RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-233ENST00000531141 FN1P02751 2386 aaKnown RBP1.7□□□□□ -2.14
CD44-233ENST00000531141 GOLGA6L7A0A1B0GV03 622 aa1.7□□□□□ -2.14
CD44-233ENST00000531141 TMEM72A0PK05 275 aa1.7□□□□□ -2.14
CD44-233ENST00000531141 SIVA1O15304 175 aa1.7□□□□□ -2.14
CD44-233ENST00000531141 CCDC22O60826 627 aa1.7□□□□□ -2.14
CD44-233ENST00000531141 KLHL2O95198 593 aa1.7□□□□□ -2.14
CD44-233ENST00000531141 FSTL3O95633 263 aa1.7□□□□□ -2.14
CD44-233ENST00000531141 SNAI1O95863 264 aaPredicted RBP1.7□□□□□ -2.14
CD44-233ENST00000531141 APC2O95996 2303 aa1.7□□□□□ -2.14
CD44-233ENST00000531141 ZNF35P13682 527 aa1.7□□□□□ -2.14
CD44-233ENST00000531141 CSRP1P21291 193 aaKnown RBP1.7□□□□□ -2.14
CD44-233ENST00000531141 HLA-DMAP28067 261 aa1.7□□□□□ -2.14
CD44-233ENST00000531141 CD151P48509 253 aa1.7□□□□□ -2.14
CD44-233ENST00000531141 ETV1P50549 477 aa1.7□□□□□ -2.14
CD44-233ENST00000531141 CLDN6P56747 220 aa1.7□□□□□ -2.14
CD44-233ENST00000531141 KRTAP12-3P60328 96 aa1.7□□□□□ -2.14
CD44-233ENST00000531141 DMTNQ08495 405 aa1.7□□□□□ -2.14
CD44-233ENST00000531141 BIKQ13323 160 aa1.7□□□□□ -2.14
CD44-233ENST00000531141 HHATQ5VTY9 493 aa1.7□□□□□ -2.14
CD44-233ENST00000531141 HCP5Q6MZN7 132 aa1.7□□□□□ -2.14
CD44-233ENST00000531141 IQCF2Q8IXL9 164 aa1.7□□□□□ -2.14
CD44-233ENST00000531141 OR8K3Q8NH51 312 aa1.7□□□□□ -2.14
CD44-233ENST00000531141 GLYATL2Q8WU03 294 aa1.7□□□□□ -2.14
CD44-233ENST00000531141 ZCCHC13Q8WW36 166 aaKnown RBP1.7□□□□□ -2.14
CD44-233ENST00000531141 MRPL48Q96GC5 212 aaKnown RBP1.7□□□□□ -2.14
CD44-233ENST00000531141 TMEM175Q9BSA9 504 aa1.7□□□□□ -2.14
CD44-233ENST00000531141 API5Q9BZZ5 524 aaKnown RBP1.7□□□□□ -2.14
CD44-233ENST00000531141 POMKQ9H5K3 350 aa1.7□□□□□ -2.14
CD44-233ENST00000531141 PRORYQ9H606 182 aa1.7□□□□□ -2.14
CD44-233ENST00000531141 CELSR2Q9HCU4 2923 aa1.7□□□□□ -2.14
CD44-233ENST00000531141 FBXO8Q9NRD0 319 aa1.7□□□□□ -2.14
CD44-233ENST00000531141 ZNF492Q9P255 531 aa1.7□□□□□ -2.14
CD44-233ENST00000531141 CES1P1Q9UKY3 287 aa1.7□□□□□ -2.14
CD44-233ENST00000531141 NDRG2Q9UN36 371 aaKnown RBP1.7□□□□□ -2.14
CD44-233ENST00000531141 SLC22A7Q9Y694 548 aa1.7□□□□□ -2.14
CD44-233ENST00000531141 KIF20BQ96Q89 1820 aa1.7□□□□□ -2.14
CD44-233ENST00000531141 PTPRSQ13332 1948 aa1.7□□□□□ -2.14
CD44-233ENST00000531141 A0A1B0GUL6 1792 aa1.7□□□□□ -2.14
CD44-233ENST00000531141 SIPA1L3O60292 1781 aaPredicted RBP1.7□□□□□ -2.14
CD44-233ENST00000531141 TTC41PQ6P2S7 1318 aa1.69□□□□□ -2.14
CD44-233ENST00000531141 CSMD1Q96PZ7 3565 aa1.69□□□□□ -2.14
CD44-233ENST00000531141 ATRQ13535 2644 aa1.69□□□□□ -2.14
CD44-233ENST00000531141 A0A0B4J2E0 115 aa1.69□□□□□ -2.14
CD44-233ENST00000531141 NCF1BA6NI72 391 aaPredicted RBP1.69□□□□□ -2.14
CD44-233ENST00000531141 SLC22A20A6NK97 555 aa1.69□□□□□ -2.14
CD44-233ENST00000531141 NCF1CA8MVU1 366 aaPredicted RBP1.69□□□□□ -2.14
CD44-233ENST00000531141 SUPT3HB4E1H0 165 aa1.69□□□□□ -2.14
CD44-233ENST00000531141 NDUFS8O00217 210 aa1.69□□□□□ -2.14
CD44-233ENST00000531141 ZBTB5O15062 677 aa1.69□□□□□ -2.14
CD44-233ENST00000531141 POLR3GO15318 223 aaPredicted RBP1.69□□□□□ -2.14
CD44-233ENST00000531141 TTC4O95801 387 aa1.69□□□□□ -2.14
CD44-233ENST00000531141 S100A9P06702 114 aaKnown RBP1.69□□□□□ -2.14
CD44-233ENST00000531141 TPM1P09493 284 aa1.69□□□□□ -2.14
CD44-233ENST00000531141 HRES1P13985 223 aa1.69□□□□□ -2.14
CD44-233ENST00000531141 CD9P21926 228 aa1.69□□□□□ -2.14
CD44-233ENST00000531141 IL3RAP26951 378 aa1.69□□□□□ -2.14
CD44-233ENST00000531141 CCT6AP40227 531 aaKnown RBP1.69□□□□□ -2.14
CD44-233ENST00000531141 ADIGQ0VDE8 80 aa1.69□□□□□ -2.14
CD44-233ENST00000531141 KLHL40Q2TBA0 621 aa1.69□□□□□ -2.14
CD44-233ENST00000531141 DEFB134Q4QY38 66 aa1.69□□□□□ -2.14
CD44-233ENST00000531141 MRPL2Q5T653 305 aaKnown RBP1.69□□□□□ -2.14
CD44-233ENST00000531141 AADACL4Q5VUY2 407 aa1.69□□□□□ -2.14
CD44-233ENST00000531141 LINC00469Q8N7U9 141 aa1.69□□□□□ -2.14
CD44-233ENST00000531141 DRAXINQ8NBI3 349 aaPredicted RBP1.69□□□□□ -2.14
CD44-233ENST00000531141 C19orf60Q96EN9 201 aa1.69□□□□□ -2.14
CD44-233ENST00000531141 UBE2E2Q96LR5 201 aa1.69□□□□□ -2.14
CD44-233ENST00000531141 CSPG4P5Q96PW8 444 aa1.69□□□□□ -2.14
CD44-233ENST00000531141 PKMYT1Q99640 499 aa1.69□□□□□ -2.14
CD44-233ENST00000531141 IQCGQ9H095 443 aaKnown RBP1.69□□□□□ -2.14
CD44-233ENST00000531141 OR51B5Q9H339 312 aa1.69□□□□□ -2.14
CD44-233ENST00000531141 ZNHIT6Q9NWK9 470 aaKnown RBP1.69□□□□□ -2.14
CD44-233ENST00000531141 ZMAT5Q9UDW3 170 aaKnown RBP1.69□□□□□ -2.14
CD44-233ENST00000531141 R4GN34 69 aa1.69□□□□□ -2.14
CD44-233ENST00000531141 SPENQ96T58 3664 aaKnown RBP1.69□□□□□ -2.14
CD44-233ENST00000531141 CRYBG3Q68DQ2 2970 aa1.69□□□□□ -2.14
CD44-233ENST00000531141 PDZD2O15018 2839 aa1.69□□□□□ -2.14
CD44-233ENST00000531141 MTORP42345 2549 aa1.69□□□□□ -2.14
CD44-233ENST00000531141 F8P00451 2351 aa1.69□□□□□ -2.14
CD44-233ENST00000531141 COL11A1P12107 1806 aaPredicted RBP1.68□□□□□ -2.14
CD44-233ENST00000531141 LOC102724200A0A096LPH7 203 aaPredicted RBP1.68□□□□□ -2.14
CD44-233ENST00000531141 IGKV1-6A0A0C4DH72 117 aa1.68□□□□□ -2.14
CD44-233ENST00000531141 LOC100653049A0A140TA62 436 aa1.68□□□□□ -2.14
CD44-233ENST00000531141 SPAARA0A1B0GVQ0 90 aa1.68□□□□□ -2.14
CD44-233ENST00000531141 IZUMO1RA6ND01 250 aa1.68□□□□□ -2.14
CD44-233ENST00000531141 C4orf51C9J302 202 aa1.68□□□□□ -2.14
CD44-233ENST00000531141 D6RAR5 112 aa1.68□□□□□ -2.14
CD44-233ENST00000531141 KRT34O76011 436 aa1.68□□□□□ -2.14
CD44-233ENST00000531141 LCA5LO95447 670 aa1.68□□□□□ -2.14
CD44-233ENST00000531141 NRASP01111 189 aa1.68□□□□□ -2.14
CD44-233ENST00000531141 HRASP01112 189 aa1.68□□□□□ -2.14
CD44-233ENST00000531141 KRASP01116 189 aa1.68□□□□□ -2.14
CD44-233ENST00000531141 IGKV1-39P01597 117 aa1.68□□□□□ -2.14
CD44-233ENST00000531141 IGKV1D-39P04432 117 aa1.68□□□□□ -2.14
CD44-233ENST00000531141 STAG3L3P0CL85 134 aa1.68□□□□□ -2.14
CD44-233ENST00000531141 RALBP11234 206 aa1.68□□□□□ -2.14
CD44-233ENST00000531141 OR12D2P58182 307 aa1.68□□□□□ -2.14
CD44-233ENST00000531141 ATP6V0D1P61421 351 aa1.68□□□□□ -2.14
CD44-233ENST00000531141 YWHAEP62258 255 aaKnown RBP1.68□□□□□ -2.14
CD44-233ENST00000531141 GRB2P62993 217 aaKnown RBP1.68□□□□□ -2.14
CD44-233ENST00000531141 ATP5G2Q06055 141 aa1.68□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 65.8 ms