE5 327 aa6.96□□□□□ -1.3
NEDD8-207ENST00000533242 STPG2Q8N412 459 aa6.96□□□□□ -1.3
NEDD8-207ENST00000533242 NUP37Q8NFH4 326 aa6.96□□□□□ -1.3
NEDD8-207ENST00000533242 OR4K15Q8NH41 348 aa6.96□□□□□ -1.3
NEDD8-207ENST00000533242 SUN5Q8TC36 379 aa6.96□□□□□ -1.3
NEDD8-207ENST00000533242 SCARB1Q8WTV0 552 aa6.96□□□□□ -1.3
NEDD8-207ENST00000533242 PGAM5Q96HS1 289 aa6.96□□□□□ -1.3
NEDD8-207ENST00000533242 NELFAQ9H3P2 528 aa6.96□□□□□ -1.3
NEDD8-207ENST00000533242 C5orf66Q9H5L9 145 aa6.96□□□□□ -1.3
NEDD8-207ENST00000533242 ZNF442Q9H7R0 627 aa6.96□□□□□ -1.3
NEDD8-207ENST00000533242 GPR160Q9UJ42 338 aa6.96□□□□□ -1.3
NEDD8-207ENST00000533242 ANAPC10Q9UM13 185 aa6.96□□□□□ -1.3
NEDD8-207ENST00000533242 VSTM5A8MXK1 200 aa6.95□□□□□ -1.3
NEDD8-207ENST00000533242 FAM25EA8MYX2 175 aa6.95□□□□□ -1.3
NEDD8-207ENST00000533242 B4DSR2 109 aa6.95□□□□□ -1.3
NEDD8-207ENST00000533242 SDCBPO00560 298 aaPredicted RBP6.95□□□□□ -1.3
NEDD8-207ENST00000533242 DHHO43323 396 aa6.95□□□□□ -1.3
NEDD8-207ENST00000533242 CALCRP30988 508 aa6.95□□□□□ -1.3
NEDD8-207ENST00000533242 SRSF4Q08170 494 aaKnown RBP6.95□□□□□ -1.3
NEDD8-207ENST00000533242 C11orf87Q6NUJ2 197 aa6.95□□□□□ -1.3
NEDD8-207ENST00000533242 FOXL2NBQ6ZUU3 175 aa6.95□□□□□ -1.3
NEDD8-207ENST00000533242 OR1K1Q8NGR3 316 aa6.95□□□□□ -1.3
NEDD8-207ENST00000533242 GPER1Q99527 375 aa6.95□□□□□ -1.3
NEDD8-207ENST00000533242 TNFSF18Q9UNG2 199 aa6.95□□□□□ -1.3
NEDD8-207ENST00000533242 DBX1A6NMT0 343 aa6.95□□□□□ -1.3
NEDD8-207ENST00000533242 ADAP1O75689 374 aa6.95□□□□□ -1.3
NEDD8-207ENST00000533242 HTR3BO95264 441 aa6.95□□□□□ -1.3
NEDD8-207ENST00000533242 IGLV1-44P01699 117 aa6.95□□□□□ -1.3
NEDD8-207ENST00000533242 CECR9P0C854 216 aa6.95□□□□□ -1.3
NEDD8-207ENST00000533242 SERPINA2P20848 420 aa6.95□□□□□ -1.3
NEDD8-207ENST00000533242 PTGFRP43088 359 aa6.95□□□□□ -1.3
NEDD8-207ENST00000533242 ZNF133P52736 654 aaPredicted RBP6.95□□□□□ -1.3
NEDD8-207ENST00000533242 UBE2NP61088 152 aaKnown RBP6.95□□□□□ -1.3
NEDD8-207ENST00000533242 LSM6P62312 80 aaKnown RBP6.95□□□□□ -1.3
NEDD8-207ENST00000533242 GRB2P62993 217 aaKnown RBP6.95□□□□□ -1.3
NEDD8-207ENST00000533242 SUPT4H1P63272 117 aaKnown RBP6.95□□□□□ -1.3
NEDD8-207ENST00000533242 HIST1H3AP68431 136 aa6.95□□□□□ -1.3
NEDD8-207ENST00000533242 PRR31Q5SQ13 230 aa6.95□□□□□ -1.3
NEDD8-207ENST00000533242 CLVS2Q5SYC1 327 aa6.95□□□□□ -1.3
NEDD8-207ENST00000533242 HIST2H3PS2Q5TEC6 136 aa6.95□□□□□ -1.3
NEDD8-207ENST00000533242 AADACL3Q5VUY0 350 aa6.95□□□□□ -1.3
NEDD8-207ENST00000533242 VHLLQ6RSH7 139 aa6.95□□□□□ -1.3
NEDD8-207ENST00000533242 HIST2H3AQ71DI3 136 aa6.95□□□□□ -1.3
NEDD8-207ENST00000533242 PGAP1Q75T13 922 aa6.95□□□□□ -1.3
NEDD8-207ENST00000533242 AAED1Q7RTV5 226 aa6.95□□□□□ -1.3
NEDD8-207ENST00000533242 OR2W3Q7Z3T1 314 aa6.95□□□□□ -1.3
NEDD8-207ENST00000533242 FAM169BQ8N8A8 192 aa6.95□□□□□ -1.3
NEDD8-207ENST00000533242 ZDHHC22Q8N966 263 aa6.95□□□□□ -1.3
NEDD8-207ENST00000533242 KCNG3Q8TAE7 436 aa6.95□□□□□ -1.3
NEDD8-207ENST00000533242 FGFBP3Q8TAT2 258 aa6.95□□□□□ -1.3
NEDD8-207ENST00000533242 C17orf50Q8WW18 174 aa6.95□□□□□ -1.3
NEDD8-207ENST00000533242 ST8SIA2Q92186 375 aa6.95□□□□□ -1.3
NEDD8-207ENST00000533242 BCL2L2Q92843 193 aaPredicted RBP6.95□□□□□ -1.3
NEDD8-207ENST00000533242 ALKBH3Q96Q83 286 aaPredicted RBP6.95□□□□□ -1.3
NEDD8-207ENST00000533242 JMJD8Q96S16 334 aa6.95□□□□□ -1.3
NEDD8-207ENST00000533242 HDHD3Q9BSH5 251 aaPredicted RBP6.95□□□□□ -1.3
NEDD8-207ENST00000533242 PDCD10Q9BUL8 212 aa6.95□□□□□ -1.3
NEDD8-207ENST00000533242 SF3B5Q9BWJ5 86 aaKnown RBP6.95□□□□□ -1.3
NEDD8-207ENST00000533242 SPEF1Q9Y4P9 236 aa6.95□□□□□ -1.3
NEDD8-207ENST00000533242 IGKV1-27A0A075B6S5 117 aa6.94□□□□□ -1.3
NEDD8-207ENST00000533242 M0R135 149 aa6.94□□□□□ -1.3
NEDD8-207ENST00000533242 DHRS3O75911 302 aa6.94□□□□□ -1.3
NEDD8-207ENST00000533242 ZNF205O95201 554 aa6.94□□□□□ -1.3
NEDD8-207ENST00000533242 NAT2P11245 290 aa6.94□□□□□ -1.3
NEDD8-207ENST00000533242 HOXB1P14653 301 aaPredicted RBP6.94□□□□□ -1.3
NEDD8-207ENST00000533242 MGMTP16455 207 aa6.94□□□□□ -1.3
NEDD8-207ENST00000533242 NAT1P18440 290 aa6.94□□□□□ -1.3
NEDD8-207ENST00000533242 THBS4P35443 961 aa6.94□□□□□ -1.3
NEDD8-207ENST00000533242 LUMP51884 338 aaPredicted RBP6.94□□□□□ -1.3
NEDD8-207ENST00000533242 ARPC4P59998 168 aa6.94□□□□□ -1.3
NEDD8-207ENST00000533242 HILS1P60008 231 aa6.94□□□□□ -1.3
NEDD8-207ENST00000533242 GMFBP60983 142 aa6.94□□□□□ -1.3
NEDD8-207ENST00000533242 RPS27AP62979 156 aaKnown RBP6.94□□□□□ -1.3
NEDD8-207ENST00000533242 PEG10Q86TG7 708 aaKnown RBP6.94□□□□□ -1.3
NEDD8-207ENST00000533242 FAM89BQ8N5H3 189 aa6.94□□□□□ -1.3
NEDD8-207ENST00000533242 TEX29Q8N6K0 151 aa6.94□□□□□ -1.3
NEDD8-207ENST00000533242 GJC3Q8NFK1 279 aa6.94□□□□□ -1.3
NEDD8-207ENST00000533242 OR13G1Q8NGZ3 307 aa6.94□□□□□ -1.3
NEDD8-207ENST00000533242 SGK3Q96BR1 496 aa6.94□□□□□ -1.3
NEDD8-207ENST00000533242 ZNF799Q96GE5 643 aa6.94□□□□□ -1.3
NEDD8-207ENST00000533242 NUDT16L1Q9BRJ7 211 aaKnown RBP6.94□□□□□ -1.3
NEDD8-207ENST00000533242 ST6GALNAC5Q9BVH7 336 aa6.94□□□□□ -1.3
NEDD8-207ENST00000533242 ULBP2Q9BZM5 246 aa6.94□□□□□ -1.3
NEDD8-207ENST00000533242 PLEK2Q9NYT0 353 aa6.94□□□□□ -1.3
NEDD8-207ENST00000533242 MBD2Q9UBB5 411 aa6.94□□□□□ -1.3
NEDD8-207ENST00000533242 PCDHB10Q9UN67 800 aa6.94□□□□□ -1.3
NEDD8-207ENST00000533242 PIGLQ9Y2B2 252 aa6.94□□□□□ -1.3
NEDD8-207ENST00000533242 V9GYS6 101 aa6.94□□□□□ -1.3
NEDD8-207ENST00000533242 LOC105371267A0A1B0GV96 52 aa6.94□□□□□ -1.3
NEDD8-207ENST00000533242 A8MXK9 166 aa6.94□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms